S. Cologna

发表

ATLAS detector and physics performance : Technical Design Report, 1

Gibson, M. L. Ferrer, W. W. Armstrong, 1999 .

M. L. Ferrer, W. W. Armstrong, A. G. Frodesen, 1995 .

ATLAS calorimeter performance Technical Design Report

Dominique Breton, Joseph A. Paradiso, Reinhard Männer, 1996 .

Mass spectrometry imaging reveals ganglioside and ceramide localization patterns during cerebellar degeneration in the Npc1−/− mouse model

S. Cologna, F. Tobias, Koralege C. Pathmasiri, 2019, Analytical and Bioanalytical Chemistry.

Visualising Cholesterol in Brain by On-Tissue Derivatisation and Quantitative Mass Spectrometry Imaging

M. Clench, W. Griffiths, Yuqin Wang, 2020 .

Mass Spectrometry Imaging of Cholesterol.

S. Cologna, 2019, Advances in experimental medicine and biology.

ATLAS computing technical proposal

Joseph A. Paradiso, Reinhard Männer, R. Van Berg, 1996 .

An Integrated Approach to Protein Discovery and Detection From Complex Biofluids

S. Cologna, J. Burdette, Laura M. Sanchez, 2022, bioRxiv.

Combining isoelectric point-based fractionation, liquid chromatography and mass spectrometry to improve peptide detection and protein identification

S. Cologna, D. Russell, G. Vigh, 2010, Journal of the American Society for Mass Spectrometry.

An Efficient Approach to Evaluate Reporter Ion Behavior from MALDI-MS/MS Data for Quantification Studies Using Isobaric Tags.

Jaqueline A. Picache, B. Searle, A. Yergey, 2015, Journal of Proteome Research.

Standard-flow LC and thermal focusing ESI elucidates altered liver proteins in late stage Niemann-Pick, type C1 disease.

Melissa R. Pergande, E. Bongarzone, S. Cologna, 2019, Bioanalysis.

ProteinProcessor: A probabilistic analysis using mass accuracy and the MS spectrum

B. Searle, J. Epstein, A. Yergey, 2016, Proteomics.

PPARα and PPARγ Signaling Is Enhanced in the Brain of the Naked Mole-Rat, a Mammal that Shows Intrinsic Neuroprotection from Oxygen Deprivation.

Melissa R. Pergande, T. Park, S. Cologna, 2021, Journal of proteome research.

Loss of MACF1 Abolishes Ciliogenesis and Disrupts Apicobasal Polarity Establishment in the Retina.

Koray D. Kaya, Tiansen Li, R. Petralia, 2016, Cell reports.

Loss of MACF 1 Abolishes Ciliogenesis and Disrupts Apicobasal Polarity Establishment in the Retina Graphical

Koray D. Kaya, Tiansen Li, R. Petralia, 2016 .

Probing the force-from-lipid mechanism with synthetic polymers

Leo C. T. Ng, Neha P. Kamat, J. Steinkühler, 2022, bioRxiv.

Quantitative, Label‐Free Proteomics in the Symptomatic Niemann–Pick, Type C1 Mouse Model Using Standard Flow Liquid Chromatography and Thermal Focusing Electrospray Ionization

Melissa R. Pergande, S. Cologna, C. Davidson, 2019, Proteomics.

Comparison of the NO and HNO donating properties of diazeniumdiolates: primary amine adducts release HNO in Vivo.

D. Kass, K. Houk, D. Wink, 2005, Journal of medicinal chemistry.

Results from a new combined test of an electromagnetic liquid argon calorimeter with a hadronic scintillating-tile calorimeter

J. P. Taguet, José Paulo Santos, C. Bromberg, 1997 .

Supplemental Information Loss of MACF 1 Abolishes Ciliogenesis and Disrupts Apicobasal Polarity Establishment in the Retina

Koray D. Kaya, Tiansen Li, R. Petralia, 2016 .

Isoelectric Trapping and Mass Spectrometry: Tools for Proteomics

S. Cologna, 2012 .

EUROPEAN ORGANIZATION FOR NUCLEAR RESEARCH CERN-PPE/96-178 8 November 1996 RESULTS FROM A COMBINED TEST OF AN ELECTROMAGNETIC LIQUID ARGON CALORIMETER WITH A HADRONIC SCINTILLATING-TILE CALORIMETER ATLAS Collaboration (Calorimetry and Data Acquisition)

G. Bellettini, C. Bromberg, J. Budagov, 1996 .

Cyclodextrin and malto-dextrose collision cross sections determined in a drift tube ion mobility mass spectrometer using nitrogen bath gas.

A. Yergey, P. Backlund, P. Blank, 2018, The Analyst.

Characterization of hydroxypropyl-beta-cyclodextrins used in the treatment of Niemann-Pick Disease type C1

A. Yergey, P. Backlund, P. Blank, 2017, PloS one.

Exposure to microwave irradiation at constant culture temperature slows the growth of Escherichia coli DE3 cells, leading to modified proteomic profiles

Melissa R. Pergande, J. Coorssen, Hongbin Yan, 2019, RSC advances.

Clinical Case Report: LECT2-Associated Adrenal Amyloidosis

M. Merino, C. Stratakis, R. Shamburek, 2015 .

Lipidomic Analysis Reveals Altered Fatty Acid Metabolism in the Liver of the Symptomatic Niemann–Pick, Type C1 Mouse Model

Melissa R. Pergande, S. Cologna, Fidel Serna‐Perez, 2019, Proteomics.

Waning efficacy in a long-term AAV-mediated gene therapy study in the murine model of Krabbe disease

E. Bongarzone, R. V. van Breemen, M. Sands, 2021, Molecular therapy : the journal of the American Society of Gene Therapy.

Altered cerebrospinal fluid proteins in Smith–Lemli–Opitz syndrome patients

S. Cologna, F. Porter, C. Wassif, 2016, American journal of medical genetics. Part A.

Fallopian tube secreted protein affects ovarian metabolites in high grade serous ovarian cancer

Melissa R. Pergande, Katherine E. Zink, S. Cologna, 2022, Frontiers in Cell and Developmental Biology.

Targeting lipid–protein interaction to treat Syk-mediated acute myeloid leukemia

Melissa R. Pergande, E. Tajkhorshid, N. Mahmud, 2022, Nature Chemical Biology.

Efficient electrophoretic method to remove neutral additives from protein solutions followed by mass spectrometry analysis.

S. Cologna, D. Russell, G. Vigh, 2011, Analytical Chemistry.

Taurine is covalently incorporated into alpha tubulin.

Melissa R. Pergande, D. Sackett, A. Yergey, 2019, Journal of proteome research.

Histatin‐1 is an endogenous ligand of the sigma‐2 receptor

H. Kong, Sushma Kalmodia, Ryan C. Miller, 2021, The FEBS journal.

Non-Cytokine Protein Profile of the Mesenchymal Stem Cell Secretome That Regulates the Androgen Production Pathway

Melissa R. Pergande, A. Al-Hendy, S. Cologna, 2022, International journal of molecular sciences.

PHY34 inhibits autophagy through V-ATPase V0A2 subunit inhibition and CAS/CSE1L nuclear cargo trafficking in high grade serous ovarian cancer

Melissa R. Pergande, M. Schirle, K. Ratia, 2022, Cell death & disease.

PAX8 modulates the tumor microenvironment of high grade serous ovarian cancer through changes in the secretome

Melissa R. Pergande, S. Cologna, J. Burdette, 2022, Neoplasia.

Mass spectrometry imaging and LC/MS reveal decreased cerebellar phosphoinositides in Niemann-Pick type C1-null mice[S]

Melissa R. Pergande, E. Bongarzone, S. Cologna, 2020, Journal of Lipid Research.

Mass spectrometry imaging of lipids: untargeted consensus spectra reveal spatial distributions in Niemann-Pick disease type C1

S. Cologna, Matthew T. Olson, F. Tobias, 2020 .

Mass spectrometry imaging of lipids: untargeted consensus spectra reveal spatial distributions in Niemann-Pick disease type C1[S]

S. Cologna, Matthew T. Olson, F. Tobias, 2018, Journal of Lipid Research.

Quantitative Proteomic Analysis of Niemann-Pick Disease, Type C1 Cerebellum Identifies Protein Biomarkers and Provides Pathological Insight

A. Yergey, P. Backlund, C. Cluzeau, 2012, PloS one.

Human and mouse neuroinflammation markers in Niemann-Pick disease, type C1

P. Blank, A. Lieberman, C. Cluzeau, 2014, Journal of Inherited Metabolic Disease.

Considerations for mass spectrometry-based multi-omic analysis of clinical samples

Esei T Teclemariam, Melissa R Pergande, Stephanie M Cologna, 2020, Expert review of proteomics.

Loss of Depalmitoylation Exaggerates Synaptic Upscaling and Leads to Neuroinflammation in a Lysosomal Storage Disease

Kuei Yuan Tseng, S. Cologna, E. Flores-Barrera, 2021, bioRxiv.

Isoelectric Point Separations of Peptides and Proteins

Melissa R. Pergande, S. Cologna, 2017, Proteomes.

The Pathogenic Sphingolipid Psychosine is Secreted in Extracellular Vesicles in the Brain of a Mouse Model of Krabbe Disease

E. Bongarzone, R. V. van Breemen, S. Cologna, 2022, ASN neuro.

Changes to the Human Serum Proteome in Response to High Intensity Interval Exercise: A Sequential Top-Down Proteomic Analysis

Melissa R. Pergande, J. Coorssen, S. Cologna, 2019, Front. Physiol..

Defective Cytochrome P450-Catalysed Drug Metabolism in Niemann-Pick Type C Disease

W. Pavan, C. Vite, W. Figg, 2016, PloS one.

Genomes and Characterization of Phages Bcep22 and BcepIL02, Founders of a Novel Phage Type in Burkholderia cenocepacia

J. Gill, J. Lipuma, S. Cologna, 2011, Journal of bacteriology.

Identification of cerebral spinal fluid protein biomarkers in Niemann-Pick disease, type C1

Ryan K. Dale, N. Cawley, E. Berry-Kravis, 2023, Biomarker Research.

Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement.

Arul Jayaraman, David H Russell, Stephanie M Cologna, 2011, Journal of proteome research.

Activated Mesenchymal Stem Cells Induce Recovery Following Stroke Via Regulation of Inflammation and Oligodendrogenesis

Melissa R. Pergande, A. Bartholomew, S. Cologna, 2020, Journal of the American Heart Association.

Deregulation of signalling in genetic conditions affecting the lysosomal metabolism of cholesterol and galactosyl-sphingolipids

E. Bongarzone, S. Cologna, M. Givogri, 2020, Neurobiology of Disease.

Proteomic analysis reveals a role for PAX8 in peritoneal colonization of high grade serous ovarian cancer that can be targeted with micelle encapsulated thiostrepton

Melissa R. Pergande, S. Cologna, J. Burdette, 2019, Oncogene.

Investigation of 2-Hydroxypropyl-β-Cyclodextrin Treatment in a Neuronal-Like Cell Model of Niemann-Pick Type C Using Quantitative Proteomics.

Melissa R. Pergande, S. Cologna, A. Cougnoux, 2023, Journal of the American Society for Mass Spectrometry.

Species-specific differences in NPC1 protein trafficking govern therapeutic response in Niemann-Pick type C disease

M. Uhler, A. Lieberman, S. Cologna, 2022, JCI insight.

Insights into the Molecular Mechanisms of Cholesterol Binding to the NPC1 and NPC2 Proteins.

S. Cologna, A. Rosenhouse‐Dantsker, 2019, Advances in experimental medicine and biology.

A differential proteomics study of cerebrospinal fluid from individuals with Niemann‐Pick disease, Type C1

Melissa R. Pergande, Jaqueline A. Picache, B. Searle, 2023, Proteomics.

Visualizing Cholesterol in the Brain by On-Tissue Derivatization and Quantitative Mass Spectrometry Imaging

M. Clench, W. Griffiths, Yuqin Wang, 2021, Analytical chemistry.

Differential Proteomics Reveals miR-155 as a Novel Indicator of Liver and Spleen Pathology in the Symptomatic Niemann-Pick Disease, Type C1 Mouse Model

Melissa R. Pergande, S. Cologna, F. Porter, 2019, Molecules.

Mass spectrometry-based lipid analysis and imaging.

S. Cologna, Koralege C. Pathmasiri, T. T. Nguyen, 2021, Current topics in membranes.

Lipidomic analysis identifies age-disease-related changes and potential new biomarkers in brain-derived extracellular vesicles from metachromatic leukodystrophy mice

Melissa R. Pergande, S. Cologna, M. Givogri, 2022, Lipids in health and disease.

Studies of histidine as a suitable isoelectric buffer for tryptic digestion and isoelectric trapping fractionation followed by capillary electrophoresis-mass spectrometry for proteomic analysis.

S. Cologna, D. Russell, G. Vigh, 2011, Analytical chemistry.

Steroid hormones of the octopus self-destruct system

Melissa R. Pergande, C. W. Ragsdale, Z. Y. Wang, 2022, Current Biology.

Investigating Phosphorylation Patterns of the Ion Channel TRPM7 Using Multiple Extraction and Enrichment Techniques Reveals New Phosphosites

T. Park, S. Cologna, T. T. Nguyen, 2019, Journal of The American Society for Mass Spectrometry.

Hadronic shower development in Iron-Scintillator Tile Calorimetry

C. Bromberg, J. Budagov, M. Cavalli-Sforza, 2000 .

Characterization of the Cerebrospinal Fluid Proteome in Patients with Fragile X-Associated Tremor/Ataxia Syndrome

D. Hall, E. Berry-Kravis, S. Cologna, 2021, The Cerebellum.

Characterization of the Cerebrospinal Fluid Proteome in Patients with Fragile X-Associated Tremor/Ataxia Syndrome

D. Hall, E. Berry-Kravis, S. Cologna, 2021, The Cerebellum.

A novel approach to collision-induced dissociation (CID) for ion mobility-mass spectrometry experiments

F. Fernandez-Lima, S. Cologna, D. Russell, 2009, Journal of the American Society for Mass Spectrometry.

Extracellular and intracellular sphingosine‐1‐phosphate distinctly regulates exocytosis in chromaffin cells

S. Alford, S. Cologna, R. Haberberger, 2019, Journal of neurochemistry.

Lipid membranes from naked mole-rat brain lipids are cholesterol-rich, highly phase-separated, and sensitive to amyloid-induced damage

Melissa R. Pergande, B. Bhushan, M. Vendruscolo, 2020, bioRxiv.

Cholesterol-rich naked mole-rat brain lipid membranes are susceptible to amyloid beta-induced damage in vitro

Melissa R. Pergande, B. Bhushan, M. Vendruscolo, 2020, Aging.

Gel-assisted mass spectrometry imaging

S. Cologna, Koralege C. Pathmasiri, Yat Ho Chan, 2023, bioRxiv.

Hadron energy reconstruction for the ATLAS calorimetry in the framework of the non-parametrical method

C. Bromberg, J. Budagov, M. Cavalli-Sforza, 2002 .

01 04 00 2 v 2 2 3 M ay 2 00 1 Hadron Energy Reconstruction for the ATLAS Calorimetry in the Framework of the Non-parametrical Method ATLAS Collaboration ( Calorimetry and Data Acquisition )

C. Bromberg, J. Budagov, M. Cavalli-Sforza, 2001 .

SMART: A data reporting standard for mass spectrometry imaging

D. Muddiman, S. Cologna, B. Prentice, 2023, Journal of mass spectrometry : JMS.

A calcium message for Niemann-Pick type C

S. Cologna, 2019, The Journal of cell biology.

3D Quantification of Elemental Gradients within Heterostructured Particles of Battery Cathodes

J. Cabana, V. De Andrade, S. Cologna, 2023, ACS Energy Letters.

Alfred L. Yergey III (September 17, 1941–May 27, 2018)

S. Cologna, P. Gale, 2019, Journal of The American Society for Mass Spectrometry.

Correction: Characterization of hydroxypropyl-beta-cyclodextrins used in the treatment of Niemann-Pick Disease type C1

A. Yergey, P. Backlund, P. Blank, 2018, PLoS ONE.

DBDA Matrix Increases Ion Abundance of Fatty Acids and Sulfatides in MALDI-TOF and Mass Spectrometry Imaging Studies.

Melissa R. Pergande, S. Cologna, Koralege C. Pathmasiri, 2023, Journal of the American Society for Mass Spectrometry.

Correction to: Characterization of the Cerebrospinal Fluid Proteome in Patients with Fragile X-Associated Tremor/Ataxia Syndrome

D. Hall, E. Berry-Kravis, S. Cologna, 2021, Cerebellum.

Elevated cerebrospinal fluid ubiquitin C-terminal hydrolase-L1 levels correlate with phenotypic severity and therapeutic response in Niemann-Pick disease, type C1.

F. Liu, N. Cawley, E. Berry-Kravis, 2023, Molecular genetics and metabolism.

Comparative Hippocampal Proteome and Phosphoproteome in a Niemann-Pick, Type C1 Mouse Model Reveal Insights into Disease Mechanisms.

S. Cologna, Varshasnata Mohanty, T. T. Nguyen, 2023, Journal of proteome research.

Discovery of a Small-Molecule Modulator of the Autophagy-Lysosome Pathway That Targets Lamin A/C and LAMP1, Induces Autophagic Flux, and Affects Lysosome Positioning in Neurons

S. Cologna, T. T. Nguyen, L. Aldrich, 2023, ACS chemical neuroscience.

Relative quantification of progressive changes in healthy and dysferlin‐deficient mouse skeletal muscle proteomes

P. Blank, S. Cologna, A. Golding, 2023, Muscle & nerve.

CD36 maintains lipid homeostasis via selective uptake of monounsaturated fatty acids during matrix detachment and tumor progression.

S. Cologna, S. Kuchay, H. Rho, 2023, Cell metabolism.

Akap5 links synaptic dysfunction to neuroinflammatory signaling in a mouse model of infantile neuronal ceroid lipofuscinosis

S. Cologna, Kevin P. Koster, Kevin M. Woolfrey, 2024, Frontiers in Synaptic Neuroscience.

Optimization of systemic AAV9 gene therapy in Niemann-Pick disease type C1 mice

C. Venditti, S. Cologna, F. Porter, 2024, bioRxiv.

α-Synuclein-dependent increases in PIP5K1γ drive inositol signaling to promote neurotoxicity

Melissa R. Pergande, S. Cologna, E. Dickson, 2023, Cell reports.

Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement.

A. Jayaraman, Billy W. Newton, S. Cologna, 2011, Journal of proteome research.

ProteinProcessor: A probabilistic analysis using mass accuracy and the MS spectrum

B. Searle, A. Yergey, J. Coorssen, 2016, Proteomics.

Lipidomic analysis identifies age-disease-related changes and potential new biomarkers in brain-derived extracellular vesicles from metachromatic leukodystrophy mice

Melissa R. Pergande, S. Cologna, M. Givogri, 2022, Lipids in Health and Disease.