A. Chatterjee

发表

A bistable genetic switch controls antibiotic resistance transfer in Enterococcus faecalis.

A. Chatterjee, Anushree Chatterjee, 2011 .

Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation

Wei-Shou Hu, D. Ramkrishna, Y. Kaznessis, 2011, Proceedings of the National Academy of Sciences.

Biofilm growth alters regulation of conjugation by a bacterial pheromone

Wei-Shou Hu, G. Dunny, A. Barnes, 2011, Molecular microbiology.

Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response

L. Stodieck, D. Klaus, S. Levy, 2018, Front. Microbiol..

Hepatitis C viral kinetics: the past, present, and future.

Anushree Chatterjee, Alan S Perelson, A. Perelson, 2013, Clinics in liver disease.

Convergent Transcription in the Butyrolactone Regulon in Streptomyces coelicolor Confers a Bistable Genetic Switch for Antibiotic Biosynthesis

Wei-Shou Hu, Eriko Takano, Yiannis N. Kaznessis, 2011, PloS one.

Nucleotide and structural label identification in single RNA molecules with quantum tunneling spectroscopy† †Electronic supplementary information (ESI) available: Details of the base-calling algorithm and additional figures as described in the text. See DOI: 10.1039/c8sc03354d

Lee E. Korshoj, P. Nagpal, A. Chatterjee, 2018, Chemical science.

Conformational Smear Characterization and Binning of Single-Molecule Conductance Measurements for Enhanced Molecular Recognition.

Lee E. Korshoj, P. Nagpal, A. Chatterjee, 2017, Journal of the American Chemical Society.

Quantum Point Contact Single-Nucleotide Conductance for DNA and RNA Sequence Identification.

Lee E. Korshoj, P. Nagpal, A. Chatterjee, 2017, ACS nano.

A Pharmacokinetic/Viral Kinetic Model to Evaluate the Treatment Effectiveness of Danoprevir against Chronic HCV

A. Perelson, A. Chatterjee, J. Guedj, 2014, Antiviral therapy.

CRISPR Gene Perturbations Provide Insights for Improving Bacterial Biofuel Tolerance

A. Chatterjee, P. Otoupal, Anushree Chatterjee, 2018, Front. Bioeng. Biotechnol..

Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution

Keesha E. Erickson, A. Chatterjee, P. Otoupal, 2017, mSphere.

Modelling the Interaction between Danoprevir and Mericitabine in the Treatment of Chronic HCV Infection

A. Perelson, A. Chatterjee, J. Guedj, 2016, Antiviral therapy.

Role of Intracellular Stochasticity in Biofilm Growth. Insights from Population Balance Modeling

D. Ramkrishna, C. Shu, A. Chatterjee, 2013, PloS one.

Multiple Energy Exciton Shelves in Quantum-Dot-DNA Nanobioelectronics.

P. Nagpal, A. Chatterjee, J. C. Ribot, 2014, The journal of physical chemistry letters.

Nanoligomers Targeting Human miRNA for the Treatment of Severe COVID-19 Are Safe and Nontoxic in Mice

P. Nagpal, Jared M Brown, A. Chatterjee, 2022, ACS biomaterials science & engineering.

Screening Immunotherapy Targets to Counter Radiation-Induced Neuroinflammation

P. Nagpal, A. Chatterjee, M. Weil, 2022, bioRxiv.

Identifying Optimal Neuroinflammation Treatment Using Nanoligomer™ Discovery Engine

C. Link, P. Nagpal, A. Chatterjee, 2022, bioRxiv.

Cis-Antisense Transcription Gives Rise to Tunable Genetic Switch Behavior: A Mathematical Modeling Approach

A. Chatterjee, A. Bordoy, 2015, PloS one.

Intracellular Hepatitis C Virus Modeling Predicts Infection Dynamics and Viral Protein Mechanisms

A. Perelson, G. Subramanya, A. Chatterjee, 2018, Journal of Virology.

Construction of two-input logic gates using Transcriptional Interference

A. Chatterjee, A. Bordoy, Nolan J. O’Connor, 2019, bioRxiv.

Reversing Radiation-Induced Immunosuppression Using a New Therapeutic Modality

P. Nagpal, A. Chatterjee, M. Weil, 2022, bioRxiv.

Targeting neuroinflammatory pathways using Nanoligomers™ is neuroprotective in prion disease

P. Nagpal, J. Moreno, A. Chatterjee, 2022, bioRxiv.

Identifying Optimal Neuroinflammation Treatment Using Nanoligomer™ Discovery Engine

C. Link, P. Nagpal, A. Chatterjee, 2022, bioRxiv.

Transcriptional Interference in Convergent Promoters as a Means for Tunable Gene Expression.

U. Varanasi, A. Chatterjee, Colleen M Courtney, 2016, ACS synthetic biology.

Safety and Biodistribution of Nanoligomers Targeting the SARS-CoV-2 Genome for the Treatment of COVID-19

P. Nagpal, Jared M Brown, A. Chatterjee, 2022, bioRxiv.

Construction of two-input logic gates using Transcriptional Interference.

A. Chatterjee, A. Bordoy, Nolan J. O’Connor, 2019, ACS synthetic biology.

Assessing Different Reactive Oxygen Species as Potential Antibiotics: Selectivity of Intracellular Superoxide Generation Using Quantum Dots.

P. Nagpal, P. Chowdhury, A. Chatterjee, 2018, ACS applied bio materials.

High-Throughput Block Optical DNA Sequence Identification.

Prashant Nagpal, Dodderi Manjunatha Sagar, Lee Erik Korshoj, 2018, Small.

Potentiating antibiotic treatment using fitness-neutral gene expression perturbations

Keesha E. Erickson, A. Chatterjee, Kristen A Eller, 2019, bioRxiv.

Multiplexed deactivated CRISPR-Cas9 gene expression perturbations deter bacterial adaptation by inducing negative epistasis

A. Chatterjee, William T. Cordell, P. Otoupal, 2018, Communications Biology.

Design of a de novo aggregating antimicrobial peptide and bacterial conjugation delivery system

A. Chatterjee, P. Otoupal, Colleen M Courtney, 2018, bioRxiv.

RNA-Mediated Reciprocal Regulation between Two Bacterial Operons Is RNase III Dependent

G. Dunny, Christopher M. Johnson, K. Weaver, 2011, mBio.

cis-Antisense RNA and Transcriptional Interference: Coupled Layers of Gene

A. Chatterjee, Colleen M. Courtney, Anushree Chatterjee, 2014 .

Transcriptome-based design of antisense inhibitors potentiates carbapenem efficacy in CRE Escherichia coli

Keesha E. Erickson, A. Chatterjee, Thomas R. Aunins, 2020, Proceedings of the National Academy of Sciences.

Transcriptome-based design of antisense inhibitors re-sensitizes CRE E. coli to carbapenems

Keesha E. Erickson, A. Chatterjee, Thomas R. Aunins, 2019, bioRxiv.

Isolating the Escherichia coli Transcriptomic Response to Superoxide Generation from Cadmium Chalcogenide Quantum Dots.

P. Nagpal, A. Chatterjee, Kristen A Eller, 2019, ACS biomaterials science & engineering.

The Tolerome: A Database of Transcriptome-Level Contributions to Diverse Escherichia coli Resistance and Tolerance Phenotypes.

Keesha E. Erickson, James D. Winkler, R. Gill, 2017, ACS synthetic biology.

Role of miR-2392 in driving SARS-CoV-2 infection

Larry N. Singh, Amanda M. Saravia-Butler, Deanne M. Taylor, 2021, Cell Reports.

The Great Deceiver: miR-2392’s Hidden Role in Driving SARS-CoV-2 Infection

Larry N. Singh, Amanda M. Saravia-Butler, Deanne M. Taylor, 2021, bioRxiv.

Single Nucleobase Identification Using Biophysical Signatures from Nanoelectronic Quantum Tunneling.

Lee E. Korshoj, P. Nagpal, A. Chatterjee, 2017, Small.

Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations.

Keesha E. Erickson, A. Chatterjee, P. Otoupal, 2015, ACS infectious diseases.

CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints.

Keesha E. Erickson, A. Chatterjee, P. Otoupal, 2017, ACS synthetic biology.

Potentiating antibiotic efficacy via perturbation of non-essential gene expression

Keesha E. Erickson, A. Chatterjee, Thomas R. Aunins, 2021, Communications Biology.

Looking on the horizon; potential and unique approaches to developing radiation countermeasures for deep space travel.

Jamie B. Spangler, Paul R. Sargunas, S. Gerecht, 2022, Life sciences in space research.

CONSTRICTOR: Constraint Modification Provides Insight into Design of Biochemical Networks

Anushree Chatterjee, Ryan T. Gill, Keesha E. Erickson, 2014, PloS one.

Multiplexed deactivated CRISPR-Cas9 gene expression perturbations deter bacterial adaptation by inducing negative epistasis

A. Chatterjee, William T. Cordell, P. Otoupal, 2018, Communications Biology.

MODELING OF GENE REGULATORY PROCESSES BY POPULATION MEDIATED SIGNALING. NEW APPLICATIONS OF POPULATION BALANCES.

Doraiswami Ramkrishna, Wei-Shou Hu, Che-Chi Shu, 2012, Chemical engineering science.

Correction: Bistability versus Bimodal Distributions in Gene Regulatory Processes from Population Balance

D. Ramkrishna, C. Shu, G. Dunny, 2011, PLoS Computational Biology.

Bistability versus Bimodal Distributions in Gene Regulatory Processes from Population Balance

Doraiswami Ramkrishna, Wei-Shou Hu, Che-Chi Shu, 2011, PLoS Comput. Biol..

Tweaking biological switches through a better understanding of bistability behavior.

Wei-Shou Hu, Anushree Chatterjee, Yiannis N Kaznessis, 2008, Current opinion in biotechnology.

ROS mediated selection for increased NADPH availability in Escherichia coli.

Prashant Nagpal, Ryan T Gill, Anushree Chatterjee, 2017, Biotechnology and bioengineering.

High Throughput Viability Assay for Microbiology

Joel M. Kralj, A. Chatterjee, E. J. Miller, 2023, bioRxiv.

Near-Infrared Light Triggered Antimicrobial Indium Phosphide Quantum Dots.

P. Nagpal, A. Chatterjee, J. Bertram, 2019, Angewandte Chemie.

Near‐Infrared‐Light‐Triggered Antimicrobial Indium Phosphide Quantum Dots

P. Nagpal, A. Chatterjee, J. Bertram, 2019, Angewandte Chemie.

Photoexcited quantum dots for killing multidrug-resistant bacteria.

P. Nagpal, A. Chatterjee, N. Madinger, 2016, Nature materials.

Engineering Transcriptional Interference through RNA Polymerase Processivity Control

A. Chatterjee, A. Bordoy, Nolan J. O’Connor, 2020, bioRxiv.

Potentiating antibiotics in drug-resistant clinical isolates via stimuli-activated superoxide generation

T. A. Nagy, P. Nagpal, A. Chatterjee, 2017, Science Advances.

Design of a De Novo Aggregating Antimicrobial Peptide and a Bacterial Conjugation-Based Delivery System.

A. Chatterjee, P. Otoupal, L. Collins, 2018, Biochemistry.

Designing Superoxide-Generating Quantum Dots for Selective Light-Activated Nanotherapy

P. Nagpal, P. Chowdhury, A. Chatterjee, 2018, Front. Chem..

Tuning Ternary Zn1-xCdxTe Quantum Dot Composition: Engineering Electronic States for Light-Activated Superoxide Generation as a Therapeutic against Multidrug-Resistant Bacteria.

P. Nagpal, P. Chowdhury, A. Chatterjee, 2019, ACS biomaterials science & engineering.

Mathematical modelling of HCV infection: what can it teach us in the era of direct-acting antiviral agents?

Anushree Chatterjee, Jeremie Guedj, Alan S Perelson, 2012, Antiviral therapy.

Photoactivated antibiotics to treat intracellular infection of bacteria

P. Nagpal, A. Chatterjee, Max Levy, 2023, Nanoscale advances.

Photoexcited Quantum Dots as Efficacious and Nontoxic Antibiotics in an Animal Model.

P. Nagpal, A. Chatterjee, J. Bertram, 2021, ACS Biomaterials Science & Engineering.

Light-activated quantum dot potentiation of antibiotics to treat drug-resistant bacterial biofilms

P. Nagpal, A. Chatterjee, Dana F. Stamo, 2021, Nanoscale advances.

Facile accelerated specific therapeutic (FAST) platform develops antisense therapies to counter multidrug-resistant bacteria

Keesha E. Erickson, A. Chatterjee, Thomas R. Aunins, 2021, Communications biology.

Antagonistic self-sensing and mate-sensing signaling controls antibiotic-resistance transfer

D. Ramkrishna, C. Shu, G. Dunny, 2013, Proceedings of the National Academy of Sciences.

Improving health in cities through systems approaches for urban water management

L. Rietveld, J. Siri, A. Chatterjee, 2016, Environmental Health.

Engineering Transcriptional Interference through RNA Polymerase Processivity Control.

A. Chatterjee, A. Bordoy, Nolan J. O’Connor, 2021, ACS Synthetic Biology.

Draft Genome Sequences of Clinical Isolates of Multidrug-Resistant Acinetobacter baumannii

Keesha E. Erickson, A. Chatterjee, N. Madinger, 2017, Genome Announcements.

Measurements of single nucleotide electronic states as nanoelectronic fingerprints for identification of DNA nucleobases, their protonated and unprotonated states, isomers, and tautomers.

P. Nagpal, A. Chatterjee, J. C. Ribot, 2015, The journal of physical chemistry. B.

Conformational Smear Characterization and Binning of Single-Molecule Conductance Measurements for Enhanced Molecular Recognition.

Lee E. Korshoj, P. Nagpal, A. Chatterjee, 2017, Journal of the American Chemical Society.

Convergent transcription confers a bistable switch in Enterococcus faecalis conjugation

D. Ramkrishna, Y. Kaznessis, C. Shu, 2011, Proceedings of the National Academy of Sciences.