Jiangning Song

发表

OP-CBIO190728 1..9

Geoffrey I. Webb, T. Akutsu, A. Leier, 2019 .

Production of octenyl succinic anhydride-modified waxy corn starch and its characterization.

Liqun Jin, Zhi-Qiang Liu, Yuguo Zheng, 2008, Journal of agricultural and food chemistry.

Cell graph neural networks enable the precise prediction of patient survival in gastric cancer

Yu Guang Wang, Guido Montúfar, N. Otter, 2022, npj Precision Oncology.

Resolvins E1 and D1 inhibit interstitial fibrosis in the obstructed kidney via inhibition of local fibroblast proliferation

Jiangning Song, Jun Yao, D. Nikolic-Paterson, 2012, The Journal of pathology.

Corrigendum: Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity [Briefings in Bioinformatics, (2017)] doi: 10.1093/bib/bbx018

Liubin Feng, Geoffrey I. Webb, Lukasz Kurgan, 2017 .

RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins

ZongYuan Ge, Fuyi Li, Jiangning Song, 2022, Briefings Bioinform..

PROST: AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations

T. Akutsu, Dong-Jun Yu, R. Gasser, 2022, J. Chem. Inf. Model..

Improving the prediction of DNA-protein binding by integrating multi-scale dense convolutional network with fault-tolerant coding.

Shang Gao, Dong-Jun Yu, Jiangning Song, 2022, Analytical biochemistry.

csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames

Chen Li, Xiaofeng Song, Jiangning Song, 2022, Briefings Bioinform..

DeepAIR: A deep learning framework for effective integration of sequence and 3D structure to enable adaptive immune receptor analysis

Chen Li, J. Rossjohn, Jiangning Song, 2022, bioRxiv.

PreAcrs: a machine learning framework for identifying anti-CRISPR proteins

Fuyi Li, Jiangning Song, Xiao-Yong Wang, 2022, BMC Bioinformatics.

Coassembled Nitric Oxide-Releasing Nanoparticles with Potent Antimicrobial Efficacy against Methicillin-Resistant Staphylococcus aureus (MRSA) Strains.

Jiangning Song, Lizhong He, Hsin-Hui Shen, 2022, ACS applied materials & interfaces.

A phytantriol-based cubosome formulation as an antimicrobial against lipopolysaccharide-deficient Gram-negative bacteria.

Chun-Ming Wu, Jian Li, Meiling Han, 2020, ACS applied materials & interfaces.

Ubiquitination pathway model for the barber's pole worm -Haemonchus contortus.

N. Young, A. Hofmann, R. Gasser, 2022, International journal for parasitology.

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants

Maha A. Thafar, Chen Li, Dong-Jun Yu, 2022, Briefings Bioinform..

Performing protein fold recognition by exploiting a stack convolutional neural network with the attention mechanism.

Dong-Jun Yu, Jiangning Song, Ke Han, 2022, Analytical biochemistry.

Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification

S. Imoto, R. Bassed, Jiangning Song, 2022, ArXiv.

COPPER: an ensemble deep-learning approach for identifying exclusive virus-derived small interfering RNAs in plants.

Cangzhi Jia, Fuyi Li, Jiangning Song, 2022, Briefings in functional genomics.

Targeted Delivery of LM22A-4 by Cubosomes Protects Retinal Ganglion Cells in An Experimental Glaucoma Model.

B. Bui, A. Duff, Guei-Sheung Liu, 2021, Acta biomaterialia.

MutTMPredictor: Robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins

Dong-Jun Yu, Jiangning Song, Yi-Heng Zhu, 2021, Computational and structural biotechnology journal.

Positive-unlabeled learning in bioinformatics and computational biology: a brief review

Shirui Pan, L. Coin, A. Leier, 2021, Briefings Bioinform..

PhosTransfer: A Deep Transfer Learning Framework for Kinase-Specific Phosphorylation Site Prediction in Hierarchy

James C. Whisstock, Campbell Wilson, Tatiana T. Marquez-Lago, 2020, PAKDD.

PScL-HDeep: image-based prediction of protein subcellular location in human tissue using ensemble learning of handcrafted and deep learned features with two-layer feature selection.

Jian Xu, Dong-Jun Yu, Jiangning Song, 2021, Briefings in bioinformatics.

Personalized On-Device E-Health Analytics With Decentralized Block Coordinate Descent

Quoc Viet Hung Nguyen, Tong Chen, Guanhua Ye, 2021, IEEE Journal of Biomedical and Health Informatics.

PROSPECT: A web server for predicting protein histidine phosphorylation sites

Geoffrey I. Webb, Fuyi Li, Halima Bensmail, 2020, J. Bioinform. Comput. Biol..

Feature Erasing and Diffusion Network for Occluded Person Re-Identification

Feng Zhu, Rui Zhao, Lihuo He, 2021, 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).

Temperature-mortality association during and before the COVID-19 pandemic in Italy: A nationwide time-stratified case-crossover study

Yuming Guo, Shanshan Li, Jiangning Song, 2021, Urban Climate.

ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning

T. Akutsu, Zhen Chen, Fuyi Li, 2023, Briefings Bioinform..

Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites

Dong-Jun Yu, Jiangning Song, Yan Liu, 2021, Briefings Bioinform..

Deep Ensemble Machine Learning Framework for the Estimation of PM2.5 Concentrations

Yuming Guo, Shanshan Li, Jiangning Song, 2022, Environmental health perspectives.

Preterm birth and term low birth weight associated with wildfire-specific PM2.5: A cohort study in New South Wales, Australia during 2016-2019.

Shanshan Li, Gongbo Chen, Jiangning Song, 2023, Environment international.

Global estimates of daily ambient fine particulate matter concentrations and unequal spatiotemporal distribution of population exposure: a machine learning modelling study.

Shanshan Li, Yadong Lei, Jiangning Song, 2023, The Lancet. Planetary health.

Porpoise: a new approach for accurate prediction of RNA pseudouridine sites.

L. Coin, Fuyi Li, Jinxiang Chen, 2021, Briefings in bioinformatics.

PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships

T. Akutsu, S. Imoto, A. Purcell, 2023, Bioinformatics.

ATTIC is an integrated approach for predicting A-to-I RNA editing sites in three species

L. Coin, Fuyi Li, Jiangning Song, 2023, Briefings Bioinform..

DEMoS: a deep learning-based ensemble approach for predicting the molecular subtypes of gastric adenocarcinomas from histopathological images

R. Daly, T. Kwok, R. Gasser, 2022, Bioinform..

BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing Data

A. Leier, T. Marquez-Lago, Fuyi Li, 2022, Frontiers in Big Data.

Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification

S. Imoto, R. Daly, R. Bassed, 2023, Bioinform..

Multi-channel deep convolutional neural networks for multi-classifying thyroid disease

Feng Liu, V. Lee, Jia Rong, 2022, ArXiv.

Enhancing Characteristic Gene Selection and Tumor Classification by the Robust Laplacian Supervised Discriminative Sparse PCA

Dong-Jun Yu, Jiangning Song, Jian Xu, 2022, J. Chem. Inf. Model..

PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble method

Dong-Jun Yu, Jiangning Song, Matee Ullah, 2022, Bioinformatics.

iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities

T. Akutsu, S. Imoto, C. Landersdorfer, 2023, Briefings Bioinform..

MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network

Jian Xu, Dong-Jun Yu, Jiangning Song, 2021, Briefings Bioinform..

DeepGenGrep: a general deep learning-based predictor for multiple genomic signals and regions

L. Coin, Fuyi Li, Quanzhong Liu, 2022, Bioinform..

Digerati - A multipath parallel hybrid deep learning framework for the identification of mycobacterial PE/PPE proteins

L. Coin, R. Gasser, Fuyi Li, 2023, Comput. Biol. Medicine.

Clarion is a multi-label problem transformation method for identifying mRNA subcellular localizations

Cangzhi Jia, Fuyi Li, Jiangning Song, 2022, Briefings Bioinform..

MSNet-4mC: learning effective multi-scale representations for identifying DNA N4-methylcytosine sites

T. Akutsu, H. Ogata, Jiangning Song, 2022, Bioinform..

Smad7 in the hippocampus contributes to memory impairment in aged mice after anesthesia and surgery

Changliang Liu, Jiangning Song, Shixin Ye-Lehmann, 2023, Journal of Neuroinflammation.

A Regional Multiple Instance Learning Network for Whole Slide Image Segmentation

Hongmin Cai, Wenxiong Liao, Jiangning Song, 2022, 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level

Dong-Jun Yu, R. Gasser, Jiangning Song, 2023, Briefings Bioinform..

Improving protein fold recognition using triplet network and ensemble deep learning

Y. Liu, Dong-Jun Yu, Jiangning Song, 2021, Briefings Bioinform..

Deep Domain Adversarial Neural Network for the Deconvolution of Cell Type Mixtures in Tissue Proteome Profiling

R. Aebersold, R. Gasser, Guohua Wang, 2023, bioRxiv.

Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data

T. Shibuya, Jiangning Song, Yu-Shi Tian, 2023, BMC Bioinformatics.

DiCleave: a deep learning model for predicting human Dicer cleavage sites

Jiangning Song, Tomoya Mori, Lixuan Mu, 2024, BMC Bioinform..

Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images

Shanshan Li, S. Imoto, R. Daly, 2023, Comput. Methods Programs Biomed..

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning

Shanshan Li, Hui Liu, Lin Zhang, 2023, Bioinform..

Association between air pollution and telomere length: A study of 471,808 UK Biobank participants

Shanshan Li, D. Gasevic, Jiangning Song, 2023, The Innovation Medicine.