D. Cockburn

发表

Characterization of Microbial Dynamics and Volatile Metabolome Changes During Fermentation of Chambourcin Hybrid Grapes From Two Pennsylvania Regions

H. Hopfer, Hung Li Wang, D. Cockburn, 2021, Frontiers in Microbiology.

Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease.

D. Cockburn, N. Koropatkin, 2016, Journal of molecular biology.

Direct visualization of the enzymatic digestion of a single fiber of native cellulose in an aqueous environment by atomic force microscopy.

J. Dutcher, D. Cockburn, J. Lipkowski, 2010, Langmuir : the ACS journal of surfaces and colloids.

Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes

B. Svensson, Hiroyuki Nakai, D. Cockburn, 2016, PloS one.

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch‐degrader Ruminococcus bromii

E. Bayer, H. Flint, A. Walker, 2017, Environmental microbiology.

Resistant starch: impact on the gut microbiome and health.

D. Cockburn, Peter DeMartino, 2019, Current opinion in biotechnology.

Analysis of surface binding sites (SBSs) in carbohydrate active enzymes with focus on glycoside hydrolase families 13 and 77 — a mini-review

Alison M. Smith, B. Svensson, R. Field, 2014, Biologia.

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes

M. H. Foley, D. Cockburn, N. Koropatkin, 2016, Cellular and Molecular Life Sciences.

Analysis of Surface Binding Sites (SBS) within GH62, GH13, and GH77

B. Svensson, R. Field, Hiroyuki Nakai, 2015 .

Surface binding sites (SBSs), mechanism and regulation of enzymes degrading amylopectin and α-limit dextrins.

B. Svensson, M. Willemoës, P. Hägglund, 2013 .

Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes.

Spencer J. Williams, T. Pons, R. Pickersgill, 2018, Glycobiology.

Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation.

B. Svensson, A. Blennow, D. Cockburn, 2015, International journal of biological macromolecules.

Binding Interactions Between α-glucans from Lactobacillus reuteri and Milk Proteins Characterised by Surface Plasmon Resonance

L. Dijkhuizen, B. Svensson, R. Ipsen, 2012, Food Biophysics.

The Sus operon: a model system for starch uptake by the human gut Bacteroidetes

M. H. Foley, D. Cockburn, N. Koropatkin, 2016, Cellular and Molecular Life Sciences.

An efficient arabinoxylan-debranching α-l-arabinofuranosidase of family GH62 from Aspergillus nidulans contains a secondary carbohydrate binding site

B. Svensson, B. Kragelund, P. Dupree, 2016, Applied Microbiology and Biotechnology.

Impact of mashing protocol on the formation of fermentable sugars from millet in gluten-free brewing.

R. Elias, D. Cockburn, Andrew J. Ledley, 2022, Food chemistry.

Lysozyme activity of the Ruminococcus champanellensis cellulosome.

E. Bayer, I. Mizrahi, H. Flint, 2016, Environmental microbiology.

Modulating the pH-activity profile of cellulase by substitution: replacing the general base catalyst aspartate with cysteinesulfinate in cellulase A from Cellulomonas fimi.

D. Cockburn, C. Vandenende, A. Clarke, 2010, Biochemistry.

Product Analysis of Starch Active Enzymes by TLC

D. Cockburn, N. Koropatkin, 2015 .

Structure and functional roles of surface binding sites in amylolytic enzymes

B. Svensson, D. Cockburn, 2016 .

Production and purification of the isolated family 2a carbohydrate-binding module from Cellulomonas fimi.

D. Cockburn, A. Clarke, Qinxian Zhang, 2009, Protein expression and purification.

Novel carbohydrate binding modules in the surface anchored α‐amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut

B. Henrissat, Z. Wawrzak, D. Cockburn, 2018, Molecular microbiology.

Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale

M. H. Foley, D. Cockburn, N. Koropatkin, 2015, Molecular microbiology.

In vitro Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition

D. Cockburn, June Teichmann, 2021, Frontiers in Microbiology.

Effect of processing on the anti-inflammatory efficacy of cocoa in a high fat diet-induced mouse model of obesity.

H. Hopfer, J. Lambert, D. Cockburn, 2022, The Journal of nutritional biochemistry.

Function of penicillin-binding protein 2 in viability and morphology of Pseudomonas aeruginosa.

D. Cockburn, B. A. Legaree, A. Clarke, 2007, The Journal of antimicrobial chemotherapy.

Modulating the pH-activity profile of cellulase A from Cellulomonas fimi by replacement of surface residues.

D. Cockburn, A. Clarke, 2011, Protein engineering, design & selection : PEDS.

A Bacterial Glucanotransferase Can Replace the Complex Maltose Metabolism Required for Starch to Sucrose Conversion in Leaves at Night*

Oliver Ebenhöh, Birte Svensson, Martin Rejzek, 2013, The Journal of Biological Chemistry.

A Modified Brewing Procedure Informed by the Enzymatic Profiles of Gluten-Free Malts Significantly Improves Fermentable Sugar Generation in Gluten-Free Brewing

H. Hopfer, R. Elias, D. Cockburn, 2021, Beverages.

Structural basis for the flexible recognition of α‐glucan substrates by Bacteroides thetaiotaomicron SusG

H. Brumer, D. Cockburn, N. Koropatkin, 2018, Protein science : a publication of the Protein Society.

The structures of the GH13_36 amylases from Eubacterium rectale and Ruminococcus bromii reveal subsite architectures that favor maltose production

D. Cockburn, N. Koropatkin, C. Bahr, 2020, Amylase.

Microscopic assessment of the degradation of millet starch granules by endogenous and exogenous enzymes during mashing.

G. Ziegler, R. Elias, D. Cockburn, 2023, Carbohydrate polymers.

Additional Resistant Starch from One Potato Side Dish per Day Alters the Gut Microbiota but Not Fecal Short-Chain Fatty Acid Concentrations

P. Kris-Etherton, D. Cockburn, K. Petersen, 2022, Nutrients.

Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions.

B. Svensson, D. Cockburn, C. Wilkens, 2017, Methods in molecular biology.

Surface binding sites in carbohydrate active enzymes: An emerging picture of structural and functional diversity

B. Svensson, D. Cockburn, 2013 .

Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.

E. Bayer, D. Cockburn, N. Koropatkin, 2021, Journal of structural biology.