J. Russel

发表

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

S. Sørensen, H. Bisgaard, M. Rasmussen, 2020, Microbiome.

The T-shirt microbiome is distinct between individuals and shaped by washing and fabric type.

Martin Steen Mortensen, J. Russel, Eva Baggesgaard Sterndorff, 2020, Environmental research.

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids

Shiraz A. Shah, S. Sørensen, R. Garrett, 2019, bioRxiv.

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids

Shiraz A. Shah, S. Sørensen, R. Garrett, 2019, Nucleic acids research.

Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps

S. Sørensen, A. Brejnrod, J. Russel, 2019, Microbial Ecology.

The role of scavenging in the spread of bovine tuberculosis in free-living ferret populations in New Zealand

J. Russel, 2001 .

Antagonism correlates with metabolic similarity in diverse bacteria

S. Sørensen, J. Russel, M. Burmølle, 2017, Proceedings of the National Academy of Sciences.

The developing airway and gut microbiota in early life is influenced by age of older siblings

Shiraz A. Shah, S. Sørensen, K. Bønnelykke, 2022, Microbiome.

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

S. Sørensen, H. Bisgaard, M. Rasmussen, 2020, Microbiome.

Low‐abundant species facilitates specific spatial organization that promotes multispecies biofilm formation

S. Sørensen, J. Russel, M. Burmølle, 2017, Environmental microbiology.

Biofilm cultivation facilitates coexistence and adaptive evolution in an industrial bacterial community

K. Foster, B. Svensson, J. Nesme, 2022, npj Biofilms and Microbiomes.

Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

S. Sørensen, J. Russel, M. Burmølle, 2018, The ISME Journal.

Biofilms can act as plasmid reserves in the absence of plasmid specific selection

T. Tolker-Nielsen, J. Russel, Urvish Trivedi, 2021, NPJ biofilms and microbiomes.

Priority of Early Colonizers but No Effect on Cohabitants in a Synergistic Biofilm Community

S. Sørensen, J. Russel, M. Burmølle, 2019, Front. Microbiol..

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

Peter C. Fineran, Shiraz A. Shah, S. Sørensen, 2021, bioRxiv.

Prophages in the infant gut are largely induced, and may be functionally relevant to their hosts

Shiraz A. Shah, S. Sørensen, H. Bisgaard, 2021, bioRxiv.

The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition.

Shiraz A. Shah, S. Sørensen, H. Bisgaard, 2021, Cell host & microbe.

Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil

Samuel Jacquiod, A. Priemé, F. Ekelund, 2019, The ISME Journal.

CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci.

Shiraz A Shah, Shiraz A. Shah, Jakob Russel, 2020, The CRISPR journal.

Staphylococcus aureus coagulases are exploitable yet stable public goods in clinically relevant conditions

S. Sørensen, K. Rumbaugh, A. Horswill, 2018, Proceedings of the National Academy of Sciences.

CRISPRCasTyper: An automated tool for the identification, annotation and classification of CRISPR-Cas loci

Shiraz A. Shah, Jakob Russel, Rafael Pinilla-Redondo, 2020, bioRxiv.

Micro-scale intermixing: a requisite for stable and synergistic co-establishment in a four-species biofilm

S. Sørensen, J. Russel, M. Burmølle, 2018, The ISME Journal.

IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage

S. Sørensen, B. Smets, J. Nesme, 2022, Molecular ecology.

Deciphering links between bacterial interactions and spatial organization in multispecies biofilms

S. Sørensen, A. Brejnrod, Samuel Jacquiod, 2019, The ISME Journal.

Coexistence facilitates interspecific biofilm formation in complex microbial communities.

S. Sørensen, Helle Sørensen, J. Russel, 2016, Environmental microbiology.

Unexpected diversity among small-scale sample replicates of defined plant root compartments

S. Sørensen, J. Russel, J. Madsen, 2021, The ISME Journal.

The role of plasmids in the gut microbiome during the first year of life

S. Sørensen, J. Nesme, J. Russel, 2023, bioRxiv.

DAtest: a framework for choosing differential abundance or expression method

Hans Bisgaard, Asker Brejnrod, Søren J. Sørensen, 2018, bioRxiv.

Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition

Shiraz A. Shah, H. Bisgaard, M. Rasmussen, 2023, bioRxiv.

Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes

S. Sørensen, J. Nesme, J. Russel, 2021, mBio.

Conjugative dissemination of plasmids in rapid sand filters: a trojan horse strategy to enhance pesticide degradation in groundwater treatment

S. Sørensen, J. Nesme, J. Russel, 2020, bioRxiv.

Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans

Chase L. Beisel, S. Sørensen, E. Rocha, 2023, bioRxiv.