Hans-Joachim Ruscheweyh

发表

Integrative analysis of environmental sequences using MEGAN4.

S. Schuster, D. Huson, S. Mitra, 2011, Genome research.

Microbial abundance, activity and population genomic profiling with mOTUs2

Peer Bork, Shinichi Sunagawa, Pascal Hingamp, 2019, Nature Communications.

Trophic Interactions of Infant Bifidobacteria and Eubacterium hallii during L-Fucose and Fucosyllactose Degradation

N. Beerenwinkel, C. Lacroix, C. Schwab, 2017, Front. Microbiol..

Methods for large-scale Microbiome Analysis using MEGAN

Hans-Joachim Ruscheweyh, 2015 .

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Luis Pedro Coelho, G. Cochrane, P. Bork, 2019, Cell.

Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Corinne Da Silva, S. Sunagawa, J. Poulain, 2022, Scientific data.

Biosynthetic potential of the global ocean microbiome

Tom O. Delmont, P. Bork, S. Sunagawa, 2022, Nature.

The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation

N. Beerenwinkel, C. Lacroix, C. Schwab, 2016, Front. Microbiol..

Terrestrial and marine influence on atmospheric bacterial diversity over the north Atlantic and Pacific Oceans

S. Sunagawa, J. Poulain, P. Wincker, 2022, Communications Earth & Environment.

Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women

C. Schwab, Hans-Joachim Ruscheweyh, M. Hansen, 2022, Journal of Functional Foods.

Impact of manipulation of glycerol/diol dehydratase activity on intestinal microbiota ecology and metabolism.

A. Pascual-García, F. Constancias, Jianbo Zhang, 2021, Environmental microbiology.

Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

P. Bork, S. Sunagawa, D. Mende, 2022, Microbiome.

The rumen microbiome inhibits methane formation through dietary choline supplementation

S. Sunagawa, M. Kreuzer, M. Ebert, 2021, Scientific Reports.

Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

S. Sunagawa, Jianbo Zhang, C. Lacroix, 2019, BMC Microbiology.

Endotoxicity of lipopolysaccharide as a determinant of T-cell-mediated colitis induction in mice.

P. Adam, A. Gruber, D. Huson, 2014, Gastroenterology.

Genome-guided design of a defined mouse microbiota that 1 confers colonization resistance against Salmonella enterica 2 serovar Typhimurium 3

Philipp C. Münch, D. Huson, A. Mchardy, 2018 .

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

Daniel H. Huson, Anna Górska, Suparna Mitra, 2016, PLoS Comput. Biol..

Bioinformatics for precision oncology

Niko Beerenwinkel, Jochen Singer, Hans-Joachim Ruscheweyh, 2017, Briefings Bioinform..

Microbial abundance, activity and population genomic profiling with mOTUs2

Luis Pedro Coelho, P. Bork, S. Sunagawa, 2019, Nature Communications.

Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis.

D. Huson, B. Stecher, J. Baines, 2019, Cell host & microbe.

Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma

Christos M. Dimitrakopoulos, Jonas Behr, N. Beerenwinkel, 2021, BMC genomics.

Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

S. Sunagawa, Jianbo Zhang, C. Lacroix, 2019, BMC Microbiology.

Critical Assessment of Metagenome Interpretation: the second round of challenges

K. Reinert, E. Eskin, F. Beghini, 2021, Nature Methods.

Intestinal Dysbiosis, Barrier Dysfunction, and Bacterial Translocation Account for CKD-Related Systemic Inflammation.

D. Huson, B. Stecher, H. Anders, 2017, Journal of the American Society of Nephrology : JASN.

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

G. Cochrane, P. Bork, S. Sunagawa, 2022, Science.

Extended taxonomic profiling of diverse environments with mOTUs 2.6

S. Sunagawa, D. Mende, G. Zeller, 2021 .

Reference genome-independent taxonomic profiling of microbiomes with mOTUs3

P. Bork, S. Sunagawa, D. Mende, 2022, bioRxiv.

mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities

S. Sunagawa, D. Mende, G. Zeller, 2021, Current protocols.

Uncharted biosynthetic potential of the ocean microbiome

Tom O. Delmont, P. Bork, S. Sunagawa, 2021, bioRxiv.

Improved metagenome analysis using MEGAN5

D. Huson, Hans-Joachim Ruscheweyh, M. Hadidi, 2013 .

mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes

Falk Hildebrand, Shinichi Sunagawa, Silvia G. Acinas, 2021, Bioinform..

High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains

S. Sunagawa, W. Hardt, Hans-Joachim Ruscheweyh, 2021, Microbiome.

Methylation of CpG 5962 in L1 of the human papillomavirus 16 genome as a potential predictive marker for viral persistence: A prospective large cohort study using cervical swab samples

S. Kjaer, D. Huson, T. Iftner, 2019, Cancer medicine.

Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting

Sai T Reddy, Simon Friedensohn, Jakub Straszewski, 2016, Science Advances.

A cross-biomes bacterial diversity shed light on ocean-atmosphere microbial transmission

S. Sunagawa, J. Poulain, P. Wincker, 2021, bioRxiv.

Airborne bacteria over the oceans shed light on global biogeodiversity patterns

S. Sunagawa, J. Poulain, P. Wincker, 2021 .

Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

Diversity of the Pacific Ocean coral reef microbiome

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis

Bernd Rinn, Niko Beerenwinkel, Thomas Wüst, 2017, Bioinform..

Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

S. Sunagawa, J. Poulain, P. Wincker, 2023, Nature communications.

Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium

Philipp C. Münch, D. Huson, A. Mchardy, 2016, Nature Microbiology.

Anaerobutyricum hallii promotes the functional depletion of a food carcinogen in diverse healthy fecal microbiota

F. Constancias, C. Schwab, A. Greppi, 2023, Frontiers in Microbiomes.

From microbiome composition to functional engineering, one step at a time

Alan R. Pacheco, Sara Mitri, V. Hatzimanikatis, 2023, Microbiology and molecular biology reviews : MMBR.

Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

S. Sunagawa, J. Poulain, E. Boss, 2023, Communications biology.