Daniel R. Hoogestraat

发表

Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture

Noah G. Hoffman, S. Salipante, B. Cookson, 2020, Scientific Reports.

Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling

Stephen J. Salipante, Noah G. Hoffman, Timothy T. Harkins, 2014, Applied and Environmental Microbiology.

Rapid 16S rRNA Next-Generation Sequencing of Polymicrobial Clinical Samples for Diagnosis of Complex Bacterial Infections

Stephen J. Salipante, Jay Shendure, Connor McCoy, 2013, PloS one.

Erratum to Performance comparison of illumina and ion torrent next-generation sequencing platforms for 16s rrna-based bacterial community profiling [Applied and Environmental Microbiology 80, 24, (2014), 7583-7591]

Stephen J. Salipante, Noah G. Hoffman, Timothy T. Harkins, 2016 .

Sequencing Diagnosed by Next-Generation DNA and Actinomyces israelii in Mastoiditis Coinfection of Fusobacterium nucleatum

Stephen J. Salipante, S. Salipante, K. Stephens, 2014 .

Molecular Diagnosis of Actinomadura madurae Infection by 16S rRNA Deep Sequencing

Noah G. Hoffman, S. Salipante, B. Cookson, 2013, Journal of Clinical Microbiology.

Seasonal clustering of sinopulmonary mucormycosis in patients with hematologic malignancies at a large comprehensive cancer center

J. Duchin, D. Fredricks, Daniel R. Hoogestraat, 2017, Antimicrobial Resistance & Infection Control.

Coinfection of Fusobacterium nucleatum and Actinomyces israelii in Mastoiditis Diagnosed by Next-Generation DNA Sequencing

Noah G. Hoffman, S. Salipante, K. Stephens, 2014, Journal of Clinical Microbiology.

Clinical Next Generation Sequencing Outperforms Standard Microbiological Culture for Characterizing Polymicrobial Samples.

Tyler A. Land, Noah G. Hoffman, S. Salipante, 2016, Clinical chemistry.

Molecular Diagnosis of Subcutaneous Pythium insidiosum Infection by Use of PCR Screening and DNA Sequencing

S. Salipante, K. Stephens, B. Cookson, 2011, Journal of Clinical Microbiology.

Rhodococcus fascians infection after haematopoietic cell transplantation: not just a plant pathogen?

K. Stephens, T. Hallstrand, S. Butler-Wu, 2016, JMM case reports.

Molecular diagnosis of cystoisosporiasis using extended-range PCR screening.

B. Cookson, Daniel R. Hoogestraat, D. Sengupta, 2011, The Journal of molecular diagnostics : JMD.

Diagnosis of neurocysticercosis by detection of Taenia solium DNA using a global DNA screening platform.

J. Zunt, B. Cookson, Daniel R. Hoogestraat, 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Multifocal but non‐disseminated phaeohyphomycosis in a healthy man via a unique mechanism: Ejection from motor vehicle accident into a vegetable field in Afghanistan resulting in multiple contaminated skin wounds

Daniel R. Hoogestraat, D. Sengupta, A. Bryan, 2017, Journal of cutaneous pathology.

Incidental identification of Strongyloides stercoralis infection by broad-range 28S rDNA gene sequencing in a patient with a hematolymphoid malignancy.

S. Salipante, K. Stephens, E. Konnick, 2016, Diagnostic microbiology and infectious disease.

Seasonal clustering of sinopulmonary mucormycosis in patients with hematologic malignancies at a large comprehensive cancer center

J. Duchin, D. Fredricks, Daniel R. Hoogestraat, 2017, Antimicrobial Resistance & Infection Control.

Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology

Tyler A. Land, S. Salipante, B. Cookson, 2015, Journal of Clinical Microbiology.

Community Profiling Platforms for 16S rRNA-Based Bacterial Ion Torrent Next-Generation Sequencing Performance Comparison of Illumina and

T. Harkins, T. Kawashima, S. Salipante, 2014 .

Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture

S. Salipante, B. Cookson, L. Cummings, 2020, Scientific Reports.

Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity

J. Shendure, S. Salipante, S. Butler-Wu, 2014, Journal of Clinical Microbiology.

Characterization of a Multidrug-Resistant, Novel Bacteroides Genomospecies

J. Duchin, S. Salipante, S. Butler-Wu, 2015, Emerging infectious diseases.

Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates.

S. Salipante, B. Cookson, L. Cummings, 2014, International journal of medical microbiology : IJMM.

An unusual case of a young patient with Whipple's disease involving the central nervous system.

Daniel R. Hoogestraat, M. Flanagan, D. Sabath, 2017, Clinical neuropathology.

Identifying indels from WGS short reads of haploid genomes distinguishes variant-calling algorithms

S. Salipante, B. Cookson, Daniel R. Hoogestraat, 2022, bioRxiv.

In Silico Evaluation of Variant Calling Methods for Bacterial Whole-Genome Sequencing Assays

S. Salipante, B. Cookson, Daniel R. Hoogestraat, 2023, Journal of clinical microbiology.

Whole genome sequencing indicates Corynebacterium jeikeium comprises 4 separate genomospecies and identifies a dominant genomospecies among clinical isolates.

S. Salipante, B. Cookson, L. Cummings, 2014, International journal of medical microbiology : IJMM.

Bartonella spp. Infections Identified by Molecular Methods, United States

S. Salipante, B. Cookson, Daniel R. Hoogestraat, 2023, Emerging infectious diseases.

Whole-Genome Sequencing for High-Resolution Investigation of Methicillin-Resistant Staphylococcus aureus Epidemiology and Genome Plasticity

J. Shendure, S. Salipante, S. Butler-Wu, 2014, Journal of Clinical Microbiology.