R. Lasken

发表

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Trygve E Bakken, John W. Phillips, Danny N. Tran, 2019, bioRxiv.

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Trygve E Bakken, John W. Phillips, Danny N. Tran, 2019, Nature Communications.

Cell type discovery using single-cell transcriptomics: implications for ontological representation

Trygve E Bakken, Jeremy A. Miller, E. Lein, 2018, Human molecular genetics.

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

P. Pevzner, G. Smith, H. Chitsaz, 2011, Nature Biotechnology.

Mosaic Copy Number Variation in Human Neurons

Ira M. Hall, Michael R. Lindberg, F. Gage, 2013, Science.

RNA-sequencing from single nuclei

F. Gage, M. Araúzo-Bravo, J. Badger, 2013, Proceedings of the National Academy of Sciences.

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E Bakken, John W. Phillips, T. Nguyen, 2018, PloS one.

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

Ruben E. Valas, A. Halpern, S. Yooseph, 2011, The ISME Journal.

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton

S. Tringe, F. Chavez, M. Thiagarajan, 2010, Proceedings of the National Academy of Sciences.

Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.

F. Dean, J. Nelson, R. Lasken, 2001, Genome research.

Genomic sequencing of uncultured microorganisms from single cells

R. Lasken, 2012, Nature Reviews Microbiology.

Comprehensive human genome amplification using multiple displacement amplification

S. Kingsmore, M. Egholm, P. Bray-Ward, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Genomic DNA Amplification from a Single Bacterium

R. Lasken, M. Driscoll, Wanmin Song, 2005, Applied and Environmental Microbiology.

Specific single-cell isolation and genomic amplification of uncultured microorganisms

B. Ahring, P. Westermann, R. Lasken, 2007, Applied Microbiology and Biotechnology.

Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells

Timothy B. Stockwell, S. Quake, A. Halpern, 2007, PLoS genetics.

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

Richard H Scheuermann, László G Puskás, Song-Lin Ding, 2017, Nature Neuroscience.

Sequencing of isolated sperm cells for direct haplotyping of a human genome

Christian R Marshall, Roger S Lasken, Ewen F Kirkness, 2013, Genome research.

Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Pavel A Pevzner, Glenn Tesler, Sergey Nurk, 2013, Genome research.

Signal amplification by rolling circle amplification on DNA microarrays.

Varshal K. Davé, S. Kingsmore, B. Schweitzer, 2001, Nucleic acids research.

Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development

G. Wahl, C. Fan, C. Perou, 2018, Cell reports.

Single Virus Genomics: A New Tool for Virus Discovery

Lisa Zeigler Allen, Thomas Ishoey, Roger S. Lasken, 2011, PloS one.

The dnaB-dnaC replication protein complex of Escherichia coli. I. Formation and properties.

A. Kornberg, E. Wahle, R. Lasken, 1989, The Journal of biological chemistry.

The dnaB-dnaC replication protein complex of Escherichia coli. II. Role of the complex in mobilizing dnaB functions.

A. Kornberg, E. Wahle, R. Lasken, 1989, The Journal of biological chemistry.

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

Trygve E Bakken, Danny N. Tran, F. Steemers, 2017, bioRxiv.

Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa

D. Rusch, L. Brinkac, C. Dupont, 2013, Genome Announcements.

De novo assembly of bacterial genomes from single cells

P. Pevzner, G. Smith, H. Chitsaz, 2011, Nature biotechnology.

LASKEN – SINGLE CELL GENOME High throughput technology pipeline for microbial discovery: Single cell analysis of indoor and marine environments

J. Venter, R. Lasken, 2011 .

Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls

Alexandra R. Buckley, T. Ideker, N. Schork, 2016, BMC Genomics.

Single Cells within the Puerto Rico Trench Suggest Hadal Adaptation of Microbial Lineages

P. Pevzner, S. Nikolenko, S. Podell, 2015, Applied and Environmental Microbiology.

Single Cell Genome Amplification Accelerates Identification of the Apratoxin Biosynthetic Pathway from a Complex Microbial Assemblage

Pieter C. Dorrestein, Dumitru Brinza, Lena Gerwick, 2011, PloS one.

Single cell genomics of bacterial pathogens: outlook for infectious disease research

J. McLean, R. Lasken, 2014, Genome Medicine.

Multiple displacement amplification as an adjunct to PCR-based detection of Staphylococcus aureus in synovial fluid

G. Ehrlich, R. Lasken, P. Stoodley, 2010, BMC Research Notes.

Genotyping Across a 2320-SNP Linkage Panel Two Methods of Whole-Genome Amplification Enable Accurate

Vladimir Makarov, M. Latterich, A. Oliphant, 2004 .

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Jonathan Y. Hsu, Sarah L Parylak, F. Gage, 2016, Nature Communications.

Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel.

Vladimir Makarov, Roger S Lasken, Irina Sleptsova, 2004, Genome research.

Unbiased whole-genome amplification directly from clinical samples.

Roger S Lasken, Xiaohong Wu, S. Kingsmore, 2003, Genome Research.

Whole genome amplification: abundant supplies of DNA from precious samples or clinical specimens.

Roger S Lasken, M. Egholm, R. Lasken, 2003, Trends in biotechnology.

Going Deeper: Metagenome of a Hadopelagic Microbial Community

S. Yooseph, E. Allen, D. Fadrosh, 2011, PloS one.

The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1)

S. Podell, D. Bartlett, M. Novotny, 2017, Environmental microbiology.

High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification

Roger S Lasken, Osama Alsmadi, Stephen Kingsmore, 2001, BMC Genomics.

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

Dmitry Antipov, Alla Lapidus, Andrey D. Prjibelski, 2013, J. Comput. Biol..

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads

Dmitry Antipov, Alla Lapidus, Pavel A. Pevzner, 2013, RECOMB.

Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons

Sara B. Linker, Richard H Scheuermann, Rebecca Hodge, 2016, Nature Protocols.

Sequence specific detection of DNA using nicking endonuclease signal amplification (NESA)

Kendra Cox, Roger S. Lasken, Mark Danielsen, 2007, Nucleic acids research.

L1-associated genomic regions are deleted in somatic cells of the healthy human brain

F. Gage, A. Muotri, A. Paquola, 2016, Nature Neuroscience.

Cell type discovery and representation in the era of high-content single cell phenotyping

Brian D. Aevermann, Alexandra J. Lee, Richard H. Scheuermann, 2017, BMC Bioinformatics.

A Niche-Dependent Myeloid Transcriptome Signature Defines Dormant Myeloma Cells.

I. Amit, K. Vandyke, D. Hose, 2019, Blood.

Equivalent high-resolution identification of neuronal cell types with single-nucleus and single-cell RNA-sequencing

Richard H. Scheuermann, Hongkui Zeng, Nicholas J. Schork, 2017, bioRxiv.

A full-coverage, high-resolution human chromosome 22 genomic microarray for clinical and research applications.

D. Pinkel, D. Albertson, I. Dunham, 2002, Human molecular genetics.

Use of a Novel Embryonic Mammary Stem Cell Gene Signature to Improve Human Breast Cancer Diagnostics and Therapeutic Decision Making

G. Wahl, C. Perou, B. Spike, 2013 .

Comparative Genomic Analysis of Phylogenetically Closely Related Hydrogenobaculum sp. Isolates from Yellowstone National Park

T. Woyke, K. Mavromatis, E. Shock, 2013, Applied and Environmental Microbiology.

The primosomal protein n' of Escherichia coli is a DNA helicase.

A. Kornberg, R. Lasken, 1988, The Journal of biological chemistry.

Archaebacterial DNA Polymerases Tightly Bind Uracil-containing DNA*

R. Lasken, D. Schuster, Ayoub Rashtchian, 1996, The Journal of Biological Chemistry.

Simultaneous deletion of the methylcytosine oxidases Tet1 and Tet3 increases transcriptome variability in early embryogenesis

William A. Pastor, M. Surani, A. Rao, 2015, Proceedings of the National Academy of Sciences.

genomics platform a biofilm in a hospital sink using a high-throughput single-cell recovered from Porphyromonas gingivalis Genome of the pathogen Material

Valery M. Lesin, P. Pevzner, J. Venter, 2013 .

Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula

J. Yates, P. Dorrestein, R. Reinhardt, 2011, Proceedings of the National Academy of Sciences.

Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology

J. Neufeld, R. Lasken, Erik K Binga, 2008, The ISME Journal.

Single-cell sequencing in its prime

R. Lasken, 2013, Nature Biotechnology.

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

Roger S Lasken, T. Stockwell, R. Lasken, 2007 .

Genomic DNA amplification by the multiple displacement amplification (MDA) method.

Roger S Lasken, R. Lasken, 2009, Biochemical Society transactions.

Single-cell genomic sequencing using Multiple Displacement Amplification.

Roger S Lasken, R. Lasken, 2007, Current opinion in microbiology.

Insights into the Genome of Large Sulfur Bacteria Revealed by Analysis of Single Filaments

Garth D Ehrlich, Frank Oliver Glöckner, Marcel Huntemann, 2007, PLoS biology.

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

D. Fouts, B. Methé, J. McCorrison, 2014, BMC Bioinformatics.

Genomic sequencing of single microbial cells from environmental samples.

Tanja Woyke, Thomas Ishoey, Ramunas Stepanauskas, 2008, Current opinion in microbiology.

Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology

Gene W. Yeo, Baptiste N. Jaeger, Jennifer A. Erwin, 2016, Molecular Psychiatry.

High accuracy genotyping directly from genomic DNA using a rolling circle amplification based assay

M. Egholm, J. Brockman, P. Abarzúa, 2003, BMC Genomics.

Recent advances in genomic DNA sequencing of microbial species from single cells

Roger S. Lasken, Jeffrey S. McLean, J. McLean, 2014, Nature Reviews Genetics.

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

Hamidreza Chitsaz, Shibu Yooseph, Pavel A Pevzner, 2013, Proceedings of the National Academy of Sciences.

The biochemical basis of 5-bromouracil- and 2-aminopurine-induced mutagenesis.

R. Lasken, M. Goodman, D. Mhaskar, 1985, Basic life sciences.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome

Cliff Han, C. Lo, P. Chain, 2013, Genome research.

The green monster process for the generation of yeast strains carrying multiple gene deletions.

Yo Suzuki, Nozomu Yachie, M. Novotny, 2012, Journal of visualized experiments : JoVE.

Crystal structure of an archaebacterial DNA polymerase.

J. Kuriyan, D. Jeruzalmi, I. Moarefi, 1999, Structure.

The biochemical basis of 5-bromouracil-induced mutagenesis. Heteroduplex base mispairs involving bromouracil in G x C----A x T and A x T----G x C mutational pathways.

R. Lasken, M. Goodman, 1984, The Journal of biological chemistry.

A Whole Blood Molecular Signature for Acute Myocardial Infarction

E. Topol, T. Jatkoe, A. Torkamani, 2016, bioRxiv.

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Sara B. Linker, Fred H. Gage, Conor Fitzpatrick, 2016, Nature Communications.

NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly

Derrick E. Fouts, Roger S. Lasken, Jamison M. McCorrison, 2014, BMC Bioinformatics.

Multiple displacement amplification from single bacterial cells

Roger S. Lasken, B. Ahring, P. Westermann, 2005 .

A fidelity assay using "dideoxy" DNA sequencing: a measurement of sequence dependence and frequency of forming 5-bromouracil X guanine base mispairs.

R. Lasken, M. Goodman, 1985, Proceedings of the National Academy of Sciences of the United States of America.

A niche

I. Amit, K. Vandyke, D. Hose, 2004 .

Going Deeper: Metagenome of a Hadopelagic Microbial Community

S. Yooseph, F. Rodríguez-Valera, E. Allen, 2011, PloS one.

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

T. Stockwell, R. Lasken, 2007 .

High accuracy genotyping directly from genomic DNA using a rolling circle amplification based assay

Joel P. Brockman, M. Egholm, P. Abarzúa, 2003, BMC genomics.

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Jonathan Y. Hsu, Baptiste N. Jaeger, Sarah L Parylak, 2017, Nature Communications.

Big data and single cell transcriptomics: implications for ontological representation

Alexander D. Diehl, Brian D. Aevermann, Richard H. Scheuermann, 2018, bioRxiv.

Production of a Preliminary Quality Control Pipeline for Single Nuclei RNA-Seq and Its Application in the Analysis of Cell Type Diversity of Post-Mortem Human Brain Neocortex

Fan Zhang, Brian D. Aevermann, Richard H. Scheuermann, 2017, PSB.

Mechanism of chimera formation during the Multiple Displacement Amplification reaction

T. Stockwell, R. Lasken, 2007 .

Isolation and genome analysis of single virions using 'single virus genomics'.

S. Williamson, J. McLean, M. Novotny, 2013, Journal of visualized experiments : JoVE.

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

P. Pevzner, G. Tesler, R. Stepanauskas, 2013, J. Comput. Biol..

Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum

P. Pevzner, J. Venter, H. Chitsaz, 2013, Proceedings of the National Academy of Sciences.

Single-cell sequencing in its prime

R. Lasken, 2013, Nature Biotechnology.

A Whole Blood Molecular Signature for Acute Myocardial Infarction

E. Topol, T. Jatkoe, A. Torkamani, 2016, Scientific Reports.

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

Sara B. Linker, Conor Fitzpatrick, Jonathan Y Hsu, 2016, Nature Communications.