D. Emerson

发表

Mud, Microbes, and Macrofauna: Seasonal Dynamics of the Iron Biogeochemical Cycle in an Intertidal Mudflat

P. Girguis, P. Countway, J. P. Beam, 2020, Frontiers in Marine Science.

Mud, microbes, and macrofauna: seasonal dynamics of the iron biogeochemical cycle in an intertidal mudflat

P. Girguis, P. Countway, J. P. Beam, 2020, bioRxiv.

Termites. Ph Gradients in Guts of Lower and Higher Microelectrode Determination of Oxygen And

A. Brune, D. Emerson, J. Breznak, 1995 .

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

K. Nealson, G. Garrity, J. Amend, 2020, mBio.

Glycine betaine as a cryoprotectant for prokaryotes.

P. Krader, Jane S Tang, D. Emerson, 2004, Journal of microbiological methods.

Biogenic Iron Dust: A Novel Approach to Ocean Iron Fertilization as a Means of Large Scale Removal of Carbon Dioxide From the Atmosphere

D. Emerson, 2019, Front. Mar. Sci..

An examination of the carbon isotope effects associated with amino acid biosynthesis.

Henry J Sun, Henry J. Sun, G. Mcdonald, 2006, Astrobiology.

Identifying and Characterizing Bacteria in an Era of Genomics and Proteomics

D. Emerson, Liping Liu, L. Agulto, 2008 .

Microbial Metal Cycling in Aquatic Environments

E. Roden, D. Emerson, 2007 .

Microbial Iron Oxidation in the Arctic Tundra and Its Implications for Biogeochemical Cycling

W. Bowden, D. Emerson, J. Scott, 2015, Applied and Environmental Microbiology.

The Fe(II)-oxidizing Zetaproteobacteria: historical, ecological and genomic perspectives

Ryan M. Moore, G. Luther, C. Chan, 2019, FEMS microbiology ecology.

Rhizosphere iron (III) deposition and reduction in a Juncus effusus L.-dominated wetland

J. Megonigal, D. Emerson, J. Weiss, 2005 .

Returning to Their Roots: Iron-Oxidizing Bacteria Enhance Short-Term Plaque Formation in the Wetland-Plant Rhizosphere

J. Megonigal, D. Emerson, S. Neubauer, 2007 .

Haloferax sp. D1227, a halophilic Archaeon capable of growth on aromatic compounds

D. Emerson, J. Breznak, Sadhana Chauhan, 1994, Archives of Microbiology.

Structural Iron (II) of Basaltic Glass as an Energy Source for Zetaproteobacteria in an Abyssal Plain Environment, Off the Mid Atlantic Ridge

A. Mumford, B. Ménez, D. Emerson, 2016, Front. Microbiol..

Low-oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron(II) oxidizing microorganisms

G. Luther, D. Emerson, R. Sutka, 2008 .

Iron-oxidizing bacteria: an environmental and genomic perspective.

David Emerson, D. Emerson, Emily J Fleming, 2010, Annual review of microbiology.

Metabolic Processes Preserved as Biosignatures in Iron-Oxidizing Microorganisms: Implications for Biosignature Detection on Mars

D. Emerson, A. Williams, A. Grubisic, 2018, Astrobiology.

A model for sheath formation coupled to motility in Leptothrix ochracea

J. Vesenka, D. Emerson, K. Hruby, 2017, bioRxiv.

Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer

K. Nealson, J. Amend, B. Tully, 2018, Genome Announcements.

A model for sheath formation coupled to motility in Leptothrix ochracea

J. Vesenka, D. Emerson, James Havu, 2017, bioRxiv.

Comparative Genomic Analysis of Neutrophilic Iron(II) Oxidizer Genomes for Candidate Genes in Extracellular Electron Transfer

E. Roden, Shaomei He, D. Emerson, 2017, Front. Microbiol..

The Architecture of Iron Microbial Mats Reflects the Adaptation of Chemolithotrophic Iron Oxidation in Freshwater and Marine Environments

B. Glazer, C. Chan, D. Emerson, 2016, Front. Microbiol..

Peeking under the Iron Curtain: Development of a Microcosm for Imaging the Colonization of Steel Surfaces by Mariprofundus sp. Strain DIS-1, an Oxygen-Tolerant Fe-Oxidizing Bacterium

A. Mumford, D. Emerson, Irini J. Adaktylou, 2016, Applied and Environmental Microbiology.

The Irony of Iron – Biogenic Iron Oxides as an Iron Source to the Ocean

D. Emerson, 2016, Front. Microbiol..

An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria

Ivan Erill, S. Campoy, J. Barbé, 2015, Journal of bacteriology.

Using in situ voltammetry as a tool to identify and characterize habitats of iron-oxidizing bacteria: from fresh water wetlands to hydrothermal vent sites.

A. Findlay, C. Chan, D. Emerson, 2014, Environmental science. Processes & impacts.

Morphology of biogenic iron oxides records microbial physiology and environmental conditions: toward interpreting iron microfossils

G. Luther, C. Chan, D. Emerson, 2013, Geobiology.

Biogeochemistry and microbiology of microaerobic Fe(II) oxidation.

D. Emerson, 2012, Biochemical Society transactions.

The Microbial Ferrous Wheel in a Neutral pH Groundwater Seep

E. Roden, G. Luther, D. Emerson, 2012, Front. Microbio..

Neutrophilic Iron-Oxidizing “Zetaproteobacteria” and Mild Steel Corrosion in Nearshore Marine Environments

B. Little, D. Emerson, R. Ray, 2010, Applied and Environmental Microbiology.

A Novel Lineage of Proteobacteria Involved in Formation of Marine Fe-Oxidizing Microbial Mat Communities

T. Lilburn, C. Moyer, C. Chan, 2007, PloS one.

Geochemical control of microbial Fe(III) reduction potential in wetlands: comparison of the rhizosphere to non-rhizosphere soil.

J. Megonigal, D. Emerson, J. Weiss, 2004, FEMS microbiology ecology.

Life at the Energetic Edge: Kinetics of Circumneutral Iron Oxidation by Lithotrophic Iron-Oxidizing Bacteria Isolated from the Wetland-Plant Rhizosphere

J. Megonigal, D. Emerson, S. Neubauer, 2002, Applied and Environmental Microbiology.

Enrichment and isolation of iron-oxidizing bacteria at neutral pH.

D. Emerson, M. Floyd, 2005, Methods in enzymology.

Potential for Iron-reduction and Iron-cycling in Iron Oxyhydroxide-rich Microbial Mats at Loihi Seamount

D. Emerson, 2009 .

Neutrophilic Fe-Oxidizing Bacteria Are Abundant at the Loihi Seamount Hydrothermal Vents and Play a Major Role in Fe Oxide Deposition

C. Moyer, D. Emerson, 2002, Applied and Environmental Microbiology.

Control of ferrous iron oxidation within circumneutral microbial iron mats by cellular activity and autocatalysis.

G. Luther, Charoenkwan Kraiya, Jeremy A. Rentz, 2007, Environmental science & technology.

Investigation of an Iron-Oxidizing Microbial Mat Community Located near Aarhus, Denmark: Field Studies

N. Revsbech, D. Emerson, 1994, Applied and environmental microbiology.

Microbial Oxidation and Reduction of Iron in the Root Zone and Influences on Metal Mobility

J. Megonigal, D. Emerson, S. Neubauer, 2007 .

A Population Survey of Members of the Phylum Bacteroidetes Isolated from Salt Marsh Sediments along the East Coast of the United States

D. Emerson, P. Gillevet, M. Sikaroodi, 2004, Microbial Ecology.

Identification of archaea and some extremophilic bacteria using matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry

P. Krader, D. Emerson, 2004, Extremophiles.

Inventory of cultivatable populations of S-cycling, fermentative, Fe-reducing, and aerobic heterotrophic bacteria from salt marsh sediments

D. Emerson, C. Lydell, 2016, bioRxiv.

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

C. Chan, K. Edwards, D. Emerson, 2011, The ISME Journal.

Iron cycling at corroding carbon steel surfaces

B. Little, Jason S Lee, D. Emerson, 2013, Biofouling.

The role of iron-oxidizing bacteria in biocorrosion: a review

D. Emerson, 2018, Biofouling.

Growth characteristics of microorganisms on commercially available animal-free alternatives to tryptic soy medium.

D. Emerson, D. Cleland, B. Beck, 2007, Journal of microbiological methods.

Quantitative analysis of O2 and Fe2+ profiles in gradient tubes for cultivation of microaerophilic Iron(II)‐oxidizing bacteria

A. Kappler, D. Emerson, G. Druschel, 2018, FEMS microbiology ecology.

Impacts of bioturbation on iron biogeochemistry and microbial communities in coastal sediment mesocosms under varying degrees of hypoxia

P. Girguis, J. P. Beam, D. Emerson, 2022, Estuarine, Coastal and Shelf Science.

Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral

K. Nealson, J. Amend, B. Tully, 2019, Microbiology Resource Announcements.

Nutrition and Media

Jane S Tang, D. Emerson, 2007 .

Isolation, Cultural Maintenance, and Taxonomy of a Sheath-Forming Strain of Leptothrix discophora and Characterization of Manganese-Oxidizing Activity Associated with the Sheath

W. Ghiorse, D. Emerson, 1992, Applied and environmental microbiology.

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

J. G. Kuenen, A. Khodursky, S. Ferriera, 2011, PloS one.

What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH

R. Stepanauskas, M. Martínez-García, N. Poulton, 2011, PloS one.

Characterization of Neutrophilic Fe(II)-Oxidizing Bacteria Isolated from the Rhizosphere of Wetland Plants and Description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov.

T. Lilburn, J. Megonigal, Jeremy A. Rentz, 2007 .

Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH

C. Moyer, D. Emerson, D Emerson, 1997, Applied and environmental microbiology.

Hunter-Gatherers Harvested and Heated Microbial Biogenic Iron Oxides to Produce Rock Art Pigment

D. Stalla, T. White, Xiaoqing He, 2019, Scientific Reports.

Ultrastructure and chemical composition of the sheath of Leptothrix discophora SP-6

W. Ghiorse, D. Emerson, 1993, Journal of bacteriology.

Enumeration of Fe(II)-oxidizing and Fe(III)-reducing bacteria in the root zone of wetland plants: Implications for a rhizosphere iron cycle

J. Megonigal, D. Emerson, J. Weiss, 2003 .

Use of the DiversiLab repetitive sequence-based PCR system for genotyping and identification of Archaea.

P. Krader, D. Emerson, D. Cleland, 2008, Journal of microbiological methods.

Identification of Mycobacteria by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry

Jane Tang, David Emerson, Jason Cooper, 2006, Journal of Clinical Microbiology.

Formation of Metallogenium-like structures by a manganese-oxiding fungus

W. Ghiorse, D. Emerson, R. Garen, 1989, Archives of Microbiology.

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

P. Girguis, J. McCarthy, J. Sanders, 2015, Nature Communications.

A Clark-type oxidase enzyme-based amperometric microbiosensor for sensing glucose, galactose, or choline

Serban F. Peteu, David Emerson, R. Worden, 1996 .

Role of disulfide bonds in maintaining the structural integrity of the sheath of Leptothrix discophora SP-6

W. Ghiorse, D. Emerson, 1993, Journal of bacteriology.

Microbial Iron Mats at the Mid-Atlantic Ridge and Evidence that Zetaproteobacteria May Be Restricted to Iron-Oxidizing Marine Systems

G. Luther, D. Emerson, J. Breier, 2015, PloS one.

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics

Lynne A. Goodwin, T. Woyke, L. Goodwin, 2013, Front. Microbiol..

Decoupling of respiration rates and abundance in marine prokaryoplankton

E. Sintes, R. Stepanauskas, L. Lubelczyk, 2022, Nature.

A genus definition for Bacteria and Archaea based on genome relatedness and taxonomic affiliation

K. Nealson, G. Garrity, D. Emerson, 2018, bioRxiv.

Roadmap for naming uncultivated Archaea and Bacteria

Donovan H. Parks, T. H. Smits, Alexander J. Probst, 2020, Nature Microbiology.

Biological rejuvenation of iron oxides in bioturbated marine sediments

F. Meysman, C. Chan, J. P. Beam, 2018, The ISME Journal.

The role of microaerophilic Fe‐oxidizing micro‐organisms in producing banded iron formations

G. Luther, C. Chan, D. Emerson, 2016, Geobiology.

Iron-Oxidizing Bacteria Are Associated with Ferric Hydroxide Precipitates (Fe-Plaque) on the Roots of Wetland Plants

David Emerson, J. Megonigal, D. Emerson, 1999, Applied and Environmental Microbiology.

Roadmap for naming uncultivated Archaea and Bacteria

Donovan H. Parks, Alexander J. Probst, L. Hug, 2020, Nature Microbiology.

Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.

C. Moyer, D. Emerson, K. Küsel, 2017, The ISME Journal.

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph

B. Orcutt, J. Sylvan, K. Edwards, 2015, Applied and Environmental Microbiology.

Zetaproteobacteria Pan-Genome Reveals Candidate Gene Cluster for Twisted Stalk Biosynthesis and Export

D. Emerson, T. Bayer, O. Bezuidt, 2021, bioRxiv.

Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount

R. Stepanauskas, A. Sczyrba, T. Woyke, 2014, The ISME Journal.

Insights into the Fundamental Physiology of the Uncultured Fe-Oxidizing Bacterium Leptothrix ochracea

A. Sczyrba, T. Woyke, S. Littmann, 2018, Applied and Environmental Microbiology.

The transition from freshwater to marine iron-oxidizing bacterial lineages along a salinity gradient on the Sheepscot River, Maine, USA.

D. Emerson, J. McBeth, E. Fleming, 2013, Environmental microbiology reports.

Anaerobic Metabolism in Tidal Freshwater Wetlands: II. Effects of Plant Removal on Archaeal Microbial Communities

C. Moyer, J. Megonigal, A. Sutton‐Grier, 2013, Estuaries and Coasts.

Deep-Sea Research Part In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at L ō ’ ihi Seamount

D. Emerson, J. Scott, Craig, 2017 .

Bringing microbial diversity into focus: high‐resolution analysis of iron mats from the Lō‘ihi Seamount

B. Glazer, D. Emerson, J. Scott, 2017, Environmental microbiology.

In situ estimates of iron-oxidation and accretion rates for iron-oxidizing bacterial mats at Lō’ihi Seamount

C. Moyer, D. Emerson, J. Scott, 2016, bioRxiv.

Ecological succession among iron-oxidizing bacteria

I. Cetinić, C. Chan, D. King, 2013, The ISME Journal.

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

B. Tebo, C. Moyer, Richard E. Davis, 2011, Applied and Environmental Microbiology.

Captured Diversity in a Culture Collection: Case Study of the Geographic and Habitat Distributions of Environmental Isolates Held at the American Type Culture Collection

Jane Tang, David Emerson, Jane S Tang, 2005, Applied and Environmental Microbiology.

The microbial ferrous wheel: iron cycling in terrestrial, freshwater, and marine environments

E. Roden, D. Emerson, B. Twining, 2012, Front. Microbio..

Ultra-diffuse hydrothermal venting supports Fe-oxidizing bacteria and massive umber deposition at 5000 m off Hawaii

R. Davis, B. Tebo, C. Moyer, 2011, The ISME Journal.

Microbial Oxidation of Fe(II) and Mn(II) at Circumneutral pH

D. Emerson, 2000 .

The response of microbial populations from oil-brine contaminated soil to gradients of NaCl and sodium p-toluate in a diffusion gradient chamber

D. Emerson, J. Breznak, 1997 .

A precision multi-sampler for deep-sea hydrothermal microbial mat studies

D. Gomez-Ibanez, John A. Breier, Emily Reddington, 2012 .

Marine Fe-oxidizing Zetaproteobacteria: Historical, ecological, and genomic perspectives

Ryan M. Moore, G. Luther, C. Chan, 2018, bioRxiv.

Hidden in plain sight: discovery of sheath-forming, iron-oxidizing Zetaproteobacteria at Loihi Seamount, Hawaii, USA.

B. Tebo, C. Moyer, C. Chan, 2013, FEMS microbiology ecology.

Microbiology of Seamounts Common Patt erns Observed in Community Structure

C. Moyer, D. Emerson, 2010 .

Investigation of an Iron-Oxidizing Microbial Mat Community Located near Aarhus, Denmark: Laboratory Studies

N. Revsbech, D. Emerson, 1994, Applied and environmental microbiology.

Bacterial Iron Oxidation in Circumneutral Freshwater Habitats: Findings from the Field and the Laboratory

D. Emerson, J. Weiss, 2004 .

In Situ Microbial Community Succession on Mild Steel in Estuarine and Marine Environments: Exploring the Role of Iron-Oxidizing Bacteria

D. Emerson, J. McBeth, 2016, Front. Microbiol..

on the Roots of Wetland Plants Ferric Hydroxide Precipitates ( Fe-Plaque ) Iron-Oxidizing Bacteria Are Associated with

J. Megonigal, D. Emerson, J. Weiss, 1999 .

Complex pattern formation by Pseudomonas strain KC in response to nitrate and nitrite.

D. Emerson, 1999, Microbiology.

A Diffusion Gradient Chamber for Studying Microbial Behavior and Separating Microorganisms

R. Worden, D. Emerson, J. Breznak, 1994, Applied and environmental microbiology.

Experimental apparatus for selection of adherent microorganisms under stringent growth conditions

M. Shuler, W. Ghiorse, D. Emerson, 1991, Applied and environmental microbiology.

A biological source of marine sedimentary iron oxides

F. Meysman, C. Chan, J. P. Beam, 2017, bioRxiv.

A cost model for ocean iron fertilization as a means of carbon dioxide removal that compares 2 ship- and aerial-based delivery, and estimates verification costs.

D. Emerson, S. Archer, A. Michaud, 2023 .

Modeling microbial chemotaxis in a diffusion gradient chamber.

R. Worden, D. Emerson, C. Chiu, 1997, Biotechnology and bioengineering.

Solid‐State Au/Hg Microelectrode for the Investigation of Fe and Mn Cycling in a Freshwater Wetland: Implications for Methane Production

J. Megonigal, G. Luther, J. Keller, 2007 .

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

P. Girguis, J. McCarthy, J. Sanders, 2015, Nature Communications.

Redox Transformations of Iron at Extremely Low pH: Fundamental and Applied Aspects

D. Johnson, D. Emerson, T. Kanao, 2012, Front. Microbio..

Microbial activity in biogeochemical gradients – new aspects of research

J. Amend, K. Straub, P. Grathwohl, 2005 .

Neutrophilic Iron-Oxidizing “Zetaproteobacteria” and Mild Steel Corrosion in Nearshore Marine Environments

B. Little, D. Emerson, R. Ray, 2010, Applied and Environmental Microbiology.

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

A. Khodursky, S. Ferriera, W. Nelson, 2011, PloS one.

Lithotrophic iron-oxidizing bacteria produce organic stalks to control mineral growth: implications for biosignature formation

C. Chan, K. Edwards, D. Emerson, 2011, The ISME Journal.

Genome Sequence of Geothermobacter sp. Strain HR-1, an Iron Reducer from the Lō‘ihi Seamount, Hawai’i

J. Amend, B. Tully, D. Emerson, 2018, Genome Announcements.