D. Cooke

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Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

Graham J. Etherington, D. S. Shaw, Rhys A. Farrer, 2012, PLoS pathogens.

Origin of a new Phytophthora pathogen through interspecific hybridization.

J. Duncan, C. Brasier, D. Cooke, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Downy mildew (Peronospora rubi) in Rubus arcticus: a threat to commercial berry production in Finland.

B. Williamson, H. Kokko, S. Kärenlampi, 1999 .

European collaboration on eliminating Phytophthora fragariae from strawberry multiplication

J. Duncan, D. Cooke, E. Seemüller, 2000 .

Identification of Phytophthora species on the basis of restriction enzyme fragment analysis of the internal transcribed spacer regions of ribosomal RNA

J. Duncan, D. Cooke, N. A. Williams, 2000 .

Molecular analysis of intraspecific variation between building and ‘wild’ isolates of Serpula lacrymans and their relatedness to S. himantioides

N. A. White, J. Palfreyman, J. Duncan, 2001 .

PHYTO-THREATS: Addressing Threats to UK Forests and Woodlands from Phytophthora; Identifying Risks of Spread in Trade and Methods for Mitigation

P. Cock, A. Pérez-Sierra, Daniel S. Chapman, 2021, Forests.

Phytophthora niederhauserii sp. nov., a polyphagous species associated with ornamentals, fruit trees and native plants in 13 countries

T. Burgess, Z. Abad, A. Pérez-Sierra, 2014, Mycologia.

A molecular method to assess Phytophthora diversity in environmental samples.

L. Schena, D. Cooke, A. Chimento, 2012, Journal of microbiological methods.

Evidence for selection pressure from resistant potato genotypes but not from fungicide application within a clonal Phytophthora infestans population

A. Bourke, E. Mullins, R. Hutten, 2018 .

Identifying, diagnosing and detecting Phytophthora by molecular methods

J. Duncan, D. Cooke, Jim M. Duncan, 2002 .

DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing Phytophthora Diversity in Anthropized and Natural Ecosystems

P. Cock, D. Cooke, E. Randall, 2022, Journal of fungi.

Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil

J. Duncan, D. Cooke, A. Lees, 2005 .

Phytophthora quercina sp. nov., causing root rot of European oaks

T. Jung, H. Blaschke, J. Duncan, 1999 .

Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile.

E. Hansen, J. Duncan, C. Brasier, 2003, Mycological research.

Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans.

S. Whisson, P. Birch, H. Sierotzki, 2014, Molecular plant pathology.

Population structure of Phytophthora infestans in Turkey reveals expansion and spread of dominant clonal lineages and virulence

W. Fry, D. Cooke, G. Özer, 2021 .

Emergence of 13_A2 Blue Lineage of Phytophthora infestans was Responsible for Severe Outbreaks of Late Blight on Tomato in South‐West India

Nirmal Kumar, W. Fry, D. Cooke, 2013 .

Markers, old and new, for examining Phytophthora infestans diversity

D. Cooke, A. Lees, 2004 .

Highly Diverse Phytophthora infestans Populations Infecting Potato Crops in Pskov Region, North-West Russia

Ü. Niinemets, D. Cooke, E. Runno-Paurson, 2022, Journal of fungi.

Downy mildew on Buddleja

D. Cooke, R. Shattock, A. M. Smith, 2006 .

Detection and Quantification of Spongospora subterranea f. sp. subterranea in Soils and on Tubers Using Specific PCR Primers

S. Verrall, J. Duncan, D. Cooke, 1999, European Journal of Plant Pathology.

Genotypic and Phenotypic Structure of the Population of Phytophthora infestans in Egypt Revealed the Presence of European Genotypes

Z. Iqbal, D. Cooke, Julie N. Squires, 2022, Journal of fungi.

Phytophthora captiosa sp. nov. and P. fallax sp. nov. causing crown dieback of Eucalyptus in New Zealand.

C. Brasier, D. Cooke, M. Dick, 2006, Mycological research.

Population monitoring and fungicide sensitivity testing of Phytophthora infestans

D. Cooke, A. Lees, 2021 .

Novel microsatellite markers for the analysis of Phytophthora infestans populations

D. S. Shaw, D. Cooke, A. Lees, 2006 .

Development and application of a PCR‐based ‘molecular tool box’ for the identification of Phytophthora species damaging forests and natural ecosystems

J. Duncan, L. Schena, D. Cooke, 2007 .

Characterization of Phytophthora infestans populations in Cyprus, the southernmost potato-producing European country.

N. Nikoloudakis, D. Cooke, L. Kanetis, 2021, Plant disease.

Migration and Selection Enforced Multiple Phenotypic and Genotypic Changes in the Population of Phytophthora infestans in Israel during the Last 36-Year Period

Y. Cohen, D. Cooke, A. Rubin, 2020 .

Diversity of Phytophthora infestans from Poland

K. Dębski, D. Cooke, S. Sobkowiak, 2014 .

Fungal infections of micropropagated plants at weaning: a problem exemplified by downy mildews in Rubus and Rosa

C. Leifert, B. Williamson, J. Duncan, 2004, Plant Cell, Tissue and Organ Culture.

Characterisation of Phytophthora infestans Isolates of Potato Crops from Spain

D. Cooke, Roberto Tierno, Nestor Alor, 2019, Potato Research.

A molecular phylogeny of Phytophthora and related oomycetes.

J. Duncan, C. Brasier, D. Cooke, 2000, Fungal genetics and biology : FG & B.

Phylogenetic analysis of Phytophthora species based on ITS1 and ITS2 sequences of the ribosomal RNA gene repeat

J. Duncan, D. Cooke, 1997 .

J. Russell, J. Duncan, D. Kennedy, 1996 .

Diagnosis and detection of Phytophthora fragariae in raspberry and strawberry 1

J. Duncan, D. Cooke, S. Unkles, 1995 .

The expansion of Phytophthora clade 8b: three new species associated with winter grown vegetable crops

H. Brouwer, M. Höfte, D. Cooke, 2013, Persoonia.

The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp. nov.

T. Jung, A. Vannini, A. Vettraino, 2013 .

Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker.

D. Cooke, R. Mostowfizadeh‐Ghalamfarsa, Z. Banihashemi, 2010, Fungal biology.

A Combination of Baiting and Different PCR Formats, Including Measurement of Real-Time Quantitative Fluorescence, For the Detection of Phytophthora fragariae in Strawberry Plants

J. Duncan, D. Cooke, P. Bonants, 2004, European Journal of Plant Pathology.

Characterization of Phytophthora infestans populations in northwestern Algeria during 2008-2014.

L. Schena, D. Cooke, E. Randall, 2017, Fungal biology.

Analysis of intraspecific and interspecific variation in the genus Alternaria by the use of RAPD-PCR

D. M. Lewis, P. D. Jenkins, J. Forster, 1998 .

Assessing the potential of regions of the nuclear and mitochondrial genome to develop a "molecular tool box" for the detection and characterization of Phytophthora species.

L. Schena, D. Cooke, 2006, Journal of microbiological methods.

Detection and quantification of Phytophthora ramorum, P. kernoviae, P. citricola and P. quercina in symptomatic leaves by multiplex real-time PCR.

L. Schena, D. Cooke, K. Hughes, 2006, Molecular plant pathology.

TOOLS TO DETECT, IDENTIFY AND MONITOR PHYTOPHTHORA SPECIES IN NATURAL ECOSYSTEMS

L. Schena, D. Cooke, S. O. Cacciola, 2007 .

Detection and quantification of Phytophthora species which are associated with root‐rot diseases in European deciduous forests by species‐specific polymerase chain reaction

T. Jung, J. Duncan, D. Cooke, 1999 .

Detection and identification of Phytophthora fragariae Hickman by the polymerase chain reaction

Jim Duncan, J. Duncan, D. Cooke, 1997, European Journal of Plant Pathology.

The Use of Nested PCR for the Detection of Phytophthora Fragariae in Strawberry

J. Duncan, D. Cooke, P. Bonants, 1997 .

Phytophthora acerina sp. nov., a new species causing bleeding cankers and dieback of Acer pseudoplatanus trees in planted forests in northern Italy

T. Jung, D. Cooke, Julie N. Squires, 2014 .

Phytophthora infestans and potato late blight in Europe.

K. Lamour, B. Andersson, D. Cooke, 2013 .

Production of phytotoxic spore germination liquids by Alternaria brassicae and A. brassicicola and their effect on species of the family Brassicaceae

D. M. Lewis, P. D. Jenkins, D. Cooke, 1997 .

The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

William E. Fry, Javier F. Tabima, Niklaus J. Grünwald, 2014, Proceedings of the National Academy of Sciences.

Variability in pathotype, aggressiveness, RAPD profile, and rDNA ITS1 sequences of UK isolates of Rhynchosporium secalis

Adrian C. Newton, Christine A. Hackett, A. Newton, 2001 .

Utilizing “Omic” Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections

G. Bryan, Katie Baker, M. Armstrong, 2016, Front. Plant Sci..

Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans.

Ying Li, E. Jacobsen, D. Cooke, 2013, Journal of microbiological methods.

Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants.

F. Govers, S. Whisson, P. Boevink, 2011, The New phytologist.

Phytophthora pistaciae sp. nov. and P. melonis: the principal causes of pistachio gummosis in Iran.

J. Duncan, D. Cooke, N. A. Williams, 2001 .

Molecular evidence supports Phytophthora quercina as a distinct species

T. Jung, J. Duncan, D. Cooke, 1999 .

Climate Change and Defense against Pathogens in Plants.

A. Newton, L. Torrance, Eleanor M. Gilroy, 2012, Advances in applied microbiology.

Survival, distribution and genetic variability of inoculum of the strawberry red core pathogen, Phytophthora fragariae var. fragariae, in soil

A. Newton, N. Augustin, J. Duncan, 2010 .

Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina

T. Jung, J. Duncan, D. Cooke, 2005 .

A New Phytophthora sp. Causing a Basal Canker on Beech in Italy.

D. Cooke, A. Pane, S. O. Cacciola, 2003, Plant disease.

Population structure of Phytophthora infestans collected on potato and tomato in Italy

A. Testa, J. Ristaino, D. Cooke, 2021, Plant Pathology.

Insights into evolving global populations of Phytophthora infestans via new complementary mtDNA haplotype markers and nuclear SSRs

N. Grünwald, W. Fry, M. Coffey, 2019, PloS one.

An Ephemeral Sexual Population of Phytophthora infestans in the Northeastern United States and Canada

S. Restrepo, C. Smart, G. Danies, 2014, PloS one.

Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees.

T. Jung, C. Brasier, D. Cooke, 2004, Mycological research.

Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants.

L. Schena, D. Cooke, S. O. Cacciola, 2015 .

Phytophthora pseudosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe.

T. Jung, J. Duncan, D. Cooke, 2003, Mycological research.

Mating Type and Aggressiveness of Phytophthora infestans (Mont.) de Bary in Potato-Growing Areas of Punjab, Pakistan, 2017–2018 and Identification of Genotype 13_A2 in 2019–2020

D. Cooke, L. Cooke, L. Sullivan, 2020, Potato Research.

Mating Type and Aggressiveness of Phytophthora infestans (Mont.) de Bary in Potato-Growing Areas of Punjab, Pakistan, 2017–2018 and Identification of Genotype 13_A2 in 2019–2020

D. Cooke, L. Cooke, L. Sullivan, 2020, Potato Research.

Elevating crop disease resistance with cloned genes

Jonathan D. G. Jones, S. Foster, Florian Jupe, 2014, Philosophical Transactions of the Royal Society B: Biological Sciences.

Outcome of sexual reproduction in the Phytophthora infestans population in Estonian potato fields

I. Williams, D. Cooke, E. Runno-Paurson, 2018, European Journal of Plant Pathology.

Outcome of sexual reproduction in the Phytophthora infestans population in Estonian potato fields

I. Williams, D. Cooke, E. Runno-Paurson, 2018 .

Severe outbreaks of late blight on potato and tomato in South India caused by recent changes in the Phytophthora infestans population

W. Fry, D. Cooke, P. Chowdappa, 2015 .

Phenotypic and genotypic diversity of Phytophthora infestans populations in Scotland (1995–97)

P. Birch, J. Duncan, D. Cooke, 2003 .

Population Dynamics of Phytophthora infestans in Egypt Reveals Clonal Dominance of 23_A1 and Displacement of 13_A2 Clonal Lineage

D. Cooke, M. Sattar, S. El-Ganainy, 2023, Journal of fungi.

Eucablight : collating and analysing pathogenicity and resistance data on a European scale

J. Hansen, D. Cooke, L. Cooke, 2007 .

Population Genetics and Population Diversity of Phytophthora infestans

K. Cao, A. McLeod, W. Fry, 2008 .

Phenotypic and Genotypic Analysis of the Population of Phytophthora infestans in Bangladesh Between 2014 and 2019

Muhammad Iqbal Hossain, A. Al Mahmud, M. Islam, 2022, Potato Research.

Diversity of populations of Phytophthora infestans in relation to patterns of potato crop management in Latvia and Lithuania

J. Hansen, I. Williams, D. Cooke, 2019, Plant Pathology.

The dynamics of Phytophthora infestans populations in the major potato‐growing regions of Asia – A review

D. Cooke, L. Cooke, T. Dey, 2021 .

Genotypic and phenotypic characterization ofPhytophthora infestansin South Korea during 2009–2016 reveals clonal reproduction and absence of EU_13_A2 genotype

J. Vossen, D. Cooke, S. Hong, 2020 .

Severe outbreaks of Phytophthora infestans on potato in Turkey caused by recent changes in the pathogen population structure

W. Fry, D. Cooke, G. Özer, 2019, Phytoparasitica.

Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India

W. Fry, J. Ristaino, S. Tripathy, 2018, Scientific Reports.

Investigating the phenotypic traits as potential drivers of the emergence of EU_37_A2, an invasive new lineage of Phytophthora infestans in Western Europe

J. Hansen, M. Leclerc, D. Cooke, 2023, Plant Pathology.

Making sense of Phytophthora infestans diversity at national and international scales.

D. Cooke, A. Lees, P. Lassen, 2012 .

Survey of GB blight populations.

D. Cooke, Moray C. Taylor, A. Lees, 2007 .

Re-emergence of the Ib mitochondrial haplotype within the British and Irish Phytophthora infestans populations

D. Cooke, L. Cooke, K. Deahl, 2013, European journal of plant pathology.

From a European to a global database of Phytophthora infestans genetic diversity: examining the nature and significance of population change.

F. Govers, J. Hansen, W. Fry, 2009 .

Atypical late blight symptoms following first recorded infections by Phytophthora infestans genotype EU_39_A1 in UK vine tomatoes

D. Cooke, M. Žerjav, G. Keane, 2019, New Disease Reports.

Competition between genotypes of Phytophthora infestans.

D. Cooke, L. Cooke, A. Lees, 2012 .

The status of GB blight populations and the threat of oospores.

D. Cooke, Moray C. Taylor, A. Lees, 2008 .

Development of specific PCR primers for identification and detection of Phytophthora capsici Leon

F. Merino, C. Silvar, J. Duncan, 2005, European Journal of Plant Pathology.

Information that DSS builders can find in the Eucablight database

G.J.T. Kessel, L. T. Colon, David E. L. Cooke, 2006 .

IS PHYTOPHTHORA INFESTANS A GOOD TAXONOMIST? HOST RECOGNITION AND CO-EVOLUTION IN THE PHYTOPHTHORA/SOLANUM INTERACTION

G. Forbes, D. Cooke, R. Oliva, 2007 .

Molecular identification and detection of Phytophthora species on some important Mediterranean plants including sweet chestnut

J. Duncan, D. Cooke, N. A. Williams, 2001 .

Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea.

K. Lamour, R. Donahoo, J. Moulton, 2006, Mycological research.

Optimizing the use of curative late blight fungicides

G. Loake, D. Cooke, N. Havis, 2017 .

An Its-Based Phylogenetic Analysis of the Relationships Between Peronospora and Phytophthora

B. Williamson, J. Duncan, D. Cooke, 2002 .

Phytophthora parsiana sp. nov., a new high-temperature tolerant species.

D. Cooke, R. Mostowfizadeh‐Ghalamfarsa, Z. Banihashemi, 2008, Mycological research.

Wilt and Collapse of Cuphea ignea Caused by Phytophthora tropicalis in Italy.

D. Cooke, S. O. Cacciola, F. Raudino, 2006, Plant disease.

Metabarcoding Analysis of Phytophthora Diversity Using Genus-Specific Primers and 454 Pyrosequencing.

A. Abdelfattah, L. Schena, D. Cooke, 2016, Phytopathology.

Phytophthora and gummosis of pistachio in Iran

J. Duncan, D. Cooke, N. A. Williams, 2002 .

Re-emergence of the Ib mitochondrial haplotype within the British and Irish Phytophthora infestans populations

D. Cooke, L. Cooke, K. Deahl, 2012, European Journal of Plant Pathology.

A potato gene encoding a WRKY-like transcription factor is induced in interactions with Erwinia carotovora subsp. atroseptica and Phytophthora infestans and is coregulated with class I endochitinase expression.

A. Avrova, P. Birch, E. T. Palva, 2000, Molecular plant-microbe interactions : MPMI.

INTRASPECIFIC GENETIC DIVERSITY OF Phytophthora cryptogea and P. drechsleri

D. Cooke, R. Mostowfizadeh‐Ghalamfarsa, Z. Banihashemi, 2014 .

Molecular variability in sexually reproducing fungal plant pathogens.

P. Birch, J. Duncan, D. Cooke, 1998 .

Methods for Detection of Phytophthora fragariae var. rubi on Raspberry

D. Cooke, R. Jevtić, I. Dulic-Markovic, 2009 .

Comparison of a baiting method and PCR for the detection of Phytophthora fragariae var. rubi in certified raspberry stocks

D. Cooke, A. Schlenzig, J. Chard, 2005 .

The use of nested PCR in the polymerase chain reaction for the detection of Phytophthora fragariae and P. cactorum in strawberry

J. Duncan, D. Cooke, P. Bonants, 1997 .

Comparative testing of nested PCR-based methods with bait-plant tests for detecting Phytophthora fragariae var. fragariae in infected strawberry roots from fruit crops in the UK*

D. Cooke, K. Hughes, A. Inman, 2000 .

WORK ON RASPBERRY ROOT ROT AT THE SCOTTISH CROP RESEARCH INSTITUTE

J. Duncan, D. Cooke, J. M. Duncan, 2002 .

Forecasting the spread of aerially transmitted crop diseases with a binary classifier for inoculum survival

P. Skelsey, D. Cooke, A. Lees, 2018 .

Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia

Javier F. Tabima, L. E. Lagos, S. Restrepo, 2018, Persoonia.

THAPBI PICT—a fast, cautious, and accurate metabarcoding analysis pipeline

P. Cock, P. Thorpe, L. Pritchard, 2023, bioRxiv.

Ecological speciation within the Phytophthora genus

Javier F. Tabima, L. E. Lagos, S. Restrepo, 2016, bioRxiv.

Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry

M. Bayer, C. Hackett, J. Graham, 2011, Theoretical and Applied Genetics.

Monitoring the Danish population of potato late blight pathogen, Phytophthora infestans in 2011-2012 and occurrence of 13_A2.

J. Hansen, D. Cooke, H. Schepers, 2014 .