A. Piantadosi

Hayden C. Metsky, Arjun Khanna, Matthew P Frosch, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

HIV-1 evolution in gag and env is highly correlated but exhibits different relationships with viral load and the immune response

J. Baeten, B. Chohan, J. Overbaugh, 2009, AIDS.

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

Douglas S Kwon, David K. Yang, Todd M. Allen, 2019, Nature Biotechnology.

Natural Aedes-Borne Virus Infection Detected in Male Adult Aedes aegypti (Diptera: Culicidae) Collected From Urban Settings in Mérida, Yucatán, México.

G. Vazquez-Prokopec, A. Piantadosi, Guadalupe Ayora Talavera, 2022, Journal of medical entomology.

Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection

Todd M. Allen, Pardis C Sabeti, S. Schaffner, 2018, Journal of Virology.

Chronic HIV-1 Infection Frequently Fails to Protect against Superinfection

Anne Piantadosi, Bhavna Chohan, R. McClelland, 2007, PLoS pathogens.

Diagnostic Approach for Arboviral Infections in the United States

S. Kanjilal, A. Piantadosi, 2020, Journal of Clinical Microbiology.

Jamestown Canyon virus in Massachusetts: clinical case series and vector screening

Pardis C Sabeti, Catherine M. Brown, D. McQuillen, 2020, Emerging microbes & infections.

Fatal Case of Chronic Jamestown Canyon Virus Encephalitis Diagnosed by Metagenomic Sequencing in Patient Receiving Rituximab

Pardis C Sabeti, Guixia Yu, J. E. Staples, 2020, Emerging infectious diseases.

Breadth of Neutralizing Antibody Response to Human Immunodeficiency Virus Type 1 Is Affected by Factors Early in Infection but Does Not Influence Disease Progression

J. Baeten, R. McClelland, C. Blish, 2009, Journal of Virology.

Heavily glycosylated, highly fit SIVMne variants continue to diversify and undergo selection after transmission to a new host and they elicit early antibody dependent cellular responses but delayed neutralizing antibody responses

J. Overbaugh, Xueling Wu, G. Landucci, 2008, Virology Journal.

Examination of a second region of the HIV type 1 genome reveals additional cases of superinfection.

B. Chohan, J. Overbaugh, A. Piantadosi, 2008, AIDS research and human retroviruses.

SARS-CoV-2 Episode 2? A sequel nobody wants to see

A. Piantadosi, 2021, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

The Importance and Challenges of Identifying SARS-CoV-2 Reinfections

M. Collins, J. Waggoner, A. Piantadosi, 2020, Journal of Clinical Microbiology.

Title : TREM 2 + and interstitial macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

R. Schinazi, R. Sékaly, M. Paiardini, 2021 .

A young adult with COVID-19 and multisystem inflammatory syndrome in children (MIS-C)-like illness: a case report

A. Piantadosi, Aaron D. Kofman, Joshua F. Detelich, 2020, BMC Infectious Diseases.

Intrathecal inflammatory responses in the absence of SARS-CoV-2 nucleic acid in the CSF of COVID-19 hospitalized patients

Melis N. Anahtar, Pardis C Sabeti, E. Rosenberg, 2021, Journal of the Neurological Sciences.

Infection- and vaccine-induced antibody binding and neutralization of the B.1.351 SARS-CoV-2 variant

J. Wrammert, R. Ahmed, N. Rouphael, 2021, Cell Host & Microbe.

Metagenomic Sequencing To Detect Respiratory Viruses in Persons under Investigation for COVID-19

J. Waggoner, A. Piantadosi, C. Kraft, 2020, Journal of Clinical Microbiology.

Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19

J. Waggoner, A. Piantadosi, C. Kraft, 2020, medRxiv.

SARS-CoV-2 Evolution and Immune Escape in Immunocompromised Patients

Daniel B. Weissman, Jay B. Varkey, K. Koelle, 2022, The New England journal of medicine.

SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 Antigen Self Tests

J. Waggoner, A. Piantadosi, L. Bassit, 2023, Journal of Clinical Virology.

Sensitivity of Rapid Antigen Tests Against SARS-CoV-2 Omicron and Delta Variants

E. Ortlund, H. Bowers, A. Greninger, 2023, medRxiv.

SARS-CoV-2 genotyping and sequencing following a simple and economical RNA extraction and storage protocol

J. Waggoner, A. Piantadosi, Sarah Hernandez, 2023, PloS one.

Analysis of the Percentage of Human Immunodeficiency Virus Type 1 Sequences That Are Hypermutated and Markers of Disease Progression in a Longitudinal Cohort, Including One Individual with a Partially Defective Vif

R. McClelland, B. Chohan, J. Overbaugh, 2009, Journal of Virology.

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

David K. Yang, Todd M. Allen, A. L. Tan, 2019, Nature Biotechnology.

Genomic Epidemiology of a Severe Acute Respiratory Syndrome Coronavirus 2 Outbreak in a US Major League Soccer Club: Was It Travel Related?

D. Hamer, M. Putukian, P. Kozarsky, 2023, Open Forum Infectious Diseases.

SARS-CoV-2 evolution and immune escape in immunocompromised patients treated with exogenous antibodies

D. Weissman, K. Koelle, Y. Xu, 2022, medRxiv.

Double-stranded RNA immunohistochemistry as a screening tool for viral encephalitis.

I. Solomon, A. Piantadosi, S. Alexandrescu, 2023, American journal of clinical pathology.

Single-Amplicon Multiplex Real-Time Reverse Transcription-PCR with Tiled Probes To Detect SARS-CoV-2 spike Mutations Associated with Variants of Concern

N. Schoof, R. Schinazi, J. Waggoner, 2021, Journal of clinical microbiology.

Single-amplicon, multiplex real-time RT-PCR with tiled probes to detect SARS-CoV-2 spike mutations associated with variants of concern

N. Schoof, R. Schinazi, A. Piantadosi, 2021 .

HIV-1 neutralizing antibody breadth is affected by factors early in infection, but does not influence disease progression. Journal of Virology 83(10):10269-74

J. Baeten, R. McClelland, C. Blish, 2009 .

Eastern Equine Encephalitis Virus Diversity in Massachusetts Patients, 1938–2020

I. Solomon, A. Piantadosi, S. Alexandrescu, 2023, The American journal of tropical medicine and hygiene.

Successful Use of Dupilumab for Recalcitrant Atopic Dermatitis in an HIV Patient.

A. Piantadosi, D. Marks, Jiade Yu, 2019, Dermatitis : contact, atopic, occupational, drug.

TREM2+ and interstitial-like macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

R. Schinazi, R. Sékaly, M. Paiardini, 2023, Nature Communications.

Outbreak of SARS-CoV-2 in hospitalized hemodialysis patients: an epidemiologic and genomic investigation.

J. Guarner, J. Waggoner, A. Piantadosi, 2021, Infection control and hospital epidemiology.

Which Trial Do We Need? Plasma Metagenomic Next-Generation Sequencing to Diagnose Infections in Patients with Hematological Malignancies and Febrile Neutropenia: Proposal for A Randomized-controlled Trial.

Steve Miller, A. Piantadosi, P. Simner, 2023, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

North American Powassan virus encompasses diverse in vitro phenotypes

Pardis C Sabeti, G. Ebel, A. Piantadosi, 2023, bioRxiv.

Subgenomic RNA Abundance Relative to Total Viral RNA Among Severe Acute Respiratory Syndrome Coronavirus 2 Variants

J. Waggoner, A. Piantadosi, E. Anderson, 2022, Open forum infectious diseases.

SARS-CoV-2 molecular testing and whole genome sequencing following RNA recovery from used BinaxNOW COVID-19 antigen self tests

J. Waggoner, A. Piantadosi, L. Bassit, 2023, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

Reduced binding and neutralization of infection- and vaccine-induced antibodies to the B.1.351 (South African) SARS-CoV-2 variant

J. Wrammert, R. Ahmed, N. Rouphael, 2021, bioRxiv.

TREM2⁺ and interstitial-like macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

M. Paiardini, Amit A. Upadhyay, S. Barratt-Boyes, 2022 .

Sensitivity of rapid antigen tests against SARS-CoV-2 Omicron and Delta variants

E. Ortlund, Adrianna L Westbrook, H. Bowers, 2023, Journal of Clinical Microbiology.

TREM2+ and interstitial-like macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

R. Schinazi, R. Sékaly, M. Paiardini, 2023, Nature Communications.

Breadth of Neutralizing Antibody Response to Human Immunodeficiency Virus Type 1 Is Affected by Factors Early in Infection but Does Not Influence Disease Progression

J. Baeten, C. Blish, J. Overbaugh, 2009, Journal of Virology.

Severe Acute Respiratory Syndrome Coronavirus 2 Evolution and Escape From Combination Monoclonal Antibody Treatment in a Person With HIV

Brian C. Zanoni, S. Ray, J. Waggoner, 2023, Open forum infectious diseases.