N. Roosens

发表

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing.

D. Deforce, S. D. De Keersmaecker, T. Ruttink, 2016, Food chemistry.

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2019, Applied Microbiology and Biotechnology.

Urinary CC16, a potential indicator of lung integrity and inflammation, increases in children after short-term exposure to PM2.5/PM10 and is driven by the CC16 38 GG genotype.

N. Saenen, T. Nawrot, S. D. De Keersmaecker, 2022, Environmental research.

A new multiplex RT-qPCR method for the simultaneous detection and discrimination of Zika and chikungunya viruses

Marie-Alice Fraiture, N. Roosens, D. Rousset, 2019, International Journal of Infectious Diseases.

An innovative and integrated approach based on DNA walking to identify unauthorised GMOs.

D. Deforce, Marie-Alice Fraiture, M. De Loose, 2014, Food chemistry.

Development and validation of qualitative SYBR®Green Real-Time PCR for detection and discrimination of Listeria spp. and Listeria monocytogenes

N. Roosens, J. Mahillon, N. Botteldoorn, 2012, Applied Microbiology and Biotechnology.

How to Deal with the Upcoming Challenges in GMO Detection in Food and Feed

S. D. De Keersmaecker, N. Roosens, S. Broeders, 2012, Journal of biomedicine & biotechnology.

New qualitative trait-specific SYBR®Green qPCR methods to expand the panel of GMO screening methods used in the CoSYPS

Marie-Alice Fraiture, N. Roosens, S. Broeders, 2015, European Food Research and Technology.

Guidelines for validation of qualitative real-time PCR methods

G. Berben, N. Roosens, I. Taverniers, 2014 .

Development and performance assessment of a qualitative SYBR® green real-time PCR assay for the detection of Aspergillus versicolor in indoor air

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2015, Applied Microbiology and Biotechnology.

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Microorganisms.

Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system

S. D. De Keersmaecker, N. Roosens, K. Dierick, 2018, Applied Microbiology and Biotechnology.

Development of a Luminex-based molecular alternative for classical microbiological subtyping techniques, Salmonella phage typing as a case study

K. Marchal, N. Roosens, S. Bertrand, 2014 .

Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2017, BMC Microbiology.

ddPCR strategy to detect a gene-edited plant carrying a single variation point: Technical feasibility and interpretation issues

Anne-Cécile Meunier, Marie-Alice Fraiture, N. Roosens, 2022, Food Control.

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Scientific Reports.

Isolation of the ornithine-delta-aminotransferase cDNA and effect of salt stress on its expression in Arabidopsis thaliana.

N. Roosens, M. Jacobs, T. T. Thu, 1998, Plant physiology.

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program

K. Vanneste, S. D. De Keersmaecker, A. Antoniou, 2020, Cancers.

The use of comparative genome analysis and syntenic relationships allows extrapolating the position of Zn tolerance QTL regions from Arabidopsis halleri into Arabidopsis thaliana

N. Roosens, Glenda Willems, P. Saumitou-Laprade, 2008, Plant and Soil.

First monitoring for unauthorized genetically modified bacteria in food enzymes from the food market

Marie-Alice Fraiture, N. Roosens, M. Loose, 2021, Food Control.

Genetically Modified Micro-Organisms for Industrial Food Enzyme Production: An Overview

D. Deforce, Marie-Alice Fraiture, N. Roosens, 2020, Foods.

Development and Evaluation of a Multiplex SARS-CoV-2 RT-ddPCR, Applicable to Respiratory and Wastewater Samples

A. Cay, Marie-Alice Fraiture, P. Herman, 2021 .

Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin

S. D. De Keersmaecker, N. Roosens, E. Barbau-Piednoir, 2015, BMC Biotechnology.

SYBR®Green qPCR Salmonella detection system allowing discrimination at the genus, species and subspecies levels

N. Roosens, J. Mahillon, S. Bertrand, 2013, Applied Microbiology and Biotechnology.

Development of a Molecular Platform for GMO Detection in Food and Feed on the Basis of “Combinatory qPCR” Technology

N. Roosens, S. Broeders, N. Papazova, 2012 .

Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2020, Journal of biomolecular techniques : JBT.

Next-Generation Sequencing: An Eye-Opener for the Surveillance of Antiviral Resistance in Influenza.

X. Saelens, N. Roosens, I. Thomas, 2019, Trends in biotechnology.

Fast and discriminative CoSYPS detection system of viable Salmonella spp. and Listeria spp. in carcass swab samples.

N. Roosens, K. Dierick, J. Mahillon, 2015, International journal of food microbiology.

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies.

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2014, Journal of Biomolecular Techniques.

Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children

N. Saenen, T. Nawrot, S. D. De Keersmaecker, 2022, International journal of environmental research and public health.

When population genetics serves genomics: putting adaptation back in a spatial and historical context.

N. Roosens, P. Saumitou-Laprade, M. Pauwels, 2008, Current opinion in plant biology.

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, International journal of molecular sciences.

Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2022, Frontiers in Microbiology.

Proline accumulation and Δ1-pyrroline-5-carboxylate synthetase gene properties in three rice cultivars differing in salinity and drought tolerance

C. Hermans, N. Roosens, M. Jacobs, 2003 .

Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium

K. Vanneste, S. D. De Keersmaecker, F. Boyen, 2020, Emerging infectious diseases.

Four new SYBR®Green qPCR screening methods for the detection of Roundup Ready®, LibertyLink®, and CryIAb traits in genetically modified products

N. Roosens, M. Sneyers, A. Lievens, 2011, European Food Research and Technology.

SYBR®Green qPCR screening methods for the presence of “35S promoter” and “NOS terminator” elements in food and feed products

N. Roosens, M. Sneyers, A. Lievens, 2009 .

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015.

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, International journal of food microbiology.

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Annals of clinical microbiology and antimicrobials.

Merging methods in molecular and ecological genetics to study the adaptation of plants to anthropogenic metal‐polluted sites: implications for phytoremediation

N. Roosens, Glenda Willems, P. Saumitou-Laprade, 2008, Molecular ecology.

Validation of a sensitive DNA walking strategy to characterise unauthorised GMOs using model food matrices mimicking common rice products.

D. Deforce, F. van Nieuwerburgh, Marie-Alice Fraiture, 2015, Food chemistry.

SYBR®Green qPCR methods for detection of endogenous reference genes in commodity crops: a step ahead in combinatory screening of genetically modified crops in food and feed products

N. Roosens, M. Sneyers, A. Lievens, 2011 .

Genome Sequence of the Salmonella enterica subsp. enterica Serovar Namur Strain 05-2929, Lacking the Salmonella Atypical Fimbrial Operon

S. D. De Keersmaecker, N. Roosens, S. Bertrand, 2014, Genome Announcements.

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019

K. Vanneste, S. D. De Keersmaecker, P. Wattiau, 2021, The Journal of antimicrobial chemotherapy.

A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2022, Microbial genomics.

Inter-laboratory Testing of GMO Detection by Combinatory SYBR®Green PCR Screening (CoSYPS)

N. Roosens, M. Mazzara, G. Eede, 2014, Food Analytical Methods.

Isolation of Burkholderia pseudomallei from a Pet Green Iguana, Belgium

K. Vanneste, F. Boyen, F. Haesebrouck, 2018, Emerging infectious diseases.

SYBR®Green qPCR Salmonella detection system allowing discrimination at the genus, species and subspecies levels

N. Roosens, J. Mahillon, S. Bertrand, 2013, Applied Microbiology and Biotechnology.

Development and validation of qualitative SYBR®Green Real-Time PCR for detection and discrimination of Listeria spp. and Listeria monocytogenes

N. Roosens, J. Mahillon, N. Botteldoorn, 2012, Applied Microbiology and Biotechnology.

Shifting national surveillance of Shigella infections toward geno‐serotyping by the development of a tailored Luminex assay and NGS workflow

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2019, MicrobiologyOpen.

Growth and mineral element composition in two ecotypes of Thlaspi caerulescens on Cd contaminated soil

N. Roosens, P. Meerts, C. Dechamps, 2005, Plant and Soil.

How Can We Better Detect Unauthorized GMOs in Food and Feed Chains?

Marie-Alice Fraiture, M. De Loose, P. Herman, 2017, Trends in biotechnology.

Natural variation in cadmium tolerance and its relationship to metal hyperaccumulation for seven populations of Thlaspi caerulescens from western Europe

J. A. Smith, P. Ximénez-Embún, N. Roosens, 2003 .

Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation Sequencing Technologies

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2019, International journal of molecular sciences.

Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations

D. Deforce, K. Vanneste, S. D. De Keersmaecker, 2020 .

Next-generation sequencing as a tool for the molecular characterisation and risk assessment of genetically modified plants: Added value or not ?

Patrick du Jardin, Sigrid De Keersmaecker, Adinda De Schrijver, 2015 .

A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2015, Applied Microbiology and Biotechnology.

MLVA as a Tool for Public Health Surveillance of Human Salmonella Typhimurium: Prospective Study in Belgium and Evaluation of MLVA Loci Stability

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2013, PloS one.

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Scientific Reports.

Detection strategy targeting a chloramphenicol resistance gene from genetically modified bacteria in food and feed products

Marie-Alice Fraiture, N. Roosens, N. Papazova, 2020 .

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market

S. D. De Keersmaecker, J. Ovesná, Marie-Alice Fraiture, 2019, Scientific Reports.

Isolation of the Ornithine- d -Aminotransferase cDNA and Effect of Salt Stress on Its Expression in Arabidopsis thaliana 1

N. Roosens, M. Jacobs, T. T. Thu, 1998 .

Overexpression of ornithine-δ-aminotransferase increases proline biosynthesis and confers osmotolerance in transgenic plants

N. Roosens, M. Jacobs, G. Angenon, 2002, Molecular Breeding.

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept

Kathleen Marchal, Assia Saltykova, Wesley Mattheus, 2019, Front. Microbiol..

Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants

K. Vanneste, S. D. De Keersmaecker, P. Herman, 2021, Genes.

A theoretical introduction to “Combinatory SYBR®Green qPCR Screening”, a matrix-based approach for the detection of materials derived from genetically modified plants

N. Roosens, M. Sneyers, A. Lievens, 2009, Analytical and bioanalytical chemistry.

The genetic structure of the Belgian population

E. Goetghebeur, J. Vermeesch, S. Demarest, 2018, Human Genomics.

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial genomics.

Evaluation of the added value of viral genomic information for predicting severity of influenza infection

K. Vanneste, S. D. De Keersmaecker, H. Van Oyen, 2021, BMC Infectious Diseases.

Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation.

R. De Groodt, P. Hilson, N. Roosens, 2012, Journal of experimental botany.

Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

Overexpression of a novel feedback-desensitized Δ1-pyrroline-5-carboxylate synthetase increases proline accumulation and confers salt tolerance in transgenic Nicotiana plumbaginifolia

N. Roosens, M. Jacobs, G. Angenon, 2015, Plant Cell, Tissue and Organ Culture (PCTOC).

Proline biosynthesis related to salt stress in higher plants

N. Roosens, M. Jacobs, 1999 .

A Major Quantitative Trait Locus for Cadmium Tolerance in Arabidopsis halleri Colocalizes with HMA4, a Gene Encoding a Heavy Metal ATPase1[OA]

Samuel Arvidsson, N. Roosens, Glenda Willems, 2007, Plant Physiology.

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2023, Microbial genomics.

Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.

S. D. De Keersmaecker, A. Malousi, N. Roosens, 2022, Fish & shellfish immunology.

Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2022, Life.

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Journal of Clinical Microbiology.

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial Genomics.

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept

Kevin Vanneste, Sophie Bertrand, Pieter-Jan Ceyssens, 2019, Front. Microbiol..

Status and potential of bacterial genomics for public health practice: a scoping review

H. Van Oyen, N. Roosens, B. Devleesschauwer, 2019, Implementation Science.

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microorganisms.

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Antibiotics.

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2021, Acta clinica Belgica.

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, Microbial genomics.

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

New SYBR®Green methods targeting promoter sequences used for screening of several GM events pending for authorisation in Europe

N. Roosens, S. Broeders, F. Debode, 2013, European Food Research and Technology.

Current and New Approaches in GMO Detection: Challenges and Solutions

D. Deforce, Marie-Alice Fraiture, M. De Loose, 2015, BioMed research international.

Sequence analysis, transcriptional and posttranscriptional regulation of the rice vdac family.

N. Roosens, M. Vauterin, M. Jacobs, 2003, Biochimica et biophysica acta.

Advances in the Identification of Genetically Modified Foods

D. Deforce, Marie-Alice Fraiture, P. Herman, 2016 .

Using Arabidopsis to explore zinc tolerance and hyperaccumulation.

N. Roosens, Glenda Willems, P. Saumitou-Laprade, 2008, Trends in plant science.

Metal binding properties and structure of a type III metallothionein from the metal hyperaccumulator plant Noccaea caerulescens.

E. Goormaghtigh, G. Vandenbussche, C. Govaerts, 2012, Biochimica et biophysica acta.

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial genomics.

Retrospective survey of unauthorized genetically modified bacteria harbouring antimicrobial resistance genes in feed additive vitamin B2 commercialized in Belgium: Challenges and solutions

Marie-Alice Fraiture, N. Roosens, J. Michelet, 2021 .

Population Analysis of O26 Shiga Toxin-Producing Escherichia coli Causing Hemolytic Uremic Syndrome in Italy, 1989–2020, Through Whole Genome Sequencing

K. Vanneste, S. D. De Keersmaecker, F. Gigliucci, 2022, Frontiers in Cellular and Infection Microbiology.

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory’s Viewpoint

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2015, PLoS currents.

A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG™ cell line as a rapid and reliable tool for improved in vitro hazard assessment

Dimiter Milushev, Vera Rogiers, Luc Verschaeve, 2018, Archives of Toxicology.

Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf

K. Vanneste, S. D. De Keersmaecker, F. Boyen, 2021, Frontiers in Veterinary Science.

Development of a multiplex mass spectrometry method for simultaneous quantification of urinary proteins related to respiratory health

S. D. De Keersmaecker, A. Bernard, N. Roosens, 2021, Scientific Reports.

Gender‐dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2020, Immunity, inflammation and disease.

Noninvasive integrative approach applied to children in the context of recent air pollution exposure demonstrates association between fractional exhaled nitric oxide (FeNO) and urinary CC16.

T. Nawrot, S. D. De Keersmaecker, J. Vercauteren, 2022, Environmental research.

Evaluation of viability-qPCR detection system on viable and dead Salmonella serovar Enteritidis.

Jacques Mahillon, Elodie Barbau-Piednoir, Wim Coucke, 2014, Journal of microbiological methods.

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, Food microbiology.

Biotech rice: Current developments and future detection challenges in food and feed chain

Dieter Deforce, Marie-Alice Fraiture, Philippe Herman, 2016 .

The GMOseek matrix: a decision support tool for optimizing the detection of genetically modified plants

Kristina Gruden, Dany Morisset, Sylvia Broeders, 2013, BMC Bioinformatics.

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2022, Foods.

A systematic review and meta-analysis of host genetic factors associated with influenza severity

H. Van Oyen, N. Roosens, N. Bossuyt, 2021, BMC Genomics.

The Five AhMTP1 Zinc Transporters Undergo Different Evolutionary Fates towards Adaptive Evolution to Zinc Tolerance in Arabidopsis halleri

P. Berthomieu, F. Gosti, N. Roosens, 2010, PLoS genetics.

Characterization of a cDNA encoding a rice mitochondrial voltage-dependent anion channel and its gene expression studied upon plant development and osmotic stress.

N. Roosens, M. Jacobs, F. Homblé, 2000, Biochimica et biophysica acta.

Evidence for copper homeostasis function of metallothionein (MT3) in the hyperaccumulator Thlaspi caerulescens

R. Leplae, N. Roosens, N. Verbruggen, 2004, FEBS letters.

Molecular Subtyping of Salmonella Typhimurium with Multiplex Oligonucleotide Ligation-PCR (MOL-PCR).

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2017, Methods in molecular biology.

Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms

K. Vanneste, S. D. De Keersmaecker, Anne-Cécile Meunier, 2023, Foods.

Julien Van Braekel, K. Marchal, N. Roosens, 2021 .

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Annals of Clinical Microbiology and Antimicrobials.

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-

Kathleen Marchal, Sophie Bertrand, Assia Saltykova, 2018, PLoS ONE.

Non-Invasive versus Invasive Samples for Zika Virus Surveillance: A Comparative Study in New Caledonia and French Guiana in 2015–2016

Marie-Alice Fraiture, N. Roosens, D. Rousset, 2021, Microorganisms.

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO

D. Deforce, K. Vanneste, S. D. De Keersmaecker, 2018, Scientific Reports.

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2022, Food chemistry. Molecular sciences.

DNA walking strategy to identify unauthorized genetically modified bacteria in microbial fermentation products.

Marie-Alice Fraiture, N. Roosens, N. Papazova, 2020, International journal of food microbiology.

Strategy to Detect Genetically Modified Bacteria Carrying Tetracycline Resistance Gene in Fermentation Products

Marie-Alice Fraiture, N. Roosens, N. Papazova, 2020, Food Analytical Methods.

Are antimicrobial resistance genes key targets to detect genetically modified microorganisms in fermentation products?

Marie-Alice Fraiture, N. Roosens, N. Papazova, 2020, International journal of food microbiology.

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2020, Scientific Reports.

An integrated strategy combining DNA walking and NGS to detect GMOs.

D. Deforce, T. Ruttink, Marie-Alice Fraiture, 2017, Food chemistry.

Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices

D. Deforce, Marie-Alice Fraiture, M. De Loose, 2015, BMC Biotechnology.

Optimization and Application of a Multiplex Digital PCR Assay for the Detection of SARS-CoV-2 Variants of Concern in Belgian Influent Wastewater

L. Lahousse, Tim Boogaerts, A. V. van Nuijs, 2022, Viruses.

Development of a Taxon-Specific Real-Time PCR Method Targeting the Bacillus subtilis Group to Strengthen the Control of Genetically Modified Bacteria in Fermentation Products

Marie-Alice Fraiture, N. Roosens, N. Papazova, 2022, Fermentation.

Development of a Real-time PCR Method Targeting an Unauthorized Genetically Modified Microorganism Producing Alpha-Amylase

Marie-Alice Fraiture, N. Roosens, U. Marchesi, 2021, Food Analytical Methods.

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution

A. Cay, S. D. De Keersmaecker, Marie-Alice Fraiture, 2021, Current issues in molecular biology.

Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, Frontiers in Microbiology.

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 in wastewater using targeted deep Illumina sequencing

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, medRxiv.

Variations in plant metallothioneins: the heavy metal hyperaccumulator Thlaspi caerulescens as a study case

R. Leplae, N. Roosens, N. Verbruggen, 2005, Planta.

Development of Digital Droplet PCR Targeting the Influenza H3N2 Oseltamivir-Resistant E119V Mutation and Its Performance through the Use of Reverse Genetics Mutants

X. Saelens, N. Roosens, S. Van Gucht, 2023, Current issues in molecular biology.

Optimized MOL‐PCR for Characterization of Microbial Pathogens

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2016, Current protocols in cytometry.

Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array

Kathleen Marchal, Sophie Bertrand, Sigrid C J De Keersmaecker, 2015, BioMed research international.

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019

H. Oyen, S. D. De Keersmaecker, M. Struelens, 2020, BMC Public Health.

Model-Based Classification for Digital PCR: Your Umbrella for Rain.

Els Goetghebeur, Lieven Clement, Nina Papazova, 2017, Analytical chemistry.

Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

Corrigendum to “Expression of the rice vdac isoform2: histochemical localization and expression level” [Biochim. Biophys. Acta 1579 (2002) 133–141]

N. Roosens, M. Jacobs, F. Homblé, 2003 .

Expression of the rice vdac isoform2: histochemical localization and expression level.

N. Roosens, M. Jacobs, F. Homblé, 2002, Biochimica et biophysica acta.

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Foods.

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay.

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, Food microbiology.

Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection

K. Vanneste, S. D. De Keersmaecker, P. Herman, 2020, International journal of molecular sciences.

A novel CPx‐ATPase from the cadmium hyperaccumulator Thlaspi caerulescens

N. Roosens, M. Lebrun, N. Verbruggen, 2004, FEBS letters.

Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study

K. Vanneste, N. Roosens, S. Broeders, 2018, BMC Bioinformatics.

Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2023, Microorganisms.

Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015.

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2017, Foodborne pathogens and disease.

Development of a Droplet Digital PCR to Monitor SARS-CoV-2 Omicron Variant BA.2 in Wastewater Samples

P. Herman, N. Roosens, B. Verhaegen, 2023, Microorganisms.

Application of whole genome data for in silico evaluation of primers and probes routinely employed for the detection of viral species by RT-qPCR using dengue virus as a case study

Kevin Vanneste, Linda Garlant, Sylvia Broeders, 2018, BMC Bioinformatics.

Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of Exophiala jeanselmei in Indoor Air of Air-Conditioned Offices

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2019, Microorganisms.

Inter-laboratory studies for the validation of two singleplex (tE9 and pea lectin) and one duplex (pat/bar) real-time PCR methods for GMO detection

Dany Morisset, Sylvia Broeders, Nancy H. C. Roosens, 2017 .

Belgian NRL-GMO inter-laboratory testing of combinatory sybr®green pcr screening (CoSYPS)

N. Roosens, S. Broeders, N. Papazova, 2014 .

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2023, BMC Genomics.

Characterization of Genetically Modified Microorganisms Using Short- and Long-Read Whole-Genome Sequencing Reveals Contaminations of Related Origin in Multiple Commercial Food Enzyme Products

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2021, Foods.

Genome Sequence of EU-Unauthorized Genetically Modified Bacillus subtilis Strain 2014-3557 Overproducing Riboflavin, Isolated from a Vitamin B2 80% Feed Additive

W. Pirovano, S. D. De Keersmaecker, N. Roosens, 2015, Genome Announcements.

Inter-laboratory analysis of selected genetically modified plant reference materials with digital PCR

G. Berben, N. Roosens, David Dobnik, 2017, Analytical and Bioanalytical Chemistry.

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies.

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2014, Journal of biomolecular techniques : JBT.

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Food chemistry. Molecular sciences.

Model-Based Classification for Digital PCR: Your Umbrella for Rain.

E. Goetghebeur, J. Vandesompele, L. Clement, 2017, Analytical chemistry.

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

K. Vanneste, S. D. De Keersmaecker, B. Jacobs, 2023, Frontiers in Microbiology.

Using Arabidopsis to explore zinc tolerance and hyperaccumulation.

N. Roosens, Glenda Willems, P. Saumitou-Laprade, 2008, Trends in plant science.

A Major Quantitative Trait Locus for Cadmium Tolerance in Arabidopsis halleri Colocalizes with HMA4 ,aG ene

Samuel Arvidsson, N. Roosens, Glenda Willems, 2007 .

Next-generation sequencing as a tool for the molecular characterisation and risk assessment of genetically modified plants: Added value or not ?

P. Herman, N. Roosens, P. Jardin, 2015 .

High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei.

R. Grunow, S. D. De Keersmaecker, P. Wattiau, 2018, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes

K. Vanneste, S. D. De Keersmaecker, M. AbuOun, 2024, Frontiers in microbiology.

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2023, Frontiers in microbiology.

Development of a reverse transcriptase digital droplet polymerase chain reaction‐based approach for SARS‐CoV‐2 variant surveillance in wastewater

S. D. De Keersmaecker, Marie-Alice Fraiture, N. Roosens, 2024, Water environment research : a research publication of the Water Environment Federation.

The potential of including the microbiome as biomarker in population-based health studies: methods and benefits

S. D. De Keersmaecker, N. Roosens, F. Buytaers, 2024, Frontiers in public health.