C. Kaplan

发表

Structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in Nucleotide Excision Repair

Craig D. Kaplan, B. Garcia, K. Murakami, 2021, bioRxiv.

Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis

Craig D. Kaplan, D. Bushnell, R. Kornberg, 2006, Cell.

Dissection of Pol II Trigger Loop Function and Pol II Activity–Dependent Control of Start Site Selection In Vivo

Craig D. Kaplan, C. Kaplan, Huiyan Jin, 2012, PLoS genetics.

Evolution, biogenesis and function of promoter-associated RNAs

Craig D. Kaplan, J. Mattick, R. Taft, 2009, Cell cycle.

Helicase activity is only partially required for Schizosaccharomyces pombe Rqh1p function

Craig D. Kaplan, C. Kaplan, F. Ahmad, 2002, Yeast.

Interaction between Transcription Elongation Factors and mRNA 3′-End Formation at the Saccharomyces cerevisiae GAL10-GAL7 Locus*

Craig D. Kaplan, F. Winston, M. Holland, 2005, Journal of Biological Chemistry.

The Histone Chaperones FACT and Spt6 Restrict H2A.Z from Intragenic Locations.

Craig D. Kaplan, F. Robert, C. Peterson, 2015, Molecular cell.

Promoter scanning during transcription initiation in Saccharomyces cerevisiae: Pol II in the “shooting gallery”

Charles D. Johnson, Jordi Abante Llenas, Craig D. Kaplan, 2019, bioRxiv.

Regulatory oversight of the iron trade: posttranscriptional regulation in yeast.

Craig D. Kaplan, C. Kaplan, J. Kaplan, 2005, Cell metabolism.

Polyadenylation site choice in yeast is affected by competition between Npl3 and polyadenylation factor CFI.

C. Moore, S. Buratowski, C. Kaplan, 2007, RNA.

Competing for the clamp: promoting RNA polymerase processivity and managing the transition from initiation to elongation.

Craig D. Kaplan, C. Kaplan, G. Hartzog, 2011, Molecular cell.

Functional assays for transcription mechanisms in high-throughput.

Craig D. Kaplan, C. Kaplan, C. Qiu, 2019, Methods.

Divergent contributions of conserved active site residues to transcription by eukaryotic RNA polymerases I and II.

Craig D. Kaplan, A. Beyer, C. Kaplan, 2013, Cell reports.

Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms

Craig D. Kaplan, R. Kornberg, S. Block, 2014, Proceedings of the National Academy of Sciences.

No evidence that synonymous mutations in yeast genes are mostly deleterious

Christopher P. Mancuso, Tami D. Lieberman, G. Sherlock, 2022, bioRxiv.

Uncoupling Promoter Opening from Start-Site Scanning.

Craig D. Kaplan, R. Kornberg, Ralph E. Davis, 2015, Molecular cell.

Wide-ranging and unexpected consequences of altered Pol II catalytic activity in vivo

C. Kaplan, C. Qiu, Indranil Malik, 2017, bioRxiv.

Relationships Between RNA Polymerase II Activity and Spt Elongation Factors to Spt- Phenotype and Growth in Saccharomyces cerevisiae

Craig D. Kaplan, C. Kaplan, Huiyan Jin, 2016, G3: Genes, Genomes, Genetics.

Systematic mutagenesis of TFIIH subunit p52/Tfb2 identifies residues required for XPB/Ssl2 subunit function and genetic interactions with TFB6

Craig D. Kaplan, J. Ranish, Christopher C. Ebmeier, 2022, The Journal of biological chemistry.

Effects of Pol II catalytic mutants on in vivo elongation rate, processivity, gene expression, mRNA decay and response to nucleotide depletion

C. Kaplan, C. Qiu, Indranil Malik, 2016 .

Pairs of promoter pairs in a web of transcription

C. Kaplan, 2016, Nature Genetics.

Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning

Craig D. Kaplan, M. Feig, Bercem Dutagaci, 2022, bioRxiv.

High-resolution and high-accuracy topographic and transcriptional maps of the

Aidan I. Brown, C. Bustamante, Antony Lee, 2019 .

Relationships of RNA Polymerase II Genetic Interactors to Transcription Start Site Usage Defects and Growth in Saccharomyces cerevisiae

C. Kaplan, Huiyan Jin, 2014, G3: Genes, Genomes, Genetics.

High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

S. Sze, C. Kaplan, Huiyan Jin, 2016, bioRxiv.

The architecture of RNA polymerase fidelity

Craig D. Kaplan, C. Kaplan, 2010, BMC Biology.

Iron acquisition and transcriptional regulation.

Craig D. Kaplan, C. Kaplan, J. Kaplan, 2009, Chemical reviews.

Thiolutin is a direct inhibitor of RNA Polymerase II

Craig D. Kaplan, P. Arora, C. Kaplan, 2021 .

Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae

Craig D. Kaplan, M. Polymenis, C. Kaplan, 2018, G3: Genes, Genomes, Genetics.

Basic mechanisms of RNA polymerase II activity and alteration of gene expression in Saccharomyces cerevisiae.

Craig D. Kaplan, C. Kaplan, Craig D Kaplan, 2013, Biochimica et biophysica acta.

The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin.

Craig D. Kaplan, Roger D Kornberg, R. Kornberg, 2008, Molecular cell.

Activation and reactivation of the RNA polymerase II trigger loop for intrinsic RNA cleavage and catalysis

Craig D. Kaplan, C. Kaplan, Huiyan Jin, 2014, Transcription.

Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.

Craig D. Kaplan, A. Cohen, M. Trakselis, 2015, Molecular cell.

RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template

Hye Kyong Kweon, P. Andrews, D. Engelke, 2014, RNA.

Correction: High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

S. Sze, C. Kaplan, Huiyan Jin, 2018, PLoS genetics.

The mechanism of RNA 5′ capping with NAD+, NADH, and desphospho-CoA

Craig D. Kaplan, R. Ebright, I. Barvík, 2016, Nature.

Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II

Steven M. Block, Robert Landick, Roger D. Kornberg, 2012, Proceedings of the National Academy of Sciences.

A bridge to transcription by RNA polymerase

Craig D. Kaplan, R. Kornberg, C. Kaplan, 2008, Journal of biology.

RNA Polymerase II Trigger Loop Mobility

Craig D. Kaplan, C. Kaplan, D. O. Peterson, 2016, The Journal of Biological Chemistry.

Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae

William K. M. Lai, Craig D. Kaplan, B. Pugh, 2021, bioRxiv.

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Charles D. Johnson, Jordi Abante Llenas, William K. M. Lai, 2020, Genome Biology.

Organismal benefits of transcription speed control at gene boundaries

Craig D. Kaplan, A. Sandelin, Peter Kindgren, 2020, EMBO reports.

High-Resolution Phenotypic Landscape of the RNA Polymerase II Trigger Loop

Craig D. Kaplan, S. Sze, C. Kaplan, 2016, bioRxiv.

From Structure to Systems: High-Resolution, Quantitative Genetic Analysis of RNA Polymerase II

J. Benschop, F. Holstege, N. Krogan, 2013, Cell.

Ssl 2 / TFIIH function in Transcription Start Site Scanning by RNA Polymerase II in 1 Saccharomyces cerevisiae 2 3

William K. M. Lai, Craig D. Kaplan, B. Pugh, 2022 .

Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels

Craig D. Kaplan, S. Sze, Yunye Zhu, 2021, bioRxiv.

Cryo-EM structure of TFIIH/Rad4–Rad23–Rad33 in damaged DNA opening in nucleotide excision repair

Craig D. Kaplan, B. Garcia, K. Murakami, 2021, Nature Communications.

Germline mutation in POLR2A: a heterogeneous, multi-systemic developmental disorder characterized by transcriptional dysregulation

Michael M. Khayat, Michael F. Wangler, J. Rosenfeld, 2020, HGG advances.

A Dual Interface Determines the Recognition of RNA Polymerase II by RNA Capping Enzyme*

Craig D. Kaplan, Jianhua Fu, C. Lima, 2010, The Journal of Biological Chemistry.

Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler

Craig D. Kaplan, Sarah J. Hainer, C. Kaplan, 2020, BioEssays : news and reviews in molecular, cellular and developmental biology.

Transcription Elongation Factors Repress Transcription Initiation from Cryptic Sites

Craig D. Kaplan, F. Winston, C. Kaplan, 2003, Science.

Post-transcriptional Control of Cyclooxygenase-2 Gene Expression

Thomas M. McIntyre, Guy A. Zimmerman, Craig D. Kaplan, 2000, The Journal of Biological Chemistry.

Spt5 and spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster.

J. R. Morris, Craig D. Kaplan, F. Winston, 2000, Genes & development.

High-resolution and High-accuracy Topographic and Transcriptional 1 Maps of the Nucleosome Barrier 2 3

Aidan I. Brown, C. Bustamante, Antony Lee, 2022 .

Widespread epistasis shapes RNA Polymerase II active site function and evolution

S. Sze, C. Kaplan, C. Qiu, 2023, bioRxiv.

Thiolutin is a direct inhibitor of RNA Polymerase II

Craig D. Kaplan, P. Arora, C. Kaplan, 2021, bioRxiv.

Revealing the hidden relationship between nucleosomes and splicing

Craig D. Kaplan, C. Kaplan, 2009, Cell cycle.

A genome-wide copper-sensitized screen identifies novel regulators of mitochondrial cytochrome c oxidase activity

Craig D. Kaplan, C. Kaplan, Vishal M. Gohil, 2021, The Journal of biological chemistry.

A genome wide copper-sensitized screen identifies novel regulators of mitochondrial cytochrome c oxidase activity

Craig D. Kaplan, C. Kaplan, Vishal M. Gohil, 2021, bioRxiv.

Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation

R. Kornberg, S. Nagai, Ralph E. Davis, 2012, Proceedings of the National Academy of Sciences.

Evolutionary conservation of the fidelity of transcription

Craig D. Kaplan, W. Thomas, P. Hasselt, 2022, Nature Communications.

Widespread epistasis shapes RNA Polymerase II active site function and evolution

Craig D. Kaplan, S. Sze, C. Kaplan, 2023, bioRxiv.

Iron Acquisition and Transcriptional Regulation

Craig D. Kaplan, C. Kaplan, J. Kaplan, 2010 .

Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae determines contributions of DNA sequence and RNA Polymerase II activity

Craig D. Kaplan, Yunye Zhu, C. Kaplan, 2021 .

Insufficient evidence for non-neutrality of synonymous mutations

Tami D. Lieberman, G. Sherlock, L. Kruglyak, 2023, Nature.