Jun Cai

发表

The virus integrations in gut microbes associated with dysbiosis of microbial community in tumorigenesis of colorectal carcinoma

Boyu Cui, Xiaodan Wang, Wenqiu Xu, 2019, bioRxiv.

Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data

Christopher D. Brown, K. White, S. Mi, 2011, Proceedings of the National Academy of Sciences.

Tumor diversity and evolution revealed through RADseq

R. White, C. Kaufman, C. Iacobuzio-Donahue, 2017, Oncotarget.

An interpretable deep-learning architecture of capsule networks for identifying cell-type gene expression programs from single-cell RNA-sequencing data

Zhang Zhang, Jiang Zhang, Ruyue Xin, 2020, Nature Machine Intelligence.

Histone arginine methylation by Prmt5 is required for lung branching morphogenesis through repression of BMP signaling

H. Wan, Caihong Zheng, Jun Cai, 2018, Journal of Cell Science.

Lower genomic stability of induced pluripotent stem cells reflects increased non-homologous end joining

Liu Wang, Qi Zhou, Xiao Han, 2018, Cancer communications.

inClust: a general framework for clustering that integrates data from multiple sources

Zhang Zhang, Shuo Wang, Jiang Zhang, 2022, bioRxiv.

MultiCapsNet: A General Framework for Data Integration and Interpretable Classification

Zhang Zhang, Jiang Zhang, Jun Cai, 2021, Frontiers in Genetics.

MultiCapsNet: a interpretable deep learning classifier integrate data from multiple sources

Jun Cai, Jiang Zhang, Lifei Wang, 2019, bioRxiv.

scCapsNet: a deep learning classifier with the capability of interpretable feature extraction, applicable for single cell RNA data analysis

Jun Cai, Jiang Zhang, Rui Nie, 2018, bioRxiv.

scCapsNet-mask: an updated version of scCapsNet with extended applicability in functional analysis related to scRNA-seq data

Jiang Zhang, Jun Cai, Rui Nie, 2022, BMC Bioinform..

Unique features of mutations revealed by sequentially reprogrammed induced pluripotent stem cells

Jianhui Tian, Shuai Gao, Jun Cai, 2015, Nature Communications.

Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations

Jue Ruan, Hurng‐Yi Wang, Zheng Hu, 2019, Molecular biology and evolution.

A promising iPS-based single-cell cloning strategy revealing signatures of somatic mutations in heterogeneous normal cells

S. Mi, W. Zhai, Caihong Zheng, 2020, Computational and structural biotechnology journal.

Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags

Jue Ruan, Chung-I Wu, S. Wang, 2013, BMC Genomics.

Genetic load and mutational meltdown in cancer cell populations

Jue Ruan, Chung-I Wu, Hurng‐Yi Wang, 2017, bioRxiv.

Acetoacetate Accelerates Muscle Regeneration and Ameliorates Muscular Dystrophy in Mice*

Dahai Zhu, Yong Zhang, Jun Cai, 2015, The Journal of Biological Chemistry.

Whole-Genome Sequencing Identifies Genetic Variances in Culture-Expanded Human Mesenchymal Stem Cells

Linzhao Cheng, Jun Cai, Linzhao Cheng, 2014, Stem cell reports.

Exome sequencing identifies frequent mutation of MLL2 in non–small cell lung carcinoma from Chinese patients

Jie Zhang, Laurence D. Hurst, Yuchao Zhang, 2014, Scientific Reports.

Chromatin-interacting transposon RNAs linking to the core trans-inhibition circuitry for embryonic stem cell identity

Wenqiu Xu, Caihong Zheng, Jun Cai, 2021, bioRxiv.

DSMNC: a database of somatic mutations in normal cells

Jun Cai, Xi Li, Lifei Wang, 2018, Nucleic Acids Res..

Prmt5 promotes ciliated cell specification of airway epithelial progenitors via transcriptional inhibition of Tp63

Jun Cai, Mei Mei, Qiuling Li, 2023, The Journal of biological chemistry.

A deep generative framework with embedded vector arithmetic and classifier for sample generation, label transfer, and clustering of single-cell data

Zhang Zhang, Shuo Wang, Jiang Zhang, 2023, Cell reports methods.

Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing

Li Wang, Jun Cai, Ying Huang, 2013, Bioinform..

InClust+: the deep generative framework with mask modules for multimodal data integration, imputation, and cross-modal generation

Jiang Zhang, Jun Cai, Rui Nie, 2024, BMC Bioinform..

InClust+: the multimodal version of inClust for multimodal data integration, imputation, and cross modal generation

Jiang Zhang, Jun Cai, Rui Nie, 2023, bioRxiv.