D. Lundin

发表

Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2020, Frontiers in Microbiology.

Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions

J. Gasol, D. Lundin, Elena Cerro-Gálvez, 2019, Scientific Reports.

Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

J. Lehtiö, F. Baltar, D. Lundin, 2017, Environmental microbiology.

The Origin and Evolution of Ribonucleotide Reduction

B. Sjöberg, D. Logan, D. Lundin, 2015, Life.

A Rare Combination of Ribonucleotide Reductases in the Social Amoeba Dictyostelium discoideum*

B. Sjöberg, M. Sahlin, F. Söderbom, 2013, The Journal of Biological Chemistry.

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

M. Dopson, T. Sleutels, D. Lundin, 2018, Front. Microbiol..

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes

M. Breitbart, R. Edwards, Bhakti Dwivedi, 2013, BMC Evolutionary Biology.

The evolution of early cellular systems viewed through the lens of biological interactions

A. Poole, D. Lundin, K. Rytkönen, 2015, Front. Microbiol..

Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments

A. Franzetti, D. Lundin, S. Sjöling, 2016, PeerJ.

growing and stationary phase marine bacteria

J. Lehtiö, F. Baltar, D. Lundin, 2016 .

Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers

Anders F. Andersson, M. Casini, A. Andersson, 2017, Environmental microbiology.

Characterization of a REG/PA28 Proteasome Activator Homolog in Dictyostelium discoideum Indicates that the Ubiquitin- and ATP-Independent REGγ Proteasome Is an Ancient Nuclear Protease

P. Masson, P. Young, F. Söderbom, 2009, Eukaryotic Cell.

Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter

M. Moran, D. Lundin, J. Pinhassi, 2020, bioRxiv.

Comparative Analysis of the Nodule Transcriptomes of Ceanothus thyrsiflorus (Rhamnaceae, Rosales) and Datisca glomerata (Datiscaceae, Cucurbitales)

R. van Velzen, D. Lundin, A. Berry, 2018, Front. Plant Sci..

Ribonucleotide reductases in Dictyostelium discoideum

B. Sjöberg, M. Sahlin, F. Söderbom, 2013 .

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

Anders F. Andersson, J. Venter, S. Yooseph, 2014, PloS one.

Use of Structural Phylogenetic Networks for Classification of the Ferritin-like Superfamily*

B. Sjöberg, A. Poole, M. Högbom, 2012, The Journal of Biological Chemistry.

Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent

F. Baltar, C. Legrand, Benjamin Pontiller, 2022, Frontiers in Microbiology.

A nucleotide-sensing oligomerization mechanism that controls NrdR-dependent transcription of ribonucleotide reductases

B. Sjöberg, D. Logan, D. Lundin, 2022, Nature Communications.

HUG Domain Is Responsible for Active Dimer Stabilization in an NrdJd Ribonucleotide Reductase.

M. Weiss, C. Feiler, D. Lundin, 2022, Biochemistry.

Biodegradation as an important sink of aromatic hydrocarbons in the oceans

D. Lundin, Elena Cerro-Gálvez, B. Jiménez, 2019, Nature Geoscience.

Microbial metabolic routes in metagenome assembled genomes are mirrored by the mass balance of polycyclic aromatic hydrocarbons in a high altitude lake.

E. Casamayor, D. Lundin, J. Dachs, 2022, Environmental pollution.

Seasonal and Spatial Variations in Synechococcus Abundance and Diversity Throughout the Gullmar Fjord, Swedish Skagerrak

H. Farnelid, C. Legrand, Benjamin Pontiller, 2022, Frontiers in Microbiology.

RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank

B. Sjöberg, A. Poole, E. Torrents, 2009, BMC Genomics.

Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms

Anders F. Andersson, Marie Grosjean, A. Andersson, 2022, Metabarcoding and Metagenomics.

Genomic and seasonal variations among aquatic phages infecting the Baltic Sea Gammaproteobacteria Rheinheimera sp. BAL341

K. Holmfeldt, D. Lundin, J. Pinhassi, 2019 .

Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2022, The ISME Journal.

The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site

B. Sjöberg, M. Sahlin, D. Logan, 2015, PloS one.

Cobalamin and microbial plankton dynamics along a coastal to offshore transect in the Eastern North Atlantic Ocean.

X. Álvarez‐Salgado, Benjamin Pontiller, D. Lundin, 2020, Environmental microbiology.

Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils

M. Dopson, D. Lundin, M. Lopez-Fernandez, 2022, Communications Earth & Environment.

Functional responses of key marine bacteria to environmental change – toward genetic counselling for coastal waters

Anders F. Andersson, C. Quince, L. Riemann, 2022, Frontiers in Microbiology.

A glutaredoxin domain fused to the radical-generating subunit of ribonucleotide reductase (RNR) functions as an efficient RNR reductant

B. Sjöberg, M. Sahlin, D. Lundin, 2018, The Journal of Biological Chemistry.

Fusion of a functional glutaredoxin to the radical-generating subunit of ribonucleotide reductase

B. Sjöberg, M. Sahlin, D. Lundin, 2018, bioRxiv.

ASV portal: an interface to DNA-based biodiversity data in the Living Atlas

F. Ronquist, A. Andersson, D. Lundin, 2023, BMC Bioinformatics.

Deregulation of the A-to-I RNA editing mechanism in psychiatric disorders.

Gilad Silberberg, Marie Öhman, Ruth Navon, 2012, Human molecular genetics.

Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments

S. Bertilsson, P. Hall, D. Lundin, 2021, Limnology and Oceanography.

Metal-independent ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

B. Sjöberg, M. Sahlin, R. Branca, 2018, bioRxiv.

High‐resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states – an unusual flavodoxin

B. Sjöberg, M. Sahlin, D. Logan, 2010, The FEBS journal.

Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations

K. Holmfeldt, S. Bertilsson, M. Dopson, 2015, The ISME Journal.

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea

Anders F. Andersson, A. Andersson, D. Lundin, 2016, Front. Microbiol..

Identiﬁcation and characterization of a novel botulinum neurotoxin

Jie Zhang, Min Dong, D. Lundin, 2022 .

Diversity in Overall Activity Regulation of Ribonucleotide Reductase*

B. Sjöberg, D. Lundin, Mikael Crona, 2015, The Journal of Biological Chemistry.

Structural determinants and distribution of phosphate specificity in ribonucleotide reductases

D. Lundin, C. Loderer, E. Steiner, 2021, The Journal of biological chemistry.

Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

Rui M. M. Branca, B. Sjöberg, M. Sahlin, 2018, Nature.

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains

B. Sjöberg, S. Gribaldo, A. Poole, 2010, BMC Evolutionary Biology.

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

Terrence S. Furey, Bei Wang, Jens Lagergren, 2010, BMC Bioinformatics.

The POU/Oct Transcription Factor Pdm1/nub Is Necessary for a Beneficial Gut Microbiota and Normal Lifespan of Drosophila

Shiva Seyedoleslami Esfahani, Y. Engström, D. Lundin, 2016, Journal of Innate Immunity.

Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic

T. Reinthaler, F. Baltar, D. Lundin, 2016, Front. Microbiol..

Bacteroidetes to Firmicutes: captivity changes the gut microbiota composition and diversity in a social subterranean rodent

D. Lundin, Hanna M. Bensch, J. Waldenström, 2023, Animal Microbiome.

Class Id ribonucleotide reductase utilizes a Mn2(IV,III) cofactor and undergoes large conformational changes on metal loading

Felix M. Ho, B. Sjöberg, D. Logan, 2019, JBIC Journal of Biological Inorganic Chemistry.

Diversity and Host Interactions among Virulent and Temperate Baltic Sea Flavobacterium Phages

K. Holmfeldt, A. Antson, D. Lundin, 2020, Viruses.

A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities

B. Sjöberg, A. Poole, D. Lundin, 2013, PloS one.

Comparative Genomic Evidence for a Complete Nuclear Pore Complex in the Last Eukaryotic Common Ancestor

A. Poole, D. Lundin, Nadja Neumann, 2010, PloS one.

Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord

Benjamin Pontiller, D. Lundin, J. Pinhassi, 2021, bioRxiv.

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles

Anders F. Andersson, K. Holmfeldt, S. Bertilsson, 2021, Communications biology.

Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341

K. Holmfeldt, D. Lundin, J. Pinhassi, 2019, Applied and Environmental Microbiology.

Dynamics of Baltic Sea phages driven by environmental changes.

K. Holmfeldt, M. Middelboe, Benjamin Pontiller, 2021, Environmental microbiology.

Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

Anders F. Andersson, L. Lebrun, P. Wilmes, 2014, PloS one.

Fish Skin Microbiomes Are Highly Variable Among Individuals and Populations but Not Within Individuals

D. Lundin, Elias Broman, P. Larsson, 2022, Frontiers in Microbiology.

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea

Anders F. Andersson, L. Riemann, A. Andersson, 2018, Scientific Data.

Microbial Plankton Community Structure and Function Responses to Vitamin B12 and B1 Amendments in an Upwelling System

Benjamin Pontiller, Sandra Martínez-García, D. Lundin, 2021, Applied and environmental microbiology.

Metagenomic De Novo Assembly of an Aquatic Representative of the Verrucomicrobial Class Spartobacteria

Anders F. Andersson, Zongli Zheng, A. Andersson, 2013, mBio.

Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities

F. Baltar, C. Legrand, D. Lundin, 2015, Front. Microbiol..

Responses of Coastal Marine Microbiomes Exposed to Anthropogenic Dissolved Organic Carbon

D. Lundin, Elena Cerro-Gálvez, J. Dachs, 2021, Environmental science & technology.

Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters

D. Lundin, J. Pinhassi, Elena Cerro-Gálvez, 2019, Environmental microbiology.

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts

Ivica Tamas, Björn Nystedt, S. Andersson, 2008, Proceedings of the National Academy of Sciences.

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341

D. Lundin, J. Pinhassi, Elena Cerro-Gálvez, 2019, Microbial biotechnology.

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

Anders F. Andersson, A. Andersson, D. Lundin, 2012, Environmental microbiology reports.

Publishing DNA-derived data through biodiversity data platforms. version 1.0.

A. Andersson, A. Finstad, T. Jeppesen, 2020 .

A ribonucleotide reductase from Clostridium botulinum reveals distinct evolutionary pathways to regulation via the overall activity site

B. Sjöberg, M. Sahlin, M. Högbom, 2020, The Journal of Biological Chemistry.

Non-host class II ribonucleotide reductase in Thermus viruses: sequence adaptation and host interaction

K. Holmfeldt, D. Lundin, C. Loderer, 2019, PeerJ.

Basic Leucine Zipper Protein Cnc-C Is a Substrate and Transcriptional Regulator of the Drosophila 26S Proteasome

P. Young, A. Beskow, D. Lundin, 2010, Molecular and Cellular Biology.

Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions

J. Gasol, D. Lundin, Elena Cerro-Gálvez, 2019, Scientific Reports.

Structural and Biochemical Investigation of Class I Ribonucleotide Reductase from the Hyperthermophile Aquifex aeolicus

M. Sahlin, D. Lundin, P. Stenmark, 2022 .

Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins

R. Branca, N. Cox, M. Haumann, 2019, The Journal of Biological Chemistry.

Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2018, eLife.

Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit

B. Sjöberg, M. Sahlin, D. Logan, 2017, bioRxiv.

Assembly of Dimanganese and Heterometallic Manganese Proteins

B. Sjöberg, D. Lundin, G. Berggren, 2017 .

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones.

B. Sjöberg, D. Logan, D. Lundin, 2016, Structure.

A unique cysteine-rich zinc finger domain present in a majority of class II ribonucleotide reductases mediates catalytic turnover

B. Sjöberg, M. Sahlin, D. Lundin, 2017, The Journal of Biological Chemistry.

Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones.

B. Sjöberg, D. Logan, D. Lundin, 2016, Structure.

Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens

Rui M. M. Branca, B. Sjöberg, M. Sahlin, 2018, Nature.

Accumulation of DNA in an anoxic sediment – rDNA and rRNA presence of members of the microbial community from Landsort Deep, the Baltic Sea

A. Franzetti, D. Lundin, Petter Thureborn, 2017 .

Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment

D. Lundin, J. Pinhassi, A. Andersson, 2015, AMBIO.

Responses to organic pollutants in the tropical Pacific and subtropical Atlantic Oceans by pelagic marine bacteria

D. Lundin, J. Dachs, M. Vila-Costa, 2023, Frontiers in Environmental Science.

Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

E. Calvo, C. Pelejero, K. Holmfeldt, 2016 .

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

Anders F. Andersson, A. Andersson, F. Baltar, 2015, Environmental microbiology.

Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria.

H. Farnelid, C. Legrand, D. Lundin, 2023, Environmental microbiology.

Biogenic silica accumulation in picoeukaryotes: Novel players in the marine silica cycle

D. Conley, H. Farnelid, D. Lundin, 2023, Environmental microbiology reports.

Environmental effects rather than relatedness determine gut microbiome similarity in a social mammal

D. Lundin, Hanna M. Bensch, J. Waldenström, 2023, Journal of evolutionary biology.

Publishing DNA-derived data through biodiversity data platforms

Anders F. Andersson, C. Mungall, P. Buttigieg, 2021 .

Freeze-drying can replace cold-chains for transport and storage of fecal microbiome samples

D. Lundin, Hanna M. Bensch, J. Waldenström, 2022, PeerJ.

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa

C. Ouzounis, N. Mulder, S. Baichoo, 2015, Standards in Genomic Sciences.

Bimodal occupancy-frequency distributions uncover the importance of regional dynamics in shaping marine microbial biogeography

Anders F. Andersson, M. Casini, C. Legrand, 2016, bioRxiv.

BalticMicrobeDB , a reference metagenome and interface to meta-omic data for the Baltic

Anders F. Andersson, L. Riemann, J. Alneberg, 2018 .

Activity modulation in anaerobic ribonucleotide reductases: nucleotide binding to the ATP-cone mediates long-range order-disorder transitions in the active site

B. Sjöberg, D. Logan, D. Lundin, 2023, bioRxiv.

Basic Leucine Zipper Protein Cnc-C Is a Substrate and Transcriptional Regulator of the Drosophila 26S Proteasome

P. Young, A. Beskow, D. Lundin, 2010, Molecular and Cellular Biology.

Characterization of a REG/PA28 Proteasome Activator Homolog in Dictyostelium discoideum Indicates that the Ubiquitin- and ATP-Independent REGγ Proteasome Is an Ancient Nuclear Protease

P. Masson, P. Young, D. Lundin, 2009, Eukaryotic Cell.

Bacteroidetes to Firmicutes: captivity changes the gut microbiota composition and diversity in a social subterranean rodent

D. Lundin, J. Waldenström, C. Tolf, 2023, Animal Microbiome.