Shuang Ding

发表

Erratum: Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function (PLoS ONE (2015) 10:9 (e0137124) DOI:10.1371/journal.pone.0137124)

S. Broyde, L. Jia, S. Amin, 2015 .

Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function

S. Broyde, S. Amin, N. Geacintov, 2015, PloS one.

Nuclear Magnetic Resonance Studies of an N2-Guanine Adduct Derived from the Tumorigen Dibenzo[a,l]pyrene in DNA: Impact of Adduct Stereochemistry, Size, and Local DNA Sequence on Solution Conformations

S. Broyde, S. Amin, N. Geacintov, 2014, Biochemistry.

Nuclear magnetic resonance solution structure of an N(2)-guanine DNA adduct derived from the potent tumorigen dibenzo[a,l]pyrene: intercalation from the minor groove with ruptured Watson-Crick base pairing.

D. Jerina, S. Broyde, S. Amin, 2012, Biochemistry.

Conformational properties of equilenin-DNA adducts: stereoisomer and base effects.

S. Broyde, N. Geacintov, R. Shapiro, 2008, Chemical research in toxicology.

Determination of absolute configurations of 4-hydroxyequilenin-cytosine and -adenine adducts by optical rotatory dispersion, electronic circular dichroism, density functional theory calculations, and mass spectrometry.

S. Broyde, J. Bolton, R. V. van Breemen, 2008, Chemical research in toxicology.

4-hydroxyequilenin-adenine lesions in DNA duplexes: stereochemistry, damage site, and structure.

S. Broyde, N. Geacintov, R. Shapiro, 2007, Biochemistry.

Free energy profiles of base flipping in intercalative polycyclic aromatic hydrocarbon-damaged DNA duplexes: energetic and structural relationships to nucleotide excision repair susceptibility.

S. Broyde, Yingkai Zhang, Shenglong Wang, 2013, Chemical research in toxicology.

Adenine-DNA adducts derived from the highly tumorigenic Dibenzo[a,l]pyrene are resistant to nucleotide excision repair while guanine adducts are not.

S. Broyde, S. Amin, N. Geacintov, 2013, Chemical research in toxicology.

Microwave-assisted synthesis of fluorine substituted porphyrins and kinetics of formation of zinc porphyrin complexes in acetic acid

Shuang Ding, Yiqin Gao, J. Pan, 2015 .

Structural and Dynamic Characterization of Polymerase κ’s Minor Groove Lesion Processing Reveals How Adduct Topology Impacts Fidelity

S. Broyde, Yingkai Zhang, N. Geacintov, 2014, Biochemistry.

Absolute configurations of spiroiminodihydantoin and allantoin stereoisomers: comparison of computed and measured electronic circular dichroism spectra.

S. Broyde, L. Jia, N. Geacintov, 2009, Chemical research in toxicology.

Assignment of absolute configurations of the enantiomeric spiroiminodihydantoin nucleobases by experimental and computational optical rotatory dispersion methods.

S. Broyde, L. Jia, N. Geacintov, 2006, Chemical research in toxicology.

Ketonization of Propionic Acid to 3-Pentanone over CexZr1–xO2 Catalysts: The Importance of Acid–Base Balance

Xinli Zhu, Q. Ge, Jinyu Han, 2018, Industrial & Engineering Chemistry Research.

Base flipping free energy profiles for damaged and undamaged DNA.

S. Broyde, Yingkai Zhang, Shenglong Wang, 2010, Chemical research in toxicology.

Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro.

S. Broyde, B. Van Houten, J. Bolton, 2011, DNA repair.

Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion–base stacking interactions

D. Patel, S. Broyde, S. Amin, 2011, Nucleic acids research.

NMR and computational studies of stereoisomeric equine estrogen-derived DNA cytidine adducts in oligonucleotide duplexes: opposite orientations of diastereomeric forms.

D. Patel, S. Broyde, J. Bolton, 2009, Biochemistry.

Absolute configurations of DNA lesions determined by comparisons of experimental ECD and ORD spectra with DFT calculations.

S. Broyde, N. Geacintov, V. Shafirovich, 2009, Chirality.

Conversion of propionic acid and 3-pentanone to hydrocarbons on ZSM-5 catalysts: Reaction pathway and active site

Xinli Zhu, Q. Ge, Jinyu Han, 2017 .

The interaction of allicin with bovine serum albumin and its influence on the structure of protein

Shuang Ding, Shifang Jia, Liurong Huang, 2021, Process Biochemistry.

Structural basis for the recognition of diastereomeric 5′,8-cyclo-2′-deoxypurine lesions by the human nucleotide excision repair system

S. Broyde, N. Geacintov, V. Shafirovich, 2014, Nucleic acids research.

Intercalative conformations of the 14R (+)- and 14S (-)-trans-anti-DB[a,l]P-N⁶-dA adducts: molecular modeling and MD simulations.

S. Broyde, N. Geacintov, Yuqin Cai, 2011, Chemical research in toxicology.

Correction: Resistance to Nucleotide Excision Repair of Bulky Guanine Adducts Opposite Abasic Sites in DNA Duplexes and Relationships between Structure and Function

S. Broyde, L. Jia, S. Amin, 2015, PloS one.

A highly selective sensor of cysteine with tunable sensitivity and detection window based on dual-emission Ag nanoclusters.

Jingjing Zhu, Shuang Ding, Zhenming Li, 2014, Biosensors & bioelectronics.

A Novel SARS-CoV-2 Multitope Protein/Peptide Vaccine Candidate is Highly Immunogenic and Prevents Lung Infection in an AAV hACE2 Mouse Model and non-human primates

F. Guirakhoo, T. Monath, Yi-Ling Lin, 2020, bioRxiv.

Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[a]pyrene-derived lesion in UvrB.

S. Broyde, L. Jia, B. Van Houten, 2009, Biochemistry.

Structural, energetic and dynamic properties of guanine(C8)–thymine(N3) cross-links in DNA provide insights on susceptibility to nucleotide excision repair

S. Broyde, N. Geacintov, V. Shafirovich, 2011, Nucleic acids research.

Equilenin-derived DNA adducts to cytosine in DNA duplexes: structures and thermodynamics.

S. Broyde, N. Geacintov, R. Shapiro, 2005, Biochemistry.

Conformations of stereoisomeric base adducts to 4-hydroxyequilenin.

S. Broyde, N. Geacintov, R. Shapiro, 2003, Chemical research in toxicology.

Conformational analysis of a 4-hydroxyequilenin Guanine adduct using density functional theory.

S. Broyde, N. Geacintov, Shuang Ding, 2002, Chemical research in toxicology.

A bulky DNA lesion derived from a highly potent polycyclic aromatic tumorigen stabilizes nucleosome core particle structure.

S. Broyde, N. Geacintov, Adam G Schwaid, 2010, Biochemistry.

Condensation of Methyl Propionate with Formaldehyde to Methyl Methacrylate over Cs-Zr-Mg/SiO2 Catalysts

Lei Wang, Suojiang Zhang, Zengxi Li, 2011 .

Conversion of C2–4 Carboxylic Acids to Hydrocarbons on HZSM-5: Effect of Carbon Chain Length

Xinli Zhu, Q. Ge, Jinyu Han, 2019, Industrial & Engineering Chemistry Research.

D. Jerina, S. Broyde, S. Amin, 2012, Biochemistry.