Erin Bush

发表

Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease

P. Sims, D. Farber, P. Szabo, 2019, Nature Communications.

De novo gene signature identification from single‐cell RNA‐seq with hierarchical Poisson factorization

Francisco J. R. Ruiz, D. Blei, A. Iavarone, 2018, bioRxiv.

Generation and persistence of human tissue-resident memory T cells in lung transplantation

C. Marboe, P. Sims, M. Sykes, 2019, Science Immunology.

De novo Gene Signature Identification from Single-Cell RNA-Seq with Hierarchical Poisson Factorization

David M. Blei, Francisco J. R. Ruiz, Peter Canoll, 2018, bioRxiv.

Single-cell transcriptome analysis of lineage diversity in high-grade glioma

Michele Ceccarelli, Peter Canoll, Antonio Iavarone, 2018, Genome Medicine.

Single-Cell Transcriptional Profiling of the Intestinal Epithelium.

P. Sims, Kelley S. Yan, Erin Bush, 2020, Methods in molecular biology.

Harnessing Hematopoietic Stem Cell Low Intracellular Calcium Improves Their Maintenance In Vitro.

H. Snoeck, M. Sykes, Erin Bush, 2019, Cell stem cell.

A single-cell reference map for human blood and tissue T cell activation reveals functional states in health and disease

P. Sims, D. Farber, P. Szabo, 2019, bioRxiv.

Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human

Mingyao Li, M. Reilly, A. Califano, 2020, Circulation.

Single-cell transcriptome analysis of lineage diversity in high-grade glioma

M. Ceccarelli, A. Iavarone, P. Canoll, 2018, Genome Medicine.

Re-convolving the compositional landscape of primary and recurrent glioblastoma reveals prognostic and targetable tissue states

Brett E. Youngerman, V. Menon, G. Mckhann, 2021, bioRxiv.

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens

A. Califano, P. Sims, M. Alvarez, 2017, Nature Communications.

Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature

D. Gutmann, P. Sims, J. Toonen, 2017, Oncotarget.

PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens

Andrea Califano, Mariano J. Alvarez, Ronald Realubit, 2017, Nature Communications.

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma

Ami Radunskaya, David H Gutmann, Peter A Sims, 2018, PloS one.

Single-Cell Transcriptome Analysis of Lineage Diversity and Microenvironment in High-Grade Glioma

M. Ceccarelli, A. Iavarone, P. Canoll, 2018, bioRxiv.

Whole tumor RNA-sequencing and deconvolution reveal a clinically-prognostic PTEN/PI3K-regulated glioma transcriptional signature.

D. Gutmann, P. Sims, J. Toonen, 2017, Oncotarget.

Human memory T cells with a naïve phenotype accumulate with aging and respond to persistent viruses

Marion C Lanteri, M. Diamond, P. Sims, 2016, Nature Immunology.

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose

Yufeng Shen, P. Sims, D. Backenroth, 2019, BMC Molecular and Cell Biology.

Single cell RNA-Seq reveals pre-cDCs fate determined by transcription factor combinatorial dose

Yufeng Shen, P. Sims, D. Backenroth, 2019, BMC Molecular and Cell Biology.

Gluten induces rapid reprogramming of natural memory αβ and γδ intraepithelial T cells to induce cytotoxicity in celiac disease

Suzanne K. Lewis, G. Bhagat, S. Krishnareddy, 2023, Science Immunology.

De novo gene signature identification from single‐cell RNA‐seq with hierarchical Poisson factorization

Francisco J. R. Ruiz, D. Blei, A. Iavarone, 2018, bioRxiv.