D. Bayles

Heather K. Allen, C. Tuggle, S. Bearson, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Draft Genome Sequences of 63 Swine-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from the United States

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates Obtained from Humans after Short-Term Swine Contact

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

Draft Genome Sequences of 14 Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolates from Swine Farms in the United States

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

Complete Genome Sequence of a Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolate from the United States

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

Draft Genome Sequences of Nine Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 5 Isolates from Humans with Long-Term Swine Contact

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

The CsgA and Lpp Proteins of an Escherichia coli O157:H7 Strain Affect HEp-2 Cell Invasion, Motility, and Biofilm Formation

D. Bayles, D. Mosier, G. Uhlich, 2009, Infection and Immunity.

DNA sequence and analysis of a 90.1-kb plasmid in Shiga toxin-producing Escherichia coli (STEC) O145:NM 83-75.

P. Fratamico, D. Bayles, Xianghe Yan, 2012, Plasmid.

Haemophilus parasuis exhibits IgA protease activity but lacks homologs of the IgA protease genes of Haemophilus influenzae.

D. Bayles, J. Butler, K. Register, 2011, Veterinary microbiology.

Temporal dynamics of 'HoBi'-like pestivirus quasispecies in persistently infected calves generated under experimental conditions.

C. Canal, D. Bayles, F. V. Bauermann, 2017, Virus research.

Comparison of 'HoBi'-like viral populations among persistent infected calves generated under experimental conditions and to inoculum virus.

C. Canal, D. Bayles, F. V. Bauermann, 2016, Virology.

Characterization of an NaCl-sensitive Staphylococcus aureus mutant and rescue of the NaCl-sensitive phenotype by glycine betaine but not by other compatible solutes

D. Bayles, R. Jayaswal, B. Wilkinson, 1997, Applied and environmental microbiology.

Proteomic dataset comparing strains of Leptospira borgpetersenii serovar Hardjo cultured at different temperatures

E. Putz, J. Lippolis, J. Nally, 2022, Data in brief.

Comparative analysis of signature genes in PRRSV-infected porcine monocyte-derived cells to different stimuli

F. Blecha, Y. Sang, Xiangdong Li, 2017, PloS one.

A divergent clade of circular single-stranded DNA viruses from pig feces

T. Ng, E. Delwart, D. Alt, 2013, Archives of Virology.

Genomic and proteomic characterization of SuMu, a Mu-like bacteriophage infecting Haemophilus parasuis

D. Bayles, L. Tabatabai, E. S. Zehr, 2012, BMC Genomics.

Leptospira borgpetersenii serovar Hardjo and Leptospira santarosai serogroup Pyrogenes isolated from bovine dairy herds in Puerto Rico

J. Nally, D. Bayles, R. Galloway, 2022, Frontiers in Veterinary Science.

Emerging Infectious Disease Implications of Invasive Mammalian Species: The Greater White-Toothed Shrew (Crocidura russula) Is Associated With a Novel Serovar of Pathogenic Leptospira in Ireland

A. Mcdevitt, B. J. McMahon, J. Nally, 2016, PLoS neglected tropical diseases.

Complete Genome Sequence of Leptospira alstonii Serovar Room22 Strain GWTS #1

D. Hurley, B. J. McMahon, J. Nally, 2016, Genome Announcements.

The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome

Daniel J. Nasko, Heather K. Allen, A. Howe, 2017, mBio.

Sequence and phylogenetic analysis of the Rhizobium leguminosarum biovar trifolii pyrE gene, overproduction, purification and characterization of orotate phosphoribosyltransferase.

D. Bayles, T. A. Hughes, G. Fennington, 1997, Gene.

Biochemical and molecular characterization of Treponema phagedenis-like spirochetes isolated from a bovine digital dermatitis lesion

R. Zuerner, D. Alt, D. Bayles, 2013, BMC Microbiology.

Comparison of the breadth and complexity of bovine viral diarrhea (BVDV) populations circulating in 34 persistently infected cattle generated in one outbreak.

S. Kane, D. Bayles, D. Young, 2015, Virology.

Lesion Material From Treponema-Associated Hoof Disease of Wild Elk Induces Disease Pathology in the Sheep Digital Dermatitis Model

S. Olsen, D. Alt, D. Bayles, 2022, Frontiers in Veterinary Science.

Critical role of anteiso-C15:0 fatty acid in the growth of Listeria monocytogenes at low temperatures

D. Bayles, B. Annous, D. Labeda, 1997, Applied and environmental microbiology.

Analysis of the swine tracheobronchial lymph node transcriptomic response to infection with a Chinese highly pathogenic strain of porcine reproductive and respiratory syndrome virus

K. Lager, D. Fleming, D. Bayles, 2012, BMC Veterinary Research.

Draft Genome Sequence of the Bordetella bronchiseptica Swine Isolate KM22

T. Nicholson, R. Kingsley, D. Bayles, 2014, Genome Announcements.

Identification and molecular cloning of a novel porcine parvovirus

A. Vincent, David Wang, K. Lager, 2010, Archives of Virology.

Identification of BVDV2b and 2c subgenotypes in the United States: Genetic and antigenic characterization.

D. Bayles, J. Bai, J. Neill, 2019, Virology.

Genome sequence of Haemophilus parasuis strain 29755

G. Phillips, D. Bayles, D. Dyer, 2011, Standards in genomic sciences.

Comparison of the Cecal Microbiota of Domestic and Wild Turkeys

D. Bayles, E. Bent, T. Patton, 2008, Microbial Ecology.

Postinfectious irritable bowel syndrome: a long-term consequence of bacterial gastroenteritis.

D. Bayles, JAMES L. Smith, James L. Smith, 2007, Journal of food protection.

Salmonella DIVA vaccine reduces disease, colonization and shedding due to virulent S. Typhimurium infection in swine

S. Bearson, D. Bayles, B. Brunelle, 2017, Journal of medical microbiology.

Characterization and Comparative Analysis of the Genes Encoding Haemophilus parasuis Outer Membrane Proteins P2 and P5

T. Nicholson, G. Phillips, D. Bayles, 2009, Journal of bacteriology.

Inactivation of the Crp/Fnr family of regulatory genes in Listeria monocytogenes strain F2365 does not alter its heat resistance at 60 degrees C.

D. Bayles, G. Uhlich, 2006, Journal of food protection.

Bovine Leptospirosis Due to Persistent Renal Carriage of Leptospira borgpetersenii Serovar Tarassovi

E. Putz, J. Sahl, J. Nally, 2022, Frontiers in Veterinary Science.

Distinct transcriptional profiles of Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203 cultured at different temperatures

E. Putz, J. Lippolis, D. Alt, 2021, PLoS neglected tropical diseases.

Isolation and characterization of pathogenic leptospires associated with cattle.

D. Alt, J. Nally, D. Palmquist, 2018, Veterinary microbiology.

The Contribution of Cytolethal Distending Toxin to Bacterial Pathogenesis

D. Bayles, Darrell O Bayles, JAMES L. Smith, 2006, Critical reviews in microbiology.

Improved DNA Amplification of the Hallmark IS900 Element in Mycobacterium avium subsp. paratuberculosis: a Reexamination Based on Whole-Genome Sequence Analysis

J. Stabel, D. Bayles, J. Bannantine, 2023, Applied and environmental microbiology.

Osteopontin: a novel cytokine involved in the regulation of Mycobacterium avium subspecies paratuberculosis infection in periparturient dairy cattle.

E. Karcher, J. Stabel, D. Bayles, 2008, Journal of dairy science.

Genetic and antigenic characterization of H1 influenza viruses from United States swine from 2008

A. Vincent, M. Gramer, Derek J. Smith, 2011, The Journal of general virology.

Complete genome sequence of Ornithobacterium rhinotracheale strain ORT-UMN 88

D. Bayles, L. Tabatabai, K. Register, 2014, Standards in genomic sciences.

Non-contiguous finished genome sequence of Ornithobacterium rhinotracheale strain H06-030791

D. Bayles, L. Tabatabai, K. Register, 2014, Standards in genomic sciences.

Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene

Heather K. Allen, T. Nicholson, S. Bearson, 2016, BMC Research Notes.

Function and Phylogeny of Bacterial Butyryl Coenzyme A:Acetate Transferases and Their Diversity in the Proximal Colon of Swine

Heather K. Allen, T. Looft, H. Allen, 2016, Applied and Environmental Microbiology.

Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine

V. Sharma, D. Bayles, Suryatej Akavaram, 2022, BMC Genomics.

Changes Introduced in the Open Reading Frame of Bovine Viral Diarrhea Virus During Serial Infection of Pregnant Swine

D. Bayles, K. Riddell, J. Neill, 2020, Frontiers in Microbiology.

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

Heather K. Allen, B. Cantarel, B. Henrissat, 2014, The ISME Journal.

Diagnostic Sequences That Distinguish M. avium Subspecies Strains

J. Stabel, D. Bayles, J. Bannantine, 2021, Frontiers in Veterinary Science.

Population Genomic Analysis of Mycoplasma bovis Elucidates Geographical Variations and Genes associated with Host-Types

J. Scaria, D. Alt, J. Christopher-Hennings, 2020, Microorganisms.

Complete Genome Sequences of 16 Mycoplasma bovis Isolates from Canadian Bison and Cattle

D. Alt, D. Bayles, M. Suleman, 2020, Microbiology Resource Announcements.

Comparison of Two Multilocus Sequence Typing Schemes for Mycoplasma bovis and Revision of the PubMLST Reference Method

D. Alt, D. Bayles, P. Pilo, 2020, Journal of Clinical Microbiology.

Genomic and antigenic characterization of a cytopathic bovine viral diarrhea virus 1i isolated in the United States.

M. Killian, S. Hietala, B. Crossley, 2019, Virology.

Estimation of viral richness from shotgun metagenomes using a frequency count approach

John Bunge, James A Foster, J. Foster, 2013, Microbiome.

Pathogenicity and Transmission in Pigs of the Novel A(H3N2)v Influenza Virus Isolated from Humans and Characterization of Swine H3N2 Viruses Isolated in 2010-2011

R. Webby, A. Vincent, P. Gauger, 2012, Journal of Virology.

Swine H3N2 Viruses Isolated in 2010-2011 from Humans and Characterization of Isolated the Novel A(H3N2)v Influenza Virus Pathogenicity and Transmission in Pigs of

R. Webby, A. Vincent, P. Gauger, 2012 .

Diversity of viruses detected by deep sequencing in pigs from a common background

T. Ng, E. Delwart, D. Alt, 2012, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Complete Genome Sequence of Leptospira interrogans Serovar Bratislava, Strain PigK151

N. Hall, A. Darby, A. Radford, 2015, Genome Announcements.

Coincidence cloning recovery of Brucella melitensis RNA from goat tissues: advancing the in vivo analysis of pathogen gene expression in brucellosis

S. Olsen, P. Boggiatto, D. Alt, 2018, BMC Molecular Biology.

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

David A Rasko, Jacques Ravel, Samuel V. Angiuoli, 2004, Nucleic acids research.

Severity of bovine tuberculosis is associated with innate immune-biased transcriptional signatures of whole blood in early weeks after experimental Mycobacterium bovis infection

M. Palmer, P. Boggiatto, D. Bayles, 2020, PloS one.

Genome Report—A Genome Sequence Analysis of the RB51 Strain of Brucella abortus in the Context of Its Vaccine Properties

S. Olsen, B. Bricker, D. Alt, 2020, G3: Genes, Genomes, Genetics.

Virulence and Draft Genome Sequence Overview of Multiple Strains of the Swine Pathogen Haemophilus parasuis

T. Nicholson, G. Phillips, D. Bayles, 2014, PloS one.

Survival of Listeria monocytogenes strain H7762 and resistance to simulated gastric fluid following exposure to frankfurter exudate.

D. Bayles, L. Wonderling, 2004, Journal of food protection.

Survival of Listeria monocytogenes Strain H7762 and Resistance to Simulated Gastric Fluid following Exposure to

D. Bayles, L. Wonderling, 2004 .

Comparative Virulence and Genomic Analysis of Streptococcus suis Isolates

Tavis K. Anderson, T. Nicholson, M. Eppinger, 2021, Frontiers in Microbiology.

Complete Genome Sequence of Bordetella bronchiseptica Strain KM22

T. Nicholson, D. Bayles, Sarah M. Shore, 2020, Microbiology Resource Announcements.

Large scale parallel pyrosequencing technology: PRRSV strain VR-2332 nsp2 deletion mutant stability in swine.

D. Alt, K. Lager, D. Bayles, 2011, Virus research.

Effects of suspension in emulsified wiener or incubation in wiener packages on the virulence of Listeria monocytogenes Scott A in intragastrically inoculated A/J mice.

M. Tamplin, C. Czuprynski, D. Bayles, 2005, Journal of food protection.

Effects of Suspension in Emulsified Wiener or Incubation in Packages on the Virulence of Listeria monocytogenes Scott A in Intragastrically Inoculated A/J Mice

M. Tamplin, C. Czuprynski, D. Bayles, 2005 .

A Cold-Sensitive Listeria monocytogenes Mutant Has a Transposon Insertion in a Gene Encoding a Putative Membrane Protein and Shows Altered (p)ppGpp Levels

D. Bayles, Siqing Liu, B. Wilkinson, 2006, Applied and Environmental Microbiology.

Precursor and temperature modulation of fatty acid composition and growth of Listeria monocytogenes cold-sensitive mutants with transposon-interrupted branched-chain alpha-keto acid dehydrogenase.

D. Bayles, Kun Zhu, R. Jayaswal, 2005, Microbiology.

Complete Genome Sequence of Livestock-Associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 Isolated from Swine in the United States

T. Nicholson, D. Alt, D. Bayles, 2017, Genome Announcements.

Pipeline for amplifying and analyzing amplicons of the V1–V3 region of the 16S rRNA gene

T. Nicholson, S. Bearson, D. Alt, 2016, BMC Research Notes.

The Application and Performance of Single Nucleotide Polymorphism Markers for Population Genetic Analyses of Lepidoptera

H. Robertson, K. Wanner, R. Hellmich, 2011, Front. Gene..

Comparative virulence and antimicrobial resistance distribution of Streptococcus suis isolates obtained from the United States

T. Nicholson, D. Bayles, 2022, Frontiers in Microbiology.

Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism

D. Alt, T. Looft, D. Bayles, 2017, BMC Microbiology.

Complete Genome Sequence of a Type III Ovine Strain of Mycobacterium avium subsp. paratuberculosis

D. Bayles, J. Bannantine, F. Biet, 2021, Microbiology Resource Announcements.

Genome sequencing of ovine isolates of Mycobacterium avium subspecies paratuberculosis offers insights into host association

D. Schwartz, S. Sreevatsan, V. Kapur, 2012, BMC Genomics.

Genome Sequences of Mannheimia haemolytica Serotype A2 Isolates D171 and D35, Recovered from Bovine Pneumonia

D. Bayles, R. Briggs, F. Tatum, 2015, Genome Announcements.

Genome Sequences of Serotype A6 Mannheimia haemolytica Isolates D174 and D38 Recovered from Bovine Pneumonia

D. Bayles, R. Briggs, F. Tatum, 2015, Genome Announcements.

Genome Sequences of Mannheimia haemolytica Serotype A1 Strains D153 and D193 from Bovine Pneumonia

D. Bayles, R. Briggs, F. Tatum, 2013, Genome Announcements.

Disruption of rcsB by a duplicated sequence in a curli-producing Escherichia coli O157:H7 results in differential gene expression in relation to biofilm formation, stress responses and metabolism

D. Alt, T. Looft, D. Bayles, 2017, BMC Microbiology.

Draft Genome Sequences of Two Bison-Type and Two Sheep-Type Strains of Mycobacterium avium subsp. paratuberculosis

D. Bayles, J. Bannantine, 2021, Microbiology Resource Announcements.

Comparative genomics reveals structural and functional features specific to the genome of a foodborne Escherichia coli O157:H7

V. Sharma, D. Bayles, Suryatej Akavaram, 2019, BMC genomics.

The htrA (degP) Gene of Listeria monocytogenes 10403S Is Essential for Optimal Growth under Stress Conditions

D. Bayles, B. Wilkinson, L. Wonderling, 2004, Applied and Environmental Microbiology.

Draft Genome Sequences of Two Virulent Serotypes of Avian Pasteurella multocida

Samuel S. Hunter, T. Johnson, D. Bayles, 2013, Genome Announcements.

Porcine granulocyte-colony stimulating factor (G-CSF) delivered via replication-defective adenovirus induces a sustained increase in circulating peripheral blood neutrophils.

K. Lager, D. Bayles, S. Brockmeier, 2013, Biologicals : journal of the International Association of Biological Standardization.

Osmoprotectants and cryoprotectants for Listeria monocytogenes

D. Bayles, B. Wilkinson, D. O. Bayles, 2000, Letters in applied microbiology.

Isolation of Leptospira kirschneri serovar Grippotyphosa from a red panda (Ailurus fulgens) after antimicrobial therapy: Case report

J. Nally, D. Bayles, T. Stuber, 2023, Frontiers in Veterinary Science.

In-feed antibiotic effects on the swine intestinal microbiome

Robert D. Stedtfeld, Heather K. Allen, J. Tiedje, 2012, Proceedings of the National Academy of Sciences.

Analysis of Mycobacterium avium subsp. paratuberculosis Mutant Libraries Reveals Loci-dependent Transposition Biases and Strategies to Novel Mutant Discovery.

D. Zinniel, D. Bayles, J. Bannantine, 2016, Microbiology.

Analysis of Analysis of Mycobacterium avium Mycobacterium avium paratuberculosis paratuberculosis mutant libraries reveals loci-dependent transposition biases and mutant libraries reveals loci-dependent transposition biases and strategies for novel mutant discovery strategies for novel mutant discov

D. Zinniel, J. Stabel, D. Bayles, 2021 .

Transcriptomic differences noted in Glaesserella parasuis between growth in broth and on agar

D. Bayles, S. Brockmeier, Kathy T. Mou, 2019, PloS one.

Isolation and characterization of saprophytic and pathogenic strains of Leptospira from water sources in the Midwestern United States

J. Nally, D. Bayles, T. Stuber, 2024, Frontiers in Water.

Identification of equine mares as reservoir hosts for pathogenic species of Leptospira

J. Sahl, J. Nally, D. Bayles, 2024, Frontiers in veterinary science.