H. Aliee

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Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells

David S. Fischer, Malte D. Luecken, Daniel T. Montoro, 2020, bioRxiv.

Production , Manufacturing and Logistics A new time-independent reliability importance measure

Emanuele Borgonovo, Michael Glaß, Jürgen Teich, 2016 .

Uncertainty-Aware Compositional System-Level Reliability Analysis

Michael Glaß, Jürgen Teich, Hananeh Aliee, 2020, Dependable Embedded Systems.

Cellular drivers of injury response and regeneration in the adult zebrafish heart

Fabian J Theis, J. Junker, B. Spanjaard, 2021, bioRxiv.

Importance measures in time-dependent reliability analysis and system design

Emanuele Borgonovo, Michael Glaß, Jürgen Teich, 2015 .

Early transcriptional responses of bronchial epithelial cells to whole cigarette smoke mirror those of in-vivo exposed human bronchial mucosa

M. Nawijn, W. Timens, H. Aliee, 2022, Respiratory Research.

Origin and function of activated fibroblast states during zebrafish heart regeneration

D. Stainier, J. Junker, B. Spanjaard, 2022, Nature Genetics.

Determinants of expression of SARS‐CoV‐2 entry‐related genes in upper and lower airways

Fabian J Theis, B. Ponder, J. Vonk, 2021, Allergy.

Association of bronchial steroid inducible methylation quantitative trait loci with asthma and chronic obstructive pulmonary disease treatment response

Y. Sio, F. Chew, E. Burchard, 2022, Clinical and translational allergy.

Determinants of SARS-CoV-2 receptor gene expression in upper and lower airways

Fabian J Theis, B. Ponder, J. Vonk, 2020, medRxiv.

TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury

M. Kiebler, J. Schlegel, Saskia Hutten, 2022, Nature Neuroscience.

Efficient Treatment of Uncertainty in System Reliability Analysis using Importance Measures

Jürgen Teich, Faramarz Khosravi, Hananeh Aliee, 2019, 2019 49th Annual IEEE/IFIP International Conference on Dependable Systems and Networks (DSN).

System-level reliability analysis considering imperfect fault coverage

Jürgen Teich, Faramarz Khosravi, Hananeh Aliee, 2017, ESTIMedia.

Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development

R. Maehr, H. Aliee, Eric M. Kernfeld, 2022, Nature Communications.

Sfaira accelerates data and model reuse in single cell genomics

Luke Zappia, Fabian J. Theis, Hananeh Aliee, 2020, bioRxiv.

A sandbox for prediction and integration of DNA, RNA, and protein data in single cells

Fabian J Theis, Daniel B. Burkhardt, Malte D. Luecken, 2021 .

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Kyle J. Gaulton, David S. Fischer, Malte D. Luecken, 2021, Nature Medicine.

Sfaira accelerates data and model reuse in single cell genomics

David S. Fischer, Sophie Tritschler, L. Zappia, 2021, Genome Biology.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

David S. Fischer, Malte D. Luecken, Daniel T. Montoro, 2021, Nature Medicine.

AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution.

Hananeh Aliee, Fabian J Theis, H. Aliee, 2021, Cell systems.

AutoGeneS: Automatic gene selection using multi-objective optimization for RNA-seq deconvolution

Hananeh Aliee, Fabian J Theis, H. Aliee, 2020, bioRxiv.

Comparison of genome-wide gene expression profiling by RNA Sequencing versus microarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: does it provide new insights?

Fabian J Theis, M. Nawijn, V. Guryev, 2021, ERJ Open Research.

Integration of single-cell transcriptomes and chromatin landscapes reveals regulatory programs driving pharyngeal organ development

Fabian J Theis, R. Maehr, Jack Huey, 2022, Nature Communications.

Beyond Predictions in Neural ODEs: Identification and Interventions pdf

Fabian J. Theis, Hananeh Aliee, Fabian J Theis, 2021, ArXiv.

Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex

M. Götz, M. Dichgans, H. Aliee, 2023, bioRxiv.

Sparsity in Continuous-Depth Neural Networks

Niki Kilbertus, F. Theis, H. Aliee, 2022, NeurIPS.

Application-aware cross-layer reliability analysis and optimization

Norbert Wehn, Mehdi Baradaran Tahoori, Michael Glaß, 2015, it Inf. Technol..

Reliability Analysis and Optimization of Embedded Systems using Stochastic Logic and Importance Measures

Hananeh Aliee, H. Aliee, 2017 .

A Fast and Accurate Fault Tree Analysis Based on Stochastic Logic Implemented on Field-Programmable Gate Arrays

Hamid R. Zarandi, Hananeh Aliee, H. Aliee, 2013, IEEE Transactions on Reliability.

Fault tree analysis using stochastic logic: A reliable and high speed computing

Hananeh Aliee, Hamid R. Zarandi, H. Aliee, 2011, 2011 Proceedings - Annual Reliability and Maintainability Symposium.

Conditionally Invariant Representation Learning for Disentangling Cellular Heterogeneity

F. Theis, H. Aliee, Ferdinand Kapl, 2023, ArXiv.

Shared inflammatory glial cell signature after stab wound injury, revealed by spatial, temporal, and cell-type-specific profiling of the murine cerebral cortex

H. Aliee, J. Ninkovic, X. Bai, 2024, Nature communications.

A Fault-Tolerant, Dynamically Scheduled Pipeline Structure for Chip Multiprocessors

Hamid R. Zarandi, Hananeh Aliee, H. Aliee, 2011, SAFECOMP.

CPU-aware, process-level redundancy to tolerate faults in multi-core

Alireza Tajary, Hamid R. Zarandi, Hananeh Aliee, 2011, 2011 International Conference on High Performance Computing & Simulation.

An efficient, dynamically adaptive method to tolerate transient faults in multi-core systems

Hamid R. Zarandi, Hananeh Aliee, H. Aliee, 2011, EWDC '11.