Chin-Yi Chen

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The near-quantitative sampling of genomic DNA from various food-borne Eubacteria

A. Gehring, Yiping He, P. Irwin, 2014, BMC Microbiology.

Serogroup-level resolution of the “Super-7” Shiga toxin-producing Escherichia coli using nanopore single-molecule DNA sequencing

A. Gehring, G. Paoli, Chin-Yi Chen, 2018, Analytical and Bioanalytical Chemistry.

Bacterial cell recovery after hollow fiber microfiltration sample concentration: Most probable bacterial composition in frozen vegetables

Joseph A. Capobianco, A. Gehring, Yiping He, 2021 .

Application of Metagenomic Technologies for Antimicrobial Resistance and Food Safety Research and Beyond

Siyun Wang, Chin-Yi Chen, Xianghe Yan, 2015 .

Quorum Sensing and Production of Autoinducer-2 in Campylobacter spp., Escherichia coli O157:H7, and Salmonella enterica Serovar Typhimurium in Foods

Chin-Yi Chen, P. Fratamico, Chin-Yi Chen, 2002, Applied and Environmental Microbiology.

Variability in DNA Polymerase Eff iciency : Effects of Random Error , DNA Extraction Method and Isolate Type

Yiping He, P. Irwin, L. Nguyen, 2015 .

A method for correcting standard-based real-time PCR DNA quantitation when the standard’s polymerase reaction efficiency is significantly different from that of the unknown’s

P. Irwin, L. Nguyen, G. Paoli, 2012, Analytical and Bioanalytical Chemistry.

Rapid detection and quantification of aminoglycoside phosphorylation products using direct-infusion high-resolution and ultra-high-performance liquid chromatography/mass spectrometry.

Chin-Yi Chen, Johnny J Perez, 2018, Rapid communications in mass spectrometry : RCM.

Sequence analysis and plasmid mobilization of a 6.6-kb kanamycin resistance plasmid, pSNC3-Kan, from a Salmonella enterica serotype Newport isolate

T. Strobaugh, Chin-Yi Chen, Ly-Huong T Nguyen, 2022, PloS one.

Blocking nonspecific adsorption of native food-borne microorganisms by immunomagnetic beads with iota-carrageenan.

A. Gehring, P. Irwin, S. Tu, 2004, Carbohydrate research.

The protective roles of phosphorylated heat shock protein 27 in human cells harboring myoclonus epilepsy with ragged‐red fibers A8344G mtDNA mutation

Yau-Huei Wei, Chin-Yi Chen, Shi-Bei Wu, 2012, The FEBS journal.

Sequence of the Escherichia coli O121 O-Antigen Gene Cluster and Detection of Enterohemorrhagic E. coli O121 by PCR Amplification of the wzx and wzy Genes

P. Fratamico, Chin-Yi Chen, C. DebRoy, 2003, Journal of Clinical Microbiology.

Complete Genome Sequence of Campylobacter jejuni YH001 from Beef Liver, Which Contains a Novel Plasmid

Yiping He, P. Irwin, S. Reed, 2015, Genome Announcements.

DNA sequence of the Escherichia coli O103 O antigen gene cluster and detection of enterohemorrhagic E. coli O103 by PCR amplification of the wzx and wzy genes.

P. Fratamico, T. Strobaugh, Chin-Yi Chen, 2005, Canadian journal of microbiology.

Phenotypic and Genotypic Characterization of Biofilm Forming Capabilities in Non-O157 Shiga Toxin-Producing Escherichia coli Strains

G. Paoli, Chin-Yi Chen, Xianghe Yan, 2013, PloS one.

Exploring the anti-quorum sensing activity of a d-limonene nanoemulsion for Escherichia coli O157:H7.

J. Irudayaraj, Chin-Yi Chen, Yi Xu, 2018, Journal of biomedical materials research. Part A.

A 6 x 6 drop plate method for simultaneous colony counting and MPN enumeration of Campylobacter jejuni, Listeria monocytogenes, and Escherichia coli.

P. Irwin, Chin-Yi Chen, G. Nace, 2003, Journal of microbiological methods.

A cloning vector for creation of Escherichia coli lacZ translational fusions and generation of linear template for chromosomal integration.

Chin-Yi Chen, G. Uhlich, 2012, Plasmid.

Growth media and temperature effects on biofilm formation by serotype O157:H7 and non-O157 Shiga toxin-producing Escherichia coli.

Chin-Yi Chen, G. Uhlich, Ly-Huong T Nguyen, 2014, FEMS microbiology letters.

A 6×6 drop plate method for simultaneous colony counting and MPN enumeration of Campylobacter jejuni, Listeria monocytogenes, and Escherichia coli

P. Irwin, Chin-Yi Chen, G. Nace, 2003 .

Complete nucleotide sequences of 84.5- and 3.2-kb plasmids in the multi-antibiotic resistant Salmonella enterica serovar Typhimurium U302 strain G8430.

P. Fratamico, Chin-Yi Chen, B. Solow, 2007, Plasmid.

Impacts of Clarification Techniques on Sample Constituents and Pathogen Retention

Cheryl M. Armstrong, Joseph A. Capobianco, A. Gehring, 2019, Foods.

Quantitative analysis of viable, stressed and dead cells of Campylobacter jejuni strain 81-176.

Yiping He, Chin-Yi Chen, 2010, Food microbiology.

Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

J. Bono, P. Fratamico, Chin-Yi Chen, 2015, BMC Microbiology.

Decreased heat shock protein 27 expression and altered autophagy in human cells harboring A8344G mitochondrial DNA mutation.

Yau-Huei Wei, Chin-Yi Chen, M. Hsieh, 2011, Mitochondrion.

The complex multicellular morphology of the food spoilage bacteria Brochothrix thermosphacta strains isolated from ground chicken.

P. Irwin, G. Paoli, Chin-Yi Chen, 2020, Canadian journal of microbiology.

Phage insertion in mlrA and variations in rpoS limit curli expression and biofilm formation in Escherichia coli serotype O157: H7.

T. Strobaugh, E. Dudley, Chin-Yi Chen, 2013, Microbiology.

Characterization of the supervirulent virG gene of the Agrobacterium tumefaciens plasmid pTiBo542

S. C. Winans, Chin-Yi Chen, Lu Wang, 1991, Molecular and General Genetics MGG.

Analysis of AI-2/LuxS-dependent transcription in Campylobacter jejuni strain 81-176.

T. Strobaugh, J. Frye, Yiping He, 2008, Foodborne pathogens and disease.

Detection of Acetyltransferase Modification of Kanamycin, an Aminoglycoside Antibiotic, in Bacteria Using Ultra-High Performance Liquid Chromatography Tandem Mass Spectrometry.

Chin-Yi Chen, Johnny J Perez, 2018, Rapid communications in mass spectrometry : RCM.

The biofilm forming potential of bacterial species in the genus Campylobacter.

Chin-Yi Chen, N. Gunther, 2009, Food microbiology.

Genomic Comparison of Conjugative Plasmids from Salmonella enterica and Escherichia coli Encoding Beta-Lactamases and Capable of Mobilizing Kanamycin Resistance Col-like Plasmids

J. Frye, Poonam Sharma, Chin-Yi Chen, 2021, Microorganisms.

Binding of nontarget microorganisms from food washes to anti-Salmonella and anti-E. coli O157 immunomagnetic beads: most probable composition of background Eubacteria

P. Irwin, G. Paoli, Chin-Yi Chen, 2008, Analytical and bioanalytical chemistry.

Complete Genome Sequences of Two Strains of the Meat Spoilage Bacterium Brochothrix thermosphacta Isolated from Ground Chicken

P. Irwin, G. Paoli, Chin-Yi Chen, 2017, Genome Announcements.

Antimicrobial activity of spherical silver nanoparticles prepared using a biocompatible macromolecular capping agent: evidence for induction of a greatly prolonged bacterial lag phase

A. Gehring, Yiping He, P. Irwin, 2010, Journal of nanobiotechnology.

Evidence for a bimodal distribution of Escherichia coli doubling times below a threshold initial cell concentration

Chin-Yi Chen, P. Irwin, G. Paoli, 2010, BMC Microbiology.

The relationship between purely stochastic sampling error and the number of technical replicates used to estimate concentration at an extreme dilution

P. Irwin, Chin-Yi Chen, Ly-Huong T Nguyen, 2010, Analytical and bioanalytical chemistry.

Binding of nontarget microorganisms from food washes to anti-Salmonella and anti-E. coli O157 immunomagnetic beads: minimizing the errors of random sampling in extreme dilute systems

P. Irwin, Chin-Yi Chen, Ly-Huong T Nguyen, 2008, Analytical and bioanalytical chemistry.

Multiple mechanisms responsible for strong Congo-red-binding variants of Escherichia coli O157:H7 strains.

P. Irwin, Chin-Yi Chen, G. Uhlich, 2016, Pathogens and disease.

Single-chain Fv antibody with specificity for Listeria monocytogenes.

Chin-Yi Chen, G. Paoli, Chin-Yi Chen, 2004, Journal of immunological methods.

Whole-Genome Sequence of Escherichia coli Serotype O157:H7 Strain EDL932 (ATCC 43894)

Xinmin Zhang, G. Paoli, Chin-Yi Chen, 2016, Genome Announcements.

Whole-Genome Sequence of Escherichia coli Serotype O 157 : H 7 Strain EDL 932 ( ATCC 43894 )

Xinmin Zhang, G. Paoli, Chin-Yi Chen, 2016 .

Complete Genome Sequences of a Stress-Resistant Outbreak-Associated Shiga Toxin-Producing Escherichia coli O157:H7 Strain and a Variant with Enhanced Congo Red-Binding Capability

S. Kanrar, G. Paoli, Chin-Yi Chen, 2022, Microbiology resource announcements.

Stx1 prophage excision in Escherichia coli strain PA20 confers strong curli and biofilm formation by restoring native mlrA.

Chin-Yi Chen, Xianghe Yan, G. Uhlich, 2016, FEMS microbiology letters.

cyclic AMP receptor protein . regulatory interactions between sigma S and Salmonella typhimurium : complementary Identification of sigma S-regulated genes in

F. Fang, C. Y. Chen, Chin-Yi Chen, 1996 .

Editorial: Plasmid transfer-mechanisms, ecology, evolution and applications

C. Fuqua, E. Top, Chin-Yi Chen, 2022, Frontiers in Microbiology.

Genome sequencing and comparative genomics provides insights on the evolutionary dynamics and pathogenic potential of different H-serotypes of Shiga toxin-producing Escherichia coli O104

J. Bono, P. Fratamico, Chin-Yi Chen, 2015, BMC Microbiology.

Sequence analysis of a group of low molecular-weight plasmids carrying multiple IS903 elements flanking a kanamycin resistance aph gene in Salmonella enterica serovars.

T. Strobaugh, J. Frye, Chin-Yi Chen, 2011, Plasmid.

Implementation of normalized retention time (iRT) for bottom-up proteomic analysis of the aminoglycoside phosphotransferase enzyme facilitating method distribution

Chin-Yi Chen, Johnny J Perez, 2018, Analytical and Bioanalytical Chemistry.

Prevalence of ColE1-Like Plasmids and Kanamycin Resistance Genes in Salmonella enterica Serovars

T. Strobaugh, J. Frye, Chin-Yi Chen, 2010, Applied and Environmental Microbiology.

Central regulatory role for the RpoS sigma factor in expression of Salmonella dublin plasmid virulence genes

F. Fang, S. Libby, Chin-Yi Chen, 1995, Journal of bacteriology.

Characterization of small ColE1-like plasmids conferring kanamycin resistance in Salmonella enterica subsp. enterica serovars Typhimurium and Newport.

T. Strobaugh, J. Frye, Chin-Yi Chen, 2010, Plasmid.

Prevalence of ColE1-Like Plasmids and Kanamycin Resistance Genes in Salmonella enterica Serovars

T. Strobaugh, J. Frye, Chin-Yi Chen, 2010, Applied and Environmental Microbiology.

Isolation and characterization of two novel groups of kanamycin-resistance ColE1-like plasmids in Salmonella enterica serotypes from food animals

T. Strobaugh, Chin-Yi Chen, C. Jackson, 2018, PloS one.

Enhancing detection of Listeria monocytogenes in food products using an enzyme

Cheryl M. Armstrong, Joseph A. Capobianco, B. Berger, 2023, Food Control.

The protective roles of phosphorylated heat shock protein 27 in human cells harboring myoclonus epilepsy with ragged‐red fibers A8344G mtDNA mutation

Yau-Huei Wei, Chin-Yi Chen, Shi-Bei Wu, 2012, The FEBS Journal.

Peroxide resistance in Escherichia coli serotype O157 : H7 biofilms is regulated by both RpoS-dependent and -independent mechanisms.

J. Phillips, P. Irwin, Chin-Yi Chen, 2012, Microbiology.

Analysis of AI-2/LuxS-dependent transcription in Campylobacter jejuni strain 81-176.

T. Strobaugh, J. Frye, Yiping He, 2008, Foodborne pathogens and disease.

SlyA, a transcriptional regulator of Salmonella typhimurium, is required for resistance to oxidative stress and is expressed in the intracellular environment of macrophages

F. Fang, S. Libby, Chin-Yi Chen, 1997, Infection and immunity.

Genome amplification and promoter mutation expand the range of csgD-dependent biofilm responses in an STEC population.

P. Irwin, Chin-Yi Chen, G. Uhlich, 2017, Microbiology.

Phage insertion in mlrA and variations in rpoS limit curli expression and biofilm formation in Escherichia coli serotype O157: H7.

T. Strobaugh, E. Dudley, Chin-Yi Chen, 2013, Microbiology.