C. Davenport

发表

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

B. Tümmler, C. Davenport, Jens Neugebauer, 2012, PloS one.

Pseudomonas putida KT2440 genome update by cDNA sequencing and microarray transcriptomics.

R. Geffers, T. Pohl, J. Klockgether, 2011, Environmental microbiology.

Pseudomonas aeruginosa Genomic Structure and Diversity

Lutz Wiehlmann, Burkhard Tümmler, Colin F. Davenport, 2011, Front. Microbio..

Genome Diversity of Pseudomonas aeruginosa PAO1 Laboratory Strains

T. Pohl, J. Klockgether, F. Stanke, 2009, Journal of bacteriology.

The oxygenating constituent of 3,6-diketocamphane monooxygenase from the CAM plasmid of Pseudomonas putida: the first crystal structure of a type II Baeyer–Villiger monooxygenase

U. Bornscheuer, G. Bourenkov, J. Littlechild, 2015, Acta crystallographica. Section D, Biological crystallography.

Interclonal gradient of virulence in the Pseudomonas aeruginosa pangenome from disease and environment.

A. Goesmann, J. Klockgether, B. Tümmler, 2015, Environmental microbiology.

Abundant Oligonucleotides Common to Most Bacteria

B. Tümmler, C. Davenport, 2010, PLoS ONE.

The human respiratory tract microbial community structures in healthy and cystic fibrosis infants

B. Tümmler, C. Davenport, L. Wiehlmann, 2020, NPJ biofilms and microbiomes.

Intraclonal diversity of the Pseudomonas aeruginosa cystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence.

D. Schomburg, I. Brockhausen, J. Klockgether, 2013, Environmental microbiology.

Comparative genomics of green sulfur bacteria

D. Ussery, B. Tümmler, C. Davenport, 2010, Photosynthesis Research.

Visualization of Pseudomonas genomic structure by abundant 8-14mer oligonucleotides.

B. Tümmler, O. Reva, C. Davenport, 2009, Environmental microbiology.

Novel candidate genes for ECT response prediction—a pilot study analyzing the DNA methylome of depressed patients receiving electroconvulsive therapy

H. Frieling, S. Bleich, C. Davenport, 2020, Clinical Epigenetics.

The identification of pathogenic variants in BRCA1/2 negative, high risk, hereditary breast and/or ovarian cancer patients: High frequency of FANCM pathogenic variants

D. Steinemann, E. Schröck, T. Illig, 2019, International journal of cancer.

Computational Approaches for Metagenomic Datasets

B. Tümmler, C. Davenport, P. Chouvarine, 2015 .

MinION nanopore sequencing provides similar methylation estimates to Sanger bisulfite sequencing in the TRPA1 promoter region

F. Müller, H. Frieling, C. Davenport, 2021, bioRxiv.

Wochenende — modular and flexible alignment-based shotgun metagenome analysis

B. Rosenhahn, B. Tümmler, C. Davenport, 2022, bioRxiv.

Novel candidate genes for ECT response prediction—a pilot study analyzing the DNA methylome of depressed patients receiving electroconvulsive therapy

H. Frieling, S. Bleich, C. Davenport, 2020, Clinical Epigenetics.

Intraclonal genome diversity of Pseudomonas aeruginosa clones CHA and TB

J. Klockgether, B. Tümmler, C. Davenport, 2013, BMC Genomics.

Reversible Silencing of Cytomegalovirus Genomes by Type I Interferon Governs Virus Latency

R. Geffers, L. Dölken, H. Hauser, 2014, PLoS pathogens.

Reprogramming enriches for somatic cell clones with small scale mutations in cancer-associated genes

A. Schambach, A. Schwarzer, F. Adams, 2020, bioRxiv.

nf-core/rnaseq: nf-core/rnaseq v3.0 - Silver Shark

Philip A. Ewels, Paolo Di Tommaso, O. Botvinnik, 2020 .

Implementation of RNA sequencing and array CGH in the diagnostic workflow of the AIEOP-BFM ALL 2017 trial on acute lymphoblastic leukemia

D. Steinemann, M. Schrappe, A. Möricke, 2020, Annals of Hematology.

Reprogramming enriches for somatic cell clones with small scale mutations in cancer-associated genes.

A. Schambach, A. Schwarzer, F. Adams, 2021, Molecular therapy : the journal of the American Society of Gene Therapy.

The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

Anna Sergeevna Bosman, Oleg N. Reva, Hamilton Ganesan, 2008, BMC Bioinformatics.

Differential decay of parent-of-origin-specific genomic sharing in cystic fibrosis-affected sib pairs maps a paternally imprinted locus to 7q34

F. Stanke, B. Tümmler, C. Davenport, 2010, European Journal of Human Genetics.

Genome-Wide Methylation Mapping Using Nanopore Sequencing Technology Identifies Novel Tumor Suppressor Genes in Hepatocellular Carcinoma

C. Davenport, L. Wiehlmann, M. Dorda, 2021, International journal of molecular sciences.

Intraclonal genome diversity of the major Pseudomonas aeruginosa clones C and PA14

A. Goesmann, J. Klockgether, B. Tümmler, 2016, Environmental microbiology reports.

Analysis of myocardial cellular gene expression during pressure overload reveals matrix based functional intercellular communication

C. Dieterich, R. Geffers, M. Völkers, 2022, iScience.

Direct RNA Nanopore Sequencing of Pseudomonas aeruginosa Clone C Transcriptomes

B. Tümmler, C. Davenport, L. Wiehlmann, 2021, Journal of bacteriology.

Structural genome variants of Pseudomonas aeruginosa clone C and PA14 strains

J. Klockgether, B. Tümmler, J. Overmann, 2023, Frontiers in Microbiology.

Advances in computational analysis of metagenome sequences.

B. Tümmler, C. Davenport, 2013, Environmental microbiology.

152* Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs

J. Klockgether, B. Tümmler, C. Davenport, 2011, Journal of Cystic Fibrosis.

iPSC culture expansion selects against putatively actionable mutations in the mitochondrial genome

C. Davenport, L. Wiehlmann, G. Göhring, 2020, bioRxiv.

Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440.

U. Völker, J. Klockgether, B. Tümmler, 2011, FEMS microbiology letters.

The human respiratory tract microbial community structures in healthy and cystic fibrosis infants

B. Tümmler, C. Davenport, L. Wiehlmann, 2020, npj Biofilms and Microbiomes.

unknown to date to which extent this unequal segregation of heteroplasmies between cells arises from mosaicism in the parental cell population, selection on mutated mtDNA molecules on the cellular or organelle level, genetic drift during reduction of mtDNA during reprogramming

C. Davenport, L. Wiehlmann, I. Gruh, 2020 .

Longitudinal development of the airway metagenome of preterm very low birth weight infants during the first two years of life

B. Tümmler, D. Viemann, S. Pirr, 2023, ISME communications.

Functional characterization of the mouse Serpina1 paralog DOM-7

T. Cantz, K. Haase, F. Berger, 2018, Biological chemistry.

Functional genomics of the initial phase of cold adaptation of Pseudomonas putida KT2440.

U. Völker, J. Klockgether, B. Tümmler, 2011, FEMS microbiology letters.