Nidhi Shah

发表

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

Daniel J. Nasko, Daniel D. Sommer, Brian D. Ondov, 2018, Microbiome.

23 : 2 Outlier Detection in BLAST Hits 1 Introduction

S. Altschul, M. Pop, Nidhi Shah, 2017 .

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows

Mihai Pop, Tandy J. Warnow, Nidhi Shah, 2018, Bioinform..

A critical assessment of gene catalogs for metagenomic analysis

Mihai Pop, Jay Ghurye, Michael P. Cummings, 2021, Bioinform..

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

Daniel J. Nasko, Anthony D. Kappell, M. Pop, 2021, Genome Biology.

TIPP2: metagenomic taxonomic profiling using phylogenetic markers

Mihai Pop, Tandy J. Warnow, Erin K. Molloy, 2021, Bioinform..

Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019

Mihai Pop, Winston Timp, Daniel J. Nasko, 2019, mSystems.

Embracing Ambiguity in the Taxonomic Classification of Microbiome Sequencing Data

Mihai Pop, Nidhi Shah, Jacquelyn S. Meisel, 2019, Front. Genet..

Outlier detection in BLAST hits

Mihai Pop, Nidhi Shah, Stephen F. Altschul, 2018, Algorithms for Molecular Biology.

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

Daniel J. Nasko, Anthony D. Kappell, M. Pop, 2022, Genome Biology.

SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest

Madeline Diep, Mihai Pop, Todd J. Treangen, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Outlier detection in BLAST hits

S. Altschul, M. Pop, Nidhi Shah, 2018, Algorithms for Molecular Biology.

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

Daniel J. Nasko, Daniel D. Sommer, Brian D. Ondov, 2018, Microbiome.

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index

Michael Muchow, Robert A Edwards, Ward Deboutte, 2020, Viruses.

metagenomeFeatures: An R package for working with 16S rRNA reference databases and marker-gene survey feature data

Héctor Corrada Bravo, Joseph N. Paulson, Jayaram Kancherla, 2018, bioRxiv.

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Jacquelyn S. Meisel, Jacquelyn Meisel, Nidhi Shah, 2021, Frontiers in Microbiology.