A. Dechesne

发表

Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile

O. Nybroe, U. S. Krüger, A. Dechesne, 2019, Applied and Environmental Microbiology.

Novel Method Reveals a Narrow Phylogenetic Distribution of Bacterial Dispersers in Environmental Communities Exposed to Low-Hydration Conditions

B. Smets, O. Nybroe, U. S. Krüger, 2018, Applied and Environmental Microbiology.

Extended spectrum β-lactamase and carbapenemase genes are substantially and sequentially reduced during conveyance and treatment of urban sewage

S. Sørensen, B. Smets, D. Graham, 2020, bioRxiv.

Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes

S. Sørensen, B. Smets, J. Nesme, 2019, The ISME Journal.

: Plasmids persist in a microbial community by providing fitness benefit to multiple

S. Sørensen, B. Smets, J. Nesme, 2019 .

Does universal 16S rRNA gene amplicon sequencing of environmental communities provide an accurate description of nitrifying guilds?

B. Smets, H. Albrechtsen, Vaibhav Diwan, 2018, Journal of microbiological methods.

Stochastic processes govern invasion success in microbial communities when the invader is phylogenetically close to resident bacteria

B. Smets, H. Albrechtsen, A. Dechesne, 2018, The ISME Journal.

The Porous Surface Model, a Novel Experimental System for Online Quantitative Observation of Microbial Processes under Unsaturated Conditions

D. Or, B. Smets, A. Dechesne, 2008, Applied and Environmental Microbiology.

PhyloSift: phylogenetic analysis of genomes and metagenomes

Henry C. M. Leung, Brian C. Thomas, Ocn, 2014, PeerJ.

Microthrix parvicella abundance associates with activated sludge settling velocity and rheology - Quantifying and modelling filamentous bulking.

B. Plósz, D. Wágner, Elham Ramin, 2015, Water research.

Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review

Shmulik P. Friedman, Dani Or, Barth F. Smets, 2007 .

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

A. G. Pedersen, T. Sicheritz-Pontén, B. Smets, 2017, bioRxiv.

Measuring biogeochemical heterogeneity at the micro scale in soils and sediments

B. Smets, A. Dechesne, L. Pedersen, 2015 .

Determining the Temperature Dependency of Biodegradation Kinetics for 34 Hydrocarbons while Avoiding Chemical and Microbial Confounding Factors.

H. Birch, A. Loibner, P. Mayer, 2021, Environmental science & technology.

Optimal influent N-to-P ratio for stable microalgal cultivation in water treatment and nutrient recovery.

B. Plósz, B. Valverde-Pérez, D. Wágner, 2021, Chemosphere.

Conjugal transfer of catabolic plasmids by damaged bacterial cells: Rescuing genes for pesticide biodegradation

G. Tortella, A. Dechesne, Miguel Martínez, 2021 .

Modulation of microbial community permissiveness towards broad host range conjugative plasmid under metal stress

S. Sørensen, B. Smets, K. Brandt, 2015 .

Novel Assay To Assess Permissiveness of a Soil Microbial Community toward Receipt of Mobile Genetic Elements

B. Smets, J. Sørensen, A. Dechesne, 2010, Applied and Environmental Microbiology.

The effect of spatial heterogeneity on nitrate reduction in soil systems

B. Smets, A. Dechesne, R. Jakobsen, 2015 .

Evidence of co-metabolic bentazone transformation by methanotrophic enrichment from a groundwater-fed rapid sand filter.

B. Smets, C. Prasse, H. Albrechtsen, 2018, Water research.

Modification of Spatial Distribution of 2,4-Dichlorophenoxyacetic Acid Degrader Microhabitats during Growth in Soil Columns

J. Gaudet, G. Grundmann, A. Dechesne, 2004, Applied and Environmental Microbiology.

Genomic profiling of Nitrospira species reveals ecological success of comammox Nitrospira

B. Smets, A. Dechesne, Alejandro Palomo, 2019, bioRxiv.

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

A. G. Pedersen, T. Sicheritz-Pontén, B. Smets, 2018, The ISME Journal.

Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle

B. Smets, Tong Zhang, A. Dechesne, 2022, Environmental microbiome.

Extracellular Polymeric Substances Affecting Pore‐Scale Hydrologic Conditions for Bacterial Activity in Unsaturated Soils

D. Or, A. Dechesne, S. Phutane, 2007 .

Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning

S. Sørensen, B. Smets, J. Kreft, 2022, bioRxiv.

Estimating the Transfer Range of Plasmids Encoding Antimicrobial Resistance in a Wastewater Treatment Plant Microbial Community

S. Sørensen, B. Smets, J. Nesme, 2018 .

Quantification and fate of plasmid-specific bacteriophages in wastewater: Beyond the F-coliphages.

B. Smets, J. Nesme, A. Dechesne, 2022, Water research.

Dramatic loss of comammox Nitrospira associated with long-term nitrite feeding

B. Smets, A. Dechesne, Marta Kinnunen, 2017 .

Establishing drinking water biofilms with varying alpha-diversity?

B. Smets, H. Albrechtsen, A. Dechesne, 2016 .

Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter

B. Smets, H. Albrechtsen, A. Dechesne, 2018, Applied Microbiology and Biotechnology.

Linking biodegradation kinetics, microbial composition and test temperature - Testing 40 petroleum hydrocarbons using inocula collected in winter and summer.

H. Birch, D. Lyon, P. Mayer, 2022, Environmental science. Processes & impacts.

Biodegradation of chemicals tested in mixtures and individually: mixture effects on biodegradation kinetics and microbial composition

H. Birch, P. Mayer, A. Dechesne, 2023, Biodegradation.

Does microbial centimeter-scale heterogeneity impact MCPA degradation in and leaching from a loamy agricultural soil?

B. Smets, P. Binning, A. Johnsen, 2014, The Science of the total environment.

Fine scale spatial variability of microbial pesticide degradation in soil: scales, controlling factors, and implications

B. Smets, A. Dechesne, N. Badawi, 2014, Front. Microbiol..

Biodegradation Kinetics of Fragrances, Plasticizers, UV Filters, and PAHs in a Mixture─Changing Test Concentrations over 5 Orders of Magnitude

H. Birch, P. Mayer, A. Dechesne, 2021, Environmental Science & Technology.

A conceptual framework for invasion in microbial communities

B. Smets, D. Daffonchio, D. Graham, 2016, The ISME Journal.

Nitrotoga is selected over Nitrospira in newly assembled biofilm communities from a tap water source community at increased nitrite loading

B. Smets, H. Albrechtsen, A. Dechesne, 2017, Environmental microbiology.

Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities

B. Smets, A. Dechesne, S. J. Fowler, 2018, Environmental microbiology.

Biofilm thickness controls the relative importance of stochastic and deterministic processes in microbial community assembly in moving bed biofilm reactors

B. Smets, A. Dechesne, E. Torresi, 2023, Interface Focus.

Evolutionary Ecology of Natural Comammox Nitrospira Populations

Otto X. Cordero, B. Smets, A. Dechesne, 2022, mSystems.

Evolutionary Ecology of Natural Comammox Nitrospira Populations

Otto X. Cordero, B. Smets, A. Dechesne, 2020, bioRxiv.

Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

S. Sørensen, B. Smets, K. Brandt, 2016, The ISME Journal.

Hydration-controlled bacterial motility and dispersal on surfaces

Dani Or, Arnaud Dechesne, D. Or, 2010, Proceedings of the National Academy of Sciences.

Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains.

D. Or, B. Smets, A. Dechesne, 2008, FEMS microbiology ecology.

Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community

S. Sørensen, B. Smets, L. Hansen, 2014, The ISME Journal.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2022, Molecular ecology.

Development and validation of a prototype 16S rRNA-based taxonomic microarray for Alphaproteobacteria.

Pascal Simonet, Arnaud Dechesne, T. Vogel, 2006, Environmental microbiology.

Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities

T. Vogel, J. Thioulouse, X. Nesme, 2006, Applied and Environmental Microbiology.

Invasion in microbial communities: Role of community composition and assembly processes

B. Smets, H. Albrechtsen, A. Dechesne, 2017 .

The spatial distribution of exoenzyme activities across the soil micro-landscape, as measured in micro- and macro-aggregates, and ecosystem processes

G. Grundmann, A. Dechesne, N. Nunan, 2015 .

A converging subset of soil bacterial taxa is permissive to the IncP-1 plasmid pKJK5 across a range of soil copper contamination.

S. Sørensen, B. Smets, K. Brandt, 2020, FEMS microbiology ecology.

Nitrospira are abundant ammonia oxidizers in diverse groundwaterfed rapid sand filter communities

B. Smets, A. Dechesne, Paul D. Mines, 2019 .

Underestimation of ammonia‐oxidizing bacteria abundance by amplification bias in amoA‐targeted qPCR

B. Smets, Vaibhav Diwan, A. Dechesne, 2016, Microbial biotechnology.

Transcriptome Dynamics of Pseudomonas putida KT2440 under Water Stress

C. Workman, B. Smets, A. Dechesne, 2011, Applied and Environmental Microbiology.

Evaluation of bioaugmentation with entrapped degrading cells as a soil remediation technology.

B. Smets, P. Binning, Mikołaj Owsianiak, 2010, Environmental science & technology.

Copper-induced stimulation of nitrification in biological rapid sand filters for drinking water production by proliferation of Nitrosomonas spp.

B. Smets, H. Albrechtsen, Vaibhav Diwan, 2019, Environmental science & technology.

Spatial Modeling of Nitrifier Microhabitats in Soil

G. Grundmann, A. Dechesne, F. Bartoli, 2001 .

Stochastic processes govern invasion success in microbial communities when the invader is phylogenetically close to resident bacteria

B. Smets, H. Albrechtsen, A. Dechesne, 2018, The ISME Journal.

Density and distribution of nitrifying guilds in rapid sand filters for drinking water production: Dominance of Nitrospira spp.

B. Smets, H. Albrechtsen, A. Dechesne, 2017, Water research.

A novel method for characterizing the microscale 3D spatial distribution of bacteria in soil

T. Vogel, J. Gaudet, G. Grundmann, 2003 .

Novel assay to measure the plasmid mobilizing potential of mixed microbial communities

B. Smets, A. Dechesne, U. Klümper, 2014, Front. Microbiol..

A nitrate sensitive planar optode; performance and interferences.

B. Smets, A. Dechesne, L. Pedersen, 2015, Talanta.

EMBRACE-WATERS statement: Recommendations for reporting of studies on antimicrobial resistance in wastewater and related aquatic environments

S. Sørensen, D. Stekel, B. Smets, 2021, One health.

Extended-Spectrum β-Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage.

S. Sørensen, B. Smets, D. Graham, 2021, Environmental science & technology.

Protocol for Evaluating the Permissiveness of Bacterial Communities Toward Conjugal Plasmids by Quantification and Isolation of Transconjugants

B. Smets, A. Dechesne, U. Klümper, 2014 .

Toward a Universal Unit for Quantification of Antibiotic Resistance Genes in Environmental Samples.

J. Rose, M. V. van Loosdrecht, M. Blaser, 2023, Environmental science & technology.

Long-term manure exposure increases soil bacterial community potential for plasmid uptake.

J. Magid, B. Smets, A. Dechesne, 2014, Environmental microbiology reports.

Electrochemical disinfection may increase the spread of antibiotic resistance genes by promoting conjugal plasmid transfer.

B. Smets, Hailiang Song, Hua Li, 2022, The Science of the total environment.

Comparative genomics sheds light on niche differentiation and the evolutionary history of comammox Nitrospira

T. Sicheritz-Pontén, B. Smets, A. Dechesne, 2018, The ISME Journal.

Extended-Spectrum -Lactamase and Carbapenemase Genes are Substantially and Sequentially Reduced during Conveyance and Treatment of Urban Sewage

S. Sørensen, B. Smets, D. Graham, 2021 .

Impact of the Microscale Distribution of a Pseudomonas Strain Introduced into Soil on Potential Contacts with Indigenous Bacteria

G. Grundmann, A. Dechesne, F. Bertolla, 2005, Applied and Environmental Microbiology.

Biodegradation in a partially saturated sand matrix: compounding effects of water content, bacterial spatial distribution, and motility.

Philip J Binning, Mikołaj Owsianiak, Arnaud Dechesne, 2010, Environmental science & technology.

Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner

S. Sørensen, B. Smets, K. Brandt, 2016, The ISME Journal.

Magnitude and determinants of plasmid transfer from exogenous donor strains to complex microbial communities

S. Sørensen, B. Smets, K. Brandt, 2015 .

Establishing drinking water biofilms with varying alpha-diversity?

B. Smets, H. Albrechtsen, A. Dechesne, 2016 .

Copper dosing enhances nitrification in biofilters treating groundwater

B. Smets, H. Albrechtsen, Vaibhav Diwan, 2017 .

Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials

C. Workman, B. Smets, T. Tolker-Nielsen, 2014, MicrobiologyOpen.

Microthrix parvicella abundance associates with activated sludge settling velocity and rheology - Quantifying and modelling filamentous bulking.

B. Plósz, D. Wágner, Elham Ramin, 2015, Water research.

Pseudomonad Swarming Motility Is Restricted to a Narrow Range of High Matric Water Potentials

B. Smets, A. Dechesne, 2012, Applied and Environmental Microbiology.

The Pressurized Porous Surface Model: an improved tool to study bacterial behavior under a wide range of environmentally relevant matric potentials.

B. Smets, A. Dechesne, Gamze Gülez, 2010, Journal of microbiological methods.

Transcriptome Dynamics of Pseudomonas putida KT2440 under Water Stress

C. Workman, B. Smets, A. Dechesne, 2011, Applied and Environmental Microbiology.

Methanotrophic oxidation of organic micropollutants and nitrogen upcycling in a hybrid membrane biofilm reactor (hMBfR) for simultaneous O2 and CH4 supply.

B. Smets, H. Andersen, T. Elad, 2023, Water research.

Modelling the Impact of Filamentous Bacteria Abundance in a Secondary Settling Tank: CFD Sub-models Optimization Using Long - term Experimental Data

B. Smets, P. Mikkelsen, M. R. Rasmussen, 2014 .

Effects of Filamentous Bulking on Activated Sludge Rheology and Compression Settling Velocity

B. Smets, B. Plósz, D. Wágner, 2014 .

Long-term manure exposure increases soil bacterial community potential for plasmid uptake.

J. Magid, B. Smets, A. Dechesne, 2014, Environmental microbiology reports.

GRUNDMANN ET AL.: SPATIAL MODELING OF NITRIFIER MICROHABITATS IN SOIL

A. Dechesne, J. Flandrois, R. Kizungu, 2001 .

Short sludge age denitrification as alternative process for energy and nutrient recovery.

B. Smets, B. Valverde-Pérez, A. Dechesne, 2022, Bioresource Technology.

Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter

B. Smets, H. Albrechtsen, A. Dechesne, 2018, Applied Microbiology and Biotechnology.

Horizontal transmission of a multidrug-resistant IncN plasmid isolated from urban wastewater.

J. Nesme, A. Dechesne, Zhuofeng Yu, 2024, Ecotoxicology and environmental safety.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2021, Molecular ecology.