R. Sachdeva

发表

Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters

J. Fuhrman, D. Needham, R. Sachdeva, 2017, The ISME Journal.

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

J. Fuhrman, Jacob A. Cram, Alma E. Parada, 2013, The ISME Journal.

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

D. Caron, Fengzhu Sun, I. Hewson, 2011, The ISME Journal.

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

J. Fuhrman, Jacob A. Cram, Alma E. Parada, 2014, The ISME Journal.

Clades of huge phages from across Earth’s ecosystems

Christine L. Sun, Alex D. Thomas, Alexander J. Probst, 2020, Nature.

Clades of huge phages from across Earth’s ecosystems

Christine L. Sun, Alex D. Thomas, Alexander J. Probst, 2019, bioRxiv.

Borg tandem repeats undergo rapid evolution and are under strong selection to create new intrinsically disordered regions in proteins

J. Banfield, Lucas M. Waldburger, R. Sachdeva, 2022, bioRxiv.

Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists

D. Caron, J. Fuhrman, R. Sachdeva, 2013, The ISME Journal.

Beta diversity of marine bacteria depends on temporal scale.

J. Fuhrman, J. Martiny, A. Martiny, 2013, Ecology.

Perspectives of Certified Registered Nurse Anesthetists on Endoscopy Room Delays

Danny T. Y. Wu, Paul Murdock, R. Sachdeva, 2021, Open Journal of Nursing.

Metagenome-assembled Genomes from the Mediterranean Sea : Ongoing Effort to 1 Generate Genomes from the Tara Oceans Dataset 2 3 Authors 4

Elaina D. Graham, J. Heidelberg, B. Tully, 2016 .

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

J. Fuhrman, Jacob A. Cram, Alma E. Parada, 2013, The ISME Journal.

290 Metagenome-assembled Genomes from the Mediterranean Sea: Ongoing Effort to Generate Genomes from the Tara Oceans Dataset

Elaina D. Graham, J. Heidelberg, B. Tully, 2016 .

Thiocyanate and Organic Carbon Inputs Drive Convergent Selection for Specific Autotrophic Afipia and Thiobacillus Strains Within Complex Microbiomes

J. Banfield, S. Harrison, R. Sachdeva, 2020, bioRxiv.

Borgs are giant genetic elements with potential to expand metabolic capacity

K. Williams, J. Banfield, J. Doudna, 2022, Nature.

Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes

Adair L. Borges, Petar I. Penev, J. Banfield, 2022, Nature Microbiology.

Mosaic Patterns of B-vitamin Synthesis and Utilization in a Natural Marine Microbial Community

J. Fuhrman, M. Moran, S. Gifford, 2018, bioRxiv.

Mosaic Patterns of B-vitamin Synthesis and Utilization in a Natural Marine Microbial Community

J. Fuhrman, M. Moran, S. Gifford, 2018, bioRxiv.

A widespread group of large plasmids in methanotrophic Methanoperedens archaea

Petar I. Penev, J. Banfield, P. Penev, 2022, bioRxiv.

Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data

Benjamin J Tully, J. Heidelberg, K. Heidelberg, 2014, Microbiome.

Stop codon recoding is widespread in diverse phage lineages and has the potential to regulate translation of late stage and lytic genes

Adair L. Borges, J. Banfield, B. Al-Shayeb, 2021, bioRxiv.

Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems

J. Fuhrman, Ting Chen, Vickie Trinh, 2017, Environmental microbiology.

Species- and site-specific genome editing in complex bacterial communities

Benjamin E. Rubin, Adair L. Borges, J. Banfield, 2021, Nature Microbiology.

Rare microbes from diverse Earth biomes dominate community activity

John F. Heidelberg, Barbara J. Campbell, J. Heidelberg, 2019, bioRxiv.

Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design

R. Malmstrom, M. Firestone, B. Hungate, 2020, mSystems.

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

Fengzhu Sun, Jed A Fuhrman, Fengzhu Sun, 2015, The ISME Journal.

290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology

Elaina D. Graham, John F. Heidelberg, Benjamin J. Tully, 2017, bioRxiv.

Targeted Genome Editing of Bacteria Within Microbial Communities

Benjamin E. Rubin, J. Banfield, A. Deutschbauer, 2020, bioRxiv.

Vitamin interdependencies predicted by metagenomics-informed network analyses validated in microbial community microcosms

J. Banfield, Shufei Lei, S. Harrison, 2023, bioRxiv.

Adair L. Borges, J. Banfield, N. Segata, 2021, iScience.

Borgs are giant extrachromosomal elements with the potential to augment methane oxidation

K. Williams, J. Banfield, J. Doudna, 2021, bioRxiv.

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria

Alex D. Thomas, J. Banfield, R. Sachdeva, 2021, mBio.

Species- and site-specific genome editing in complex bacterial communities

Benjamin E. Rubin, Adair L. Borges, J. Banfield, 2021, Nature Microbiology.

Wide distribution of alternatively coded Lak megaphages in animal microbiomes

Adair L. Borges, J. Banfield, N. Segata, 2021, bioRxiv.

Blueprint for a pop-up SARS-CoV-2 testing lab

Megan L Hochstrasser, J. Doudna, P. S. Mitchell, 2020, Nature Biotechnology.

Tandem repeats in giant archaeal Borg elements undergo rapid evolution and create new intrinsically disordered regions in proteins

J. Banfield, Lucas M. Waldburger, R. Sachdeva, 2023, PLoS biology.

Population ecology of nitrifying archaea and bacteria in the Southern California Bight.

J. Fuhrman, J. Beman, R. Sachdeva, 2010, Environmental microbiology.

Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus

Megan L Hochstrasser, M. Petersen, J. Doudna, 2021, medRxiv.

Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in CPR bacteria

J. Banfield, R. Sachdeva, P. T. West, 2021, bioRxiv.

Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires

Scott F. Hickey, J. Banfield, C. Schadt, 2023, bioRxiv.

Methanotrophic Methanoperedens archaea host diverse and interacting extrachromosomal elements

Petar I. Penev, J. Banfield, Shufei Lei, 2023, bioRxiv.

Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus