Nicolae Radu Zabet

发表

Stochasticity and Robustness in Bi-Stable Systems

Nicolae Radu Zabet, Dominique F. Chu, D. Chu, 2010, 2010 4th International Conference on Bioinformatics and Biomedical Engineering.

Towards modular, scalable and optimal design of transcriptional logic systems

Nicolae Radu Zabet, N. Zabet, 2010 .

Computational limits to binary genes

Nicolae Radu Zabet, Dominique F Chu, D. Chu, 2010, Journal of The Royal Society Interface.

A comprehensive computational model of facilitated diffusion in prokaryotes

Nicolae Radu Zabet, Boris Adryan, B. Adryan, 2012, Bioinform..

GRiP: a computational tool to simulate transcription factor binding in prokaryotes

Nicolae Radu Zabet, Boris Adryan, B. Adryan, 2012, Bioinform..

Design Principles of Transcriptional Logic Circuits

Nicolae Radu Zabet, Dominique F. Chu, Andrew Hone, 2010, ALIFE.

Optimal parameter settings for information processing in gene regulatory networks

Nicolae Radu Zabet, Dominique F. Chu, Andrew Hone, 2011, Biosyst..

A novel and versatile computational tool to model translation

Nicolae Radu Zabet, Dominique F. Chu, Tobias von der Haar, 2012, Bioinform..

A Comprehensive Computational Model to Simulate Transcription Factor Binding in Prokaryotes

Nicolae Radu Zabet, Boris Adryan, 2012, IPCAT.

System size reduction in stochastic simulations of the facilitated diffusion mechanism

Nicolae Radu Zabet, N. Zabet, 2012, BMC Systems Biology.

Homotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expression

Nicolae Radu Zabet, B. Adryan, Daphne Ezer, 2014, Computational and structural biotechnology journal.

Facilitated diffusion buffers noise in gene expression.

Nicolae Radu Zabet, A. Schoech, 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework

Nicolae Radu Zabet, P. Martin, Patrick C N Martin, 2019, bioRxiv.

Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome.

Nicolae Radu Zabet, Keerthi T Chathoth, 2019, Genome research.

Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome

Nicolae Radu Zabet, Keerthi T Chathoth, N. Zabet, 2018, bioRxiv.

Estimating binding properties of transcription factors from genome-wide binding profiles

Nicolae Radu Zabet, B. Adryan, N. Zabet, 2014, Nucleic acids research.

Physical constraints determine the logic of bacterial promoter architectures

Nicolae Radu Zabet, B. Adryan, Daphne Ezer, 2013, Nucleic acids research.

The effects of transcription factor competition on gene regulation

Nicolae Radu Zabet, B. Adryan, N. Zabet, 2013, Front. Genet..

The Influence of Transcription Factor Competition on the Relationship between Occupancy and Affinity

Nicolae Radu Zabet, B. Adryan, Robert Foy, 2013, PloS one.

Computational models for large-scale simulations of facilitated diffusion.

Nicolae Radu Zabet, B. Adryan, N. Zabet, 2012, Molecular bioSystems.

DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts

Nicolae Radu Zabet, Alessandro Greco, M. Catoni, 2018, Nucleic acids research.

Models of transcription factor binding: sensitivity of activation functions to model assumptions.

Dominique Chu, Boris Mitavskiy, Nicolae Radu Zabet, 2009, Journal of theoretical biology.

Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array

Nicolae Radu Zabet, M. Kumari, Leonard Schalkwyk, 2022, Clinical epigenetics.

Negative feedback and physical limits of genes.

Nicolae Radu Zabet, N. Zabet, 2011, Journal of theoretical biology.

The role of insulators and transcription in 3D chromatin organization of flies

H. K. Dai, Nicolae Radu Zabet, Keerthi T Chathoth, 2022, Genome research.

High-frequency recombination between members of an LTR retrotransposon family during transposition bursts

Nicolae Radu Zabet, J. Paszkowski, D. H. Sanchez, 2017, Nature Communications.

DNA sequence properties that predict susceptibility to epiallelic switching

Nicolae Radu Zabet, D. Weigel, Michal Lieberman-Lazarovich, 2016, bioRxiv.

H4K16ac activates the transcription of transposable elements and contributes to their cis-regulatory function

Nicolae Radu Zabet, M. Branco, P. Scaffidi, 2022, bioRxiv.

Combination of BMI1 and MAPK/ERK inhibitors is effective in medulloblastoma

Nicolae Radu Zabet, S. Brandner, S. Pollard, 2022, Neuro-oncology.

Editorial: Interactions of Plants With Bacteria and Fungi: Molecular and Epigenetic Plasticity of the Host

Nicolae Radu Zabet, L. Lanfranco, V. Fiorilli, 2020, Frontiers in Plant Science.

Overview of the DMRcaller package

Nicolae Radu Zabet, 2016 .

ZipHiC: a novel Bayesian framework to identify enriched interactions and experimental biases in Hi-C data

Nicolae Radu Zabet, Hongsheng Dai, A. Harrison, 2021, bioRxiv.

An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila

Nicolae Radu Zabet, H. Hagras, L. A. Mikheeva, 2021, Genome Biology.

The role of insulators and transcription in 3D chromatin organisation of flies

H. K. Dai, Nicolae Radu Zabet, Keerthi T Chathoth, 2021, bioRxiv.

Analysis of Plant DNA Methylation Profiles Using R.

Nicolae Radu Zabet, M. Catoni, N. Zabet, 2021, Methods in molecular biology.

Physical constraints determine the logic of bacterial promoter architectures

Nicolae Radu Zabet, B. Adryan, Daphne Ezer, 2013, Nucleic acids research.

Cytosine methylation at CpCpG sites triggers accumulation of non-CpG methylation in gene bodies

Nicolae Radu Zabet, J. Paszkowski, M. Catoni, 2017, Nucleic acids research.

Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array

Nicolae Radu Zabet, M. Kumari, Leonard Schalkwyk, 2021, bioRxiv.

Identification of mammalian transcription factors that bind to inaccessible chromatin

Nicolae Radu Zabet, G. Ficz, L. A. Mikheeva, 2023, bioRxiv.

Gene Expression Dominance in Allopolyploids: Hypotheses and Models.

Nicolae Radu Zabet, S. Bottani, R. Veitia, 2018, Trends in plant science.

Characterising sex differences of autosomal DNA methylation in whole blood using the Illumina EPIC array

Nicolae Radu Zabet, M. Kumari, Leonard Schalkwyk, 2022, Clinical Epigenetics.

High-frequency recombination between members of an LTR retrotransposon family during transposition bursts

Nicolae Radu Zabet, J. Paszkowski, D. H. Sanchez, 2017, Nature Communications.

Optimal parameter settings for information processing in gene regulatory networks

Nicolae Radu Zabet, A. Hone, D. Chu, 2011, Biosyst..