S. Otani

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Gut microbial compositions mirror caste‐specific diets in a major lineage of social insects

M. Poulsen, S. Otani, M. Zhukova, 2018, bioRxiv.

Complementary symbiont contributions to plant decomposition in a fungus-farming termite

Jun Wang, D. Aanen, Yong Zhang, 2014, Proceedings of the National Academy of Sciences.

Hemimetabolous genomes reveal molecular basis of termite eusociality

Monica F. Poelchau, R. Gibbs, E. Bornberg-Bauer, 2017, Nature Ecology & Evolution.

Hemimetabolous genomes reveal molecular basis of termite eusociality

R. Gibbs, E. Bornberg-Bauer, D. Muzny, 2017, bioRxiv.

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

James J. Davis, O. Lund, F. Aarestrup, 2022, mSystems.

Gut microbial compositions mirror caste-specific diets in a major lineage of eusocial insects

M. Poulsen, S. Otani, M. Zhukova, 2018, bioRxiv.

Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment

S. Sørensen, L. Hansen, M. Poulsen, 2015, Microbial Ecology.

Using DNA-tagged mutagenesis to improve heterologous protein production in Aspergillus oryzae.

S. Brown, S. Otani, R. Munds, 2000, Fungal genetics and biology : FG & B.

A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle

F. Aarestrup, M. Desvaux, S. Leroy, 2022, Microbiome.

FI: The Fecobiome Initiative

Bradd J. Haley, F. Aarestrup, G. Tsiamis, 2021, Foodborne pathogens and disease.

Pycnoscelus surinamensis cockroach gut microbiota respond consistently to a fungal diet without mirroring those of fungus-farming termites

M. Poulsen, S. Otani, A. Mikaelyan, 2017, PloS one.

Pseudoxylallemycins A-F, Cyclic Tetrapeptides with Rare Allenyl Modifications Isolated from Pseudoxylaria sp. X802: A Competitor of Fungus-Growing Termite Cultivars.

D. Aanen, M. Poulsen, S. Otani, 2016, Organic letters.

A Peek into the Plasmidome of Global Sewage

F. Aarestrup, S. Otani, S. J. Pamp, 2021, bioRxiv.

Detection of specific uncultured bacteriophages by fluorescence in situ hybridisation in pig microbiome

F. Aarestrup, S. Otani, P. Munk, 2022, bioRxiv.

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Simon H. Tausch, S. Otani, J. Hammerl, 2021, Microorganisms.

The Enterobacterium Trabulsiella odontotermitis Presents Novel Adaptations Related to Its Association with Fungus-Growing Termites

Guy Plunkett, N. Perna, M. Poulsen, 2015, Applied and Environmental Microbiology.

Identifying the core microbial community in the gut of fungus‐growing termites

S. Sørensen, D. Aanen, J. Boomsma, 2014, Molecular ecology.

Global Distribution and Diversity of Prevalent Sewage Water Plasmidomes

F. Aarestrup, S. Otani, Frederik Teudt, 2022, bioRxiv.

Deletion of the trichodiene synthase gene of Fusarium venenatum: two systems for repeated gene deletions.

G. Gambetta, S. Otani, A. V. Klotz, 1999, Fungal genetics and biology : FG & B.

Disease-free monoculture farming by fungus-growing termites

D. Aanen, M. Poulsen, S. Otani, 2019, Scientific Reports.

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

James J. Davis, O. Lund, F. Aarestrup, 2021, bioRxiv.

Interplay between strain fitness and transmission frequency determines prevalence of antimicrobial resistance

F. Aarestrup, C. Brinch, S. Otani, 2023, Frontiers in Ecology and Evolution.

Evaluating the usefulness of next-generation sequencing for herb authentication

P. Leekitcharoenphon, S. Otani, F. Aarestrup, 2021, Food chemistry. Molecular sciences.

Transitional Complexity of Social Insect Immunity

S. Otani, N. Bos, S. H. Yek, 2016, Front. Ecol. Evol..

Host innate immune responses and microbiome profile of neonatal calves challenged with Cryptosporidium parvum and the effect of bovine colostrum supplementation

A. Dufour, E. Cobo, S. Otani, 2023, Frontiers in Cellular and Infection Microbiology.

Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage

F. Aarestrup, C. Manaia, S. Otani, 2023, FEMS microbes.

Bacterial communities in termite fungus combs are comprised of consistent gut deposits and contributions from the environment

S. Sørensen, L. Hansen, M. Poulsen, 2015, Microbial Ecology.

Foodborne Pathogen Dynamics in Meat and Meat Analogues Analysed Using Traditional Microbiology and Metagenomic Sequencing

A. De Cesare, S. Otani, F. Aarestrup, 2023, Antibiotics.

Transmission of antimicrobial resistance in the gut microbiome of gregarious cockroaches: the importance of interaction between antibiotic exposed and non-exposed populations

S. Otani, F. Aarestrup, A. Bogri, 2023, mSystems.

The resistomes of rural and urban pigs and poultry in Ghana

F. Aarestrup, S. Otani, Emilie Egholm Bruun Jensen, 2023, mSystems.

A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities.

P. Leekitcharoenphon, T. Møretrø, S. Langsrud, 2024, Infection, Genetics and Evolution.

Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance

J. Stéger, T. Sironen, S. Otani, 2024, Nature communications.

Time-series sewage metagenomics can separate the seasonal, human-derived and environmental microbial communities, holding promise for source-attributed surveillance

J. Stéger, T. Sironen, S. Otani, 2024, bioRxiv.

The first complete genome sequence of Staphylococcus aureus ST5477

P. Leekitcharoenphon, S. Otani, Judit Szarvas, 2024, Microbiology resource announcements.