C. Walsh

发表

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants

Aaron M. Walsh, W. Barton, P. Cotter, 2020, mSystems.

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project’s reference genome database

Paul D. Cotter, Colin Hill, R. P. Ross, 2015, BMC Microbiology.

Genotypic and Phenotypic Characterization of Fecal Staphylococcus epidermidis Isolates Suggests Plasticity to Adapt to Different Human Body Sites

P. Cotter, M. Mayer, A. Narbad, 2020, Frontiers in Microbiology.

Fermented food metagenomics reveals substrate-associated differences in taxonomy, health-associated- and antibiotic resistance-determinants

Aaron M. Walsh, W. Barton, P. Cotter, 2020 .

Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth

P. Cotter, F. Mcauliffe, C. Feehily, 2020, NPJ biofilms and microbiomes.

Identification of ADS024, a newly characterized strain of Bacillus velezensis with direct Clostridiodes difficile killing and toxin degradation bio-activities

R. P. Ross, C. Hill, B. Healy, 2022, Scientific reports.

A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome

P. Cotter, C. Walsh, C. Guinane, 2017, PeerJ.

Genomics of Foodborne Microorganisms

P. Cotter, C. Walsh, C. Guinane, 2019, Food Microbiology.

Effect of a bacteriocin-producing Streptococcus salivarius on the pathogen Fusobacterium nucleatum in a model of the human distal colon

P. Cotter, C. Walsh, P. O’Connor, 2022, Gut microbes.

First evidence of production of the lantibiotic nisin P

P. Cotter, M. Mayer, A. Narbad, 2019, Scientific Reports.

Investigation of the gut microbiome, bile acid composition and host immunoinflammatory response in a model of azoxymethane-induced colon cancer at discrete timepoints

S. Melgar, P. Cotter, C. Walsh, 2022, British Journal of Cancer.

Kefir ameliorates specific microbiota-gut-brain axis impairments in a mouse model relevant to autism spectrum disorder

Aaron M. Walsh, T. Dinan, J. Cryan, 2021, Brain, Behavior, and Immunity.

Nisin J, a Novel Natural Nisin Variant, Is Produced by Staphylococcus capitis Sourced from the Human Skin Microbiota

R. P. Ross, C. Hill, B. Healy, 2019, Journal of bacteriology.

Sequence analysis PSORTb v . 2 . 0 : Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis

Martin Ester, Matthew R. Laird, Fiona S. L. Brinkman, 2004 .

Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics

P. Cotter, F. Crispie, A. Álvarez‐Ordoñez, 2020, mSystems.

The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes

C. Hill, P. Cotter, C. Walsh, 2021, Gut microbes.

In Vitro and In Silico Based Approaches to Identify Potential Novel Bacteriocins from the Athlete Gut Microbiome of an Elite Athlete Cohort

P. Cotter, Ó. O’Sullivan, C. Walsh, 2022, Microorganisms.

Beneficial modulation of the gut microbiota

P. Cotter, P. O’Toole, C. Walsh, 2014, FEBS letters.

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome

E. Murphy, P. Cotter, Ó. O’Sullivan, 2020, Scientific Reports.

TITLE : Beneficial modulation of the gut microbiota 2 3

P. Cotter, P. O’Toole, C. Walsh, 2014 .

Nisin G is a novel nisin variant produced by a gut-derived Streptococcus salivarius

P. Cotter, C. Walsh, P. O’Connor, 2022, bioRxiv.

The two-component regulator WalKR provides an essential link between cell wall homeostasis with DNA replication in Staphylococcus aureus

C. McDevitt, C. Walsh, G. Carter, 2023, bioRxiv.

The probiotic L. casei LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome

E. Murphy, P. Cotter, P. O’Toole, 2020, Gut microbes.

170323 Reworked WalKR paper with figures

C. McDevitt, C. Walsh, G. Carter, 2023 .

Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

P. Cotter, F. Crispie, A. Álvarez‐Ordoñez, 2021, Microbiome.

First evidence of production of the lantibiotic nisin P

P. Cotter, M. Mayer, A. Narbad, 2020, Scientific Reports.

EFFECT ( S ) OF PHARMACOLOGIC INTERVENTION ON OXYGENATION , LUNG WATER AND PROTEIN LEAK IN THE THE PSEUDOMONAS ARDS PORCUIE MODEL OTIC FILE COPY

J., P. Carey, C. Walsh, 2022 .

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

P. Cotter, Ó. O’Sullivan, A. Walsh, 2021, Microorganisms.

An in silico analysis of bacteriocin production in the human microbiota and its relationship with health

C. Walsh, 2017 .

A high-throughput cytotoxicity screening platform reveals agr-independent mutations in bacteraemia-associated Staphylococcus aureus that promote intracellular persistence

C. Walsh, R. Massey, S. Giulieri, 2022, bioRxiv.

Detailed mapping of Bifidobacterium strain transmission from mother to infant via a dual culture-based and metagenomic approach

Rebecca L. Moore, P. Cotter, P. Rudd, 2023, Nature communications.

Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria

Anup D. Shah, V. Nizet, M. Wilkins, 2023, Nature Communications.

FANGORN: A quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

P. Cotter, D. van Sinderen, C. Walsh, 2022, bioRxiv.

Pervasive genotype-by-environment interactions shape the fitness effects of antibiotic resistance mutations

C. Walsh, B. Howden, M. Lagator, 2023, Proceedings of the Royal Society B.

Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial

Rebecca L. Moore, E. Murphy, P. Cotter, 2023, Frontiers in microbiology.

inhibitory of

Ó. O’Sullivan, C. Walsh, Harsh Mathur, 2019 .

inhibitory of

Ó. O’Sullivan, C. Walsh, Harsh Mathur, 2019 .

Profiling of vaginal Lactobacillus jensenii isolated from preterm and full-term pregnancies reveals strain-specific factors relating to host interaction

D. Sinderen, C. Feehily, C. Walsh, 2023, Microbial genomics.