S. Aly

Alison L. Van Eenennaam, S. Aly, P. Rossitto, 2018, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Clinical Mastitis and Culling Outcomes

S. Aly, P. Rossitto, T. Lehenbauer, 2022, Antibiotics.

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: II. Cow health and performance in early lactation.

S. Godden, S. Aly, T. Lehenbauer, 2013, Journal of dairy science.

Preweaning cost of bovine respiratory disease (BRD) and cost-benefit of implementation of preventative measures in calves on California dairies: The BRD 10K study.

Alison L. Van Eenennaam, S. Aly, P. Rossitto, 2019, Journal of dairy science.

Association between herd management practices and antimicrobial resistance in Salmonella spp. from cull dairy cattle in Central California

E. Atwill, Xunde Li, S. Aly, 2019, PeerJ.

Quantification of antibiotic resistance genes and mobile genetic elements in manure from dairy farms in California

B. Weimer, Ruihong Zhang, P. Pandey, 2020 .

Synergistic effects of lactic acid and sodium dodecyl sulfate to decontaminate Escherichia coli O157:H7 on cattle hide sections.

S. Aly, P. Rossitto, J. Cullor, 2013, Foodborne pathogens and disease.

Randomized noninferiority clinical trial evaluating 3 commercial dry cow mastitis preparations: I. Quarter-level outcomes.

S. Godden, S. Aly, T. Lehenbauer, 2013, Journal of dairy science.

Effect of Intramammary Dry Cow Antimicrobial Treatment on Fresh Cow’s Milk Microbiota in California Commercial Dairies

M. Wiedmann, E. Ganda, S. Aly, 2022, Antibiotics.

Epidemiology of antimicrobial resistance (AMR) on California dairies: descriptive and cluster analyses of AMR phenotype of fecal commensal bacteria isolated from adult cows

D. Califano, R. Black, S. Aly, 2021, PeerJ.

Efficacy of spheroplastic and cell-wall competent vaccines for Mycobacterium avium subsp. paratuberculosis in experimentally-challenged baby goats.

D. Giri, D. Hurley, I. Gardner, 2007, Veterinary microbiology.

A novel risk assessment tool for bovine respiratory disease in preweaned dairy calves.

Alison L. Van Eenennaam, D. Williams, S. Aly, 2020, Journal of dairy science.

Association between Mycobacterium avium subspecies paratuberculosis infection and milk production in two California dairies.

I. Gardner, S. Aly, R. J. Anderson, 2010, Journal of dairy science.

Effect of Antimicrobial Treatment on the Dynamics of Ceftiofur Resistance in Enterobacteriaceae from Adult California Dairy Cows

S. Aly, T. Lehenbauer, E. Okello, 2021, Microorganisms.

Effect of continued metabolic acidification into the first 3 days of lactation on blood calcium status in postpartum dairy cattle: A randomized controlled trial.

H. Bang, S. Aly, R. Pereira, 2020, Journal of dairy science.

Prevalence and Level of Enterohemorrhagic Escherichia coli in Culled Dairy Cows at Harvest.

R. Moxley, S. Aly, T. Lehenbauer, 2016, Journal of food protection.

Effectiveness of Intramammary Antibiotics, Internal Teat Sealants, or Both at Dry-Off in Dairy Cows: Milk Production and Somatic Cell Count Outcomes

S. Aly, T. Lehenbauer, E. Okello, 2022, Veterinary sciences.

Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle

E. Atwill, Xunde Li, S. Aly, 2020, PeerJ.

Multidrug residues and antimicrobial resistance patterns in waste milk from dairy farms in Central California.

S. Aly, R. Pereira, B. Karle, 2018, Journal of dairy science.

Evaluation of Mycobacterium avium subsp paratuberculosis infection of dairy cows attributable to infection status of the dam.

M. Thurmond, S. Aly, 2005, Journal of the American Veterinary Medical Association.

Epidemiology of Salmonella sp. in California cull dairy cattle: prevalence of fecal shedding and diagnostic accuracy of pooled enriched broth culture of fecal samples

Xunde Li, S. Aly, P. Rossitto, 2016, PeerJ.

Development of a multiplex qPCR assay for the simultaneous detection of Mycoplasma bovis, Mycoplasma species, and Acholeplasma laidlawii in milk

M. Marco, S. Aly, P. Rossitto, 2021, PeerJ.

Effects of mannan-oligosaccharide and Bacillus subtilis supplementation to preweaning Holstein dairy heifers on body weight gain, diarrhea, and shedding of fecal pathogens.

S. Aly, I. Lean, E. Block, 2021, Journal of dairy science.

Management factors associated with bovine respiratory disease in preweaned calves on California dairies: The BRD 100 study

Alison L. Van Eenennaam, D. Williams, S. Aly, 2019, Journal of Dairy Science.

Regional management practices and prevalence of bovine respiratory disease in California's preweaned dairy calves.

Alison L. Van Eenennaam, D. Williams, S. Aly, 2019, Journal of dairy science.

A randomized controlled trial on preweaning morbidity, growth and mortality in Holstein heifers fed a lacteal-derived colostrum replacer or pooled maternal colostrum

D. Haines, P. Pithua, S. Aly, 2013, BMC Veterinary Research.

A Cohort Study of the Association Between Serum Immunoglobulin G Concentration and Preweaning Health, Growth, and Survival in Holstein Calves

P. Pithua, S. Aly, 2013 .

Bovine respiratory disease (BRD) cause-specific and overall mortality in preweaned calves on California dairies: The BRD 10K study.

Alison L. Van Eenennaam, S. Aly, P. Rossitto, 2019, Journal of dairy science.

Estimating the Rates of Acquisition and loss of Resistance of Enterobacteriaceae to Antimicrobial Drugs in Pre-Weaned Dairy Calves

S. Aly, P. Rossitto, T. Lehenbauer, 2021, Microorganisms.

Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves

Alison L. Van Eenennaam, C. Seabury, J. Womack, 2014, BMC Genomics.

Dairy management practices associated with multi-drug resistant fecal commensals and Salmonella in cull cows: a machine learning approach

E. Atwill, Xunde Li, S. Aly, 2021, PeerJ.

Evaluation of four commercial tests for detecting ceftiofur in waste milk bulk tank samples

M. Belmar, S. Aly, R. Pereira, 2019, PloS one.

Efficacy of feeding a lacteal-derived colostrum replacer or pooled maternal colostrum with a low IgG concentration for prevention of failure of passive transfer in dairy calves.

D. Haines, P. Pithua, S. Aly, 2013, Journal of the American Veterinary Medical Association.

Effectiveness of zinc supplementation on diarrhea and average daily gain in pre-weaned dairy calves: A double-blind, block-randomized, placebo-controlled clinical trial

S. Aly, T. Lehenbauer, J. Champagne, 2019, PloS one.

2018 Survey of factors associated with antimicrobial drug use and stewardship practices in adult cows on conventional California dairies: immediate post-Senate Bill 27 impact

S. Aly, T. Lehenbauer, E. Okello, 2021, PeerJ.

Correlation between Herrold Egg Yolk Medium Culture and Real-Time Quantitative Polymerase Chain Reaction Results for Mycobacterium Avium Subspecies Paratuberculosis in Pooled Fecal and Environmental Samples

Julia M. Smith, Jiming Jiang, J. Karns, 2010, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Cecal infarction in neonatal calves

P. Blanchard, S. Aly, J. Adaska, 2017, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Association between caudal fold tuberculin test responses and results of an ELISA for Mycobacterium avium subsp paratuberculosis and mycobacterial culture of feces in tuberculosis-free dairy herds.

I. Gardner, S. Aly, B. Brito, 2014, Journal of the American Veterinary Medical Association.

Comparison between low-dose, high-sort and high-dose, low-sort semen on conception and calf sex ratio in Jersey heifers and cows.

R. Lenz, S. Aly, T. Lehenbauer, 2014, Journal of dairy science.

Risk factors affecting dairy cattle protective grouping behavior, commonly known as bunching, against Stomoxys calcitrans (L.) on California dairies

S. Aly, T. Lehenbauer, A. Gerry, 2019, PloS one.

Investigation of Anaplasma marginale Seroprevalence in a Traditionally Managed Large California Beef Herd

S. Aly, J. Foley, J. Maas, 2016, Veterinary medicine international.

Whole-Genome Sequencing and Concordance Between Antimicrobial Susceptibility Genotypes and Phenotypes of Bacterial Isolates Associated with Bovine Respiratory Disease

Alison L. Van Eenennaam, Z. Abdo, S. O’Rourke, 2017, G3: Genes, Genomes, Genetics.

Sensitivity and specificity of on-farm scoring systems and nasal culture to detect bovine respiratory disease complex in preweaned dairy calves

Alison L. Van Eenennaam, S. Aly, P. Kass, 2016, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Development of a novel clinical scoring system for on-farm diagnosis of bovine respiratory disease in pre-weaned dairy calves

Alison L. Van Eenennaam, S. Aly, P. Kass, 2014, PeerJ.

Etiology and risk factors for bovine respiratory disease in pre-weaned calves on California dairies and calf ranches.

Deepak, Alison L. Van Eenennaam, B. Crossley, 2021, Preventive veterinary medicine.

Agreement Among 4 Sampling Methods to Identify Respiratory Pathogens in Dairy Calves with Acute Bovine Respiratory Disease

B. Crossley, R. Berghaus, P. Blanchard, 2017, Journal of veterinary internal medicine.

Antibiotic Resistance Genes and Associated Phenotypes in Escherichia coli and Enterococcus from Cattle at Different Production Stages on a Dairy Farm in Central California

Z. Su, E. Atwill, Xunde Li, 2021, Antibiotics.

Quantification of antibiotic resistance genes and mobile genetic in dairy manure

B. Weimer, Ruihong Zhang, N. Nitin, 2021, PeerJ.

Development and comparison of loop-mediated isothermal amplification and quantitative polymerase chain reaction assays for the detection of Mycoplasma bovis in milk.

M. Marco, S. Aly, Zhengyao Xue, 2019, Journal of dairy science.

Stable fly activity is associated with dairy management practices and seasonal weather conditions

S. Aly, T. Lehenbauer, A. Gerry, 2021, PloS one.

Cost-effectiveness of diagnostic strategies using quantitative real-time PCR and bacterial culture to identify contagious mastitis cases in large dairy herds.

S. Aly, T. Lehenbauer, Kiyokazu Murai, 2014, Preventive veterinary medicine.

Effect of Three Colostrum Diets on Passive Transfer of Immunity and Preweaning Health in Calves on a California Dairy following Colostrum Management Training

D. Haines, P. Pithua, S. Aly, 2014, Veterinary medicine international.

Stochastic model of porcine reproductive and respiratory syndrome virus control strategies on a swine farm in the United States.

Andrés Perez, S. Aly, P. Kass, 2014, American journal of veterinary research.

Blood calcium dynamics after prophylactic treatment of subclinical hypocalcemia with oral or intravenous calcium.

S. Aly, N. Silva-del-Río, H. Rossow, 2014, Journal of dairy science.

Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility

J. S. Neibergs, Alison L. Van Eenennaam, R. Schnabel, 2014, Animal Health Research Reviews.

Survey on Antimicrobial Drug Use Practices in California Preweaned Dairy Calves

S. Aly, T. Lehenbauer, E. Okello, 2021, Frontiers in Veterinary Science.

In vitro evaluation of the effect of transport medium, temperature, and time on the recovery of Mannheimia haemolytica and Pasteurella multocida

S. Aly, R. Pereira, T. Lehenbauer, 2023, JDS Communications.

Survey of management practices related to bovine respiratory disease in preweaned calves on California dairies.

Alison L. Van Eenennaam, S. Aly, T. Lehenbauer, 2016, Journal of dairy science.

Reliability of environmental sampling culture results using the negative binomial intraclass correlation coefficient

Jiming Jiang, S. Aly, Jianyang Zhao, 2014, SpringerPlus.

Degradation of antibiotic resistance genes and mobile gene elements in dairy manure anerobic digestion

Ruihong Zhang, P. Pandey, S. Aly, 2021, PloS one.

2018 Survey of antimicrobial drug use and stewardship practices in adult cows on California dairies: post-Senate Bill 27

S. Aly, T. Lehenbauer, E. Okello, 2021, PeerJ.

Modeling highly pathogenic avian influenza transmission in wild birds and poultry in West Bengal, India

Sharif S. Aly, S. Aly, P. Pandit, 2013, Scientific Reports.

Cost-effectiveness of diagnostic strategies to identify Mycobacterium avium subspecies paratuberculosis super-shedder cows in a large dairy herd using antibody enzyme-linked immunosorbent assays, quantitative real-time polymerase chain reaction, and bacterial culture

Jiming Jiang, I. Gardner, S. Aly, 2012, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Environmental sampling to assess the bioburden of Mycobacterium avium subspecies paratuberculosis in drylot pens on California dairies

S. Aly, J. Adaska, Tapakorn Chamchoy, 2019, PeerJ.

A nested compartmental model to assess the efficacy of paratuberculosis control measures on U.S. dairy farms

N. Rhee, P. Pithua, S. Aly, 2018, PloS one.

Off-site rearing of heifers reduces the risk of Mycobacterium avium ssp. paratuberculosis ELISA seroconversion and fecal shedding in a California dairy herd.

I. Gardner, S. Aly, J. Adaska, 2015, Journal of Dairy Science.

Reliability of environmental sampling to quantify Mycobacterium avium subspecies paratuberculosis on California free-stall dairies.

I. Gardner, S. Aly, R. J. Anderson, 2009, Journal of dairy science.

Factors Associated with Antimicrobial Stewardship Practices on California Dairies: One Year Post Senate Bill 27

S. Aly, T. Lehenbauer, E. Okello, 2022, Antibiotics.

2019 Survey of Antimicrobial Drug Use and Stewardship Practices in Adult Cows on California Dairies: Post Senate Bill 27

S. Aly, T. Lehenbauer, E. Okello, 2021, Microorganisms.

Variation in nutrients formulated and nutrients supplied on 5 California dairies.

S. Aly, H. Rossow, 2013, Journal of dairy science.

Decision tree risk analysis for FMD outbreak prevention in Egyptian feedlots.

S. Aly, M. Farouk, Wagdy R ElAshmawy, 2022, Preventive veterinary medicine.

In-vitro antibiotic resistance phenotypes of respiratory and enteric bacterial isolates from weaned dairy heifers in California

J. Wenz, S. Aly, M. Chigerwe, 2021, PloS one.

Phenotypic Antimicrobial Resistance Profiles of E. coli and Enterococcus from Dairy Cattle in Different Management Units on a Central California Dairy

Z. Su, E. Atwill, Xunde Li, 2018 .

Effect of Group Housing of Preweaned Dairy Calves: Health and Fecal Commensal Antimicrobial Resistance Outcomes

S. Aly, T. Lehenbauer, B. Byrne, 2023, Antibiotics.

Sensitivity and specificity of two enzyme-linked immunosorbent assays and a quantitative real-time polymerase chain reaction for bovine paratuberculosis testing of a large dairy herd

S. Aly, R. Whitlock, J. Adaska, 2014 .

Effectiveness of control and preventive measures influenced by pathogen trait evolution: Example of Escherichia coli O157: H7

Xueying Wang, Majid Bani-Yaghoub, Patrick O. Pithua, 2019, J. Comput. Appl. Math..

Development of a clinical scoring system for bovine respiratory disease in weaned dairy calves.

S. Aly, T. Lehenbauer, J. Rowe, 2019, Journal of dairy science.

Effect of dry cow therapy on antimicrobial resistance of mastitis pathogens post-calving

S. Aly, T. Lehenbauer, E. Okello, 2023, Frontiers in veterinary science.

Evaluation of antimicrobial resistance and risk factors for recovery of intrauterine Escherichia coli from cows with metritis on California commercial dairy farms

S. Aly, R. Pereira, B. Byrne, 2022, Scientific Reports.

Jejunal hematoma in cattle

P. Blanchard, S. Aly, F. Uzal, 2014, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Prevalence and Level of Enterohemorrhagic Escherichia coli in Culled Dairy Cows at Harvest.

R. Moxley, S. Aly, T. Lehenbauer, 2016, Journal of food protection.

Antimicrobial Susceptibility in Respiratory Pathogens and Farm and Animal Variables in Weaned California Dairy Heifers: Logistic Regression and Bayesian Network Analyses

S. Aly, M. Chigerwe, Wagdy R ElAshmawy, 2024, Antibiotics.

Management Practices of Bovine Mastitis and Milk Quality on Egyptian Dairies

S. Aly, Y. Hegazy, E. Abdelfattah, 2023, Veterinary sciences.

Whole genome sequence analysis reveals high genomic diversity and potential host-driven adaptations among multidrug-resistant Escherichia coli from pre-weaned dairy calves

E. Atwill, Xunde Li, S. Aly, 2024, Frontiers in microbiology.

Impact of zinc supplementation on phenotypic antimicrobial resistance of fecal commensal bacteria from pre-weaned dairy calves

E. Atwill, Xunde Li, S. Aly, 2024, Scientific reports.