Bryan R Helm

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Travis S. Johnson, Jie Zhang, Kun Huang, 2019, Genome Biology.

Gene Co-Expression Networks Restructured Gene Fusion in Rhabdomyosarcoma Cancers

Kun Huang, Jie Zhang, Zhi Han, 2019, Genes.

Integration of Mouse and Human Single-cell RNA Sequencing Infers Spatial Cell-type Composition in Human Brains

Raghu Machiraju, Kun Huang, Travis S. Johnson, 2019, bioRxiv.

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing

Travis S. Johnson, Zachary B. Abrams, R. Machiraju, 2020, Scientific Reports.

Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations

Maher Rizkalla, Zhi Huang, Kun Huang, 2020, BMC Medical Genomics.

BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Travis S. Johnson, Kun Huang, J. Zhang, 2019, Genome Biology.

SALMON: Survival Analysis Learning With Multi-Omics Neural Networks on Breast Cancer

Maher Rizkalla, Jie Zhang, Zhi Huang, 2019, Front. Genet..

Correlation Analysis of Histopathology and Proteogenomics Data for Breast Cancer*

Kun Huang, Zhi Han, Jie Zhang, 2019, Molecular & Cellular Proteomics.