Ao Chen

发表

The first chromosome‐level genome for a marine mammal as a resource to study ecology and evolution

Huanming Yang, Jian Wang, K. Kristiansen, 2019, Molecular ecology resources.

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

A. Alexeev, R. Drmanac, Yuxiang Li, 2016, Clinical Epigenetics.

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly

Jian Wang, Xun Xu, Fei Fan, 2019, Genome research.

Ou Wang A novel co-barcoding method for whole genome sequencing , haplotyping and scaffolding

Fan, Yang, Han K. Lam, 2018 .

DNB-Based On-Chip Motif Finding (DocMF): a High-Throughput Method to Profile Different Types of Protein-DNA Interactions

Yuan Jiang, Wenwei Zhang, Dengwei Zhang, 2019, bioRxiv.

DNB-based on-chip motif finding: A high-throughput method to profile different types of protein-DNA interactions

Yuan Jiang, Wenwei Zhang, Xun Xu, 2020, Science Advances.

A simple bead-based method for generating cost-effective co-barcoded sequence reads

Xun Xu, Fei Fan, Dan Chen, 2018, Protocol Exchange.

Systematical Engineering of Synthetic Yeast for Enhanced Production of Lycopene

Ao Chen, T. Chiu, Yong Wang, 2021, Bioengineering.

Large field of view-spatially resolved transcriptomics at nanoscale resolution

Huanming Yang, Jian Wang, Wenwei Zhang, 2021 .

Single‐Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma

Junhua Li, Huanming Yang, Di Wu, 2022, bioRxiv.

Single‐Nucleus RNA Sequencing and Spatial Transcriptomics Reveal the Immunological Microenvironment of Cervical Squamous Cell Carcinoma

Junhua Li, Huanming Yang, Xin Jin, 2022, bioRxiv.

An ATAC-seq atlas of chromatin accessibility in mouse tissues

B. Peters, Wenwei Zhang, Xiuqing Zhang, 2019, Scientific Data.

Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays

Huanming Yang, Jian Wang, Wenwei Zhang, 2021, Cell.

Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis

Yuxiang Li, Guangyi Fan, Shiping Liu, 2021, bioRxiv.

Unsupervised spatially embedded deep representation of spatial transcriptomics

Kok Siong Ang, Hong Kai Lee, H. Fu, 2021, bioRxiv.

Global Spatial Transcriptome of Macaque Brain at Single-Cell Resolution

Qi Zhang, Huanming Yang, Huatai Xu, 2022, bioRxiv.

Genome Sequencing Explores Complexity of Chromosomal Abnormalities in Recurrent Miscarriage.

S. Cheung, Yuan Jiang, Huanming Yang, 2019, American journal of human genetics.

Single-cell regulatory landscape and disease vulnerability map of adult Macaque cortex

Huanming Yang, Hongkui Zeng, Bosiljka Tasic, 2020 .

3′ Branch ligation: a novel method to ligate non-complementary DNA to recessed or internal 3′OH ends in DNA or RNA

B. Peters, A. Alexeev, Yuan Jiang, 2018, bioRxiv.

Efficient long single molecule sequencing for cost effective and accurate sequencing, haplotyping, and de novo assembly

Han K. Lam, Rebecca Yu Zhang, B. Peters, 2018, bioRxiv.

3’ Branch Ligation: A Novel Method to Ligate Non-Complementary DNA to Recessed or Internal 3’OH Ends in DNA or RNA

Ou Wang, Ao Chen, Wenwei Zhang, 2018, bioRxiv.

Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly

Xun Xu, Fei Fan, Yuliang Dong, 2018 .

High-resolution single-molecule long-fragment rRNA gene amplicon sequencing for uncultured bacterial and fungal communities

B. Peters, R. Drmanac, K. Kristiansen, 2021, bioRxiv.

High-resolution spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae

Yuxiang Li, Kai Han, Haorong Lu, 2021, bioRxiv.

Efficient COI barcoding using high throughput single-end 400 bp sequencing

A. Zhang, D. Bourne, Shangjin Tan, 2020, BMC genomics.

Advanced Whole Genome Sequencing Using an Entirely PCR-free Massively Parallel Sequencing Workflow

Zhe Lin, Jing Zhao, Yinlong Xie, 2019, bioRxiv.

CoolMPS™: Advanced massively parallel sequencing using antibodies specific to each natural nucleobase

Linsu Chen, R. Drmanac, Jian Wang, 2020, bioRxiv.

Title : Large field of view-spatially resolved transcriptomics at nanoscale resolution Short title : DNA nanoball stereo-sequencing

Jiang, Yiwei, Yujia, 2022 .

StereoCell enables high accuracy single cell segmentation for spatial transcriptomic dataset

Min Xie, Yuxiang Li, Yinqi Bai, 2023, bioRxiv.

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

A. Alexeev, R. Drmanac, Yuxiang Li, 2016, Clinical Epigenetics.

Spatiotemporal transcriptome at single-cell resolution reveals key radial glial cell population in axolotl telencephalon development and regeneration

Huanming Yang, Jian Wang, Xiaojie Qiu, 2021 .

Single-cell Stereo-seq enables cell type-specific spatial transcriptome characterization in Arabidopsis leaves

Huanming Yang, Jing Wang, Yuxiang Li, 2021, bioRxiv.

Spatiotemporal Omics-Refining the landscape of precision medicine

I. Amit, Ao Chen, Jianhua Yin, 2022, Life Medicine.

Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform

Yuan Jiang, J. Liu, R. Drmanac, 2018, bioRxiv.

Reliable multiplex sequencing with rare index mis-assignment on DNB-based NGS platform

Jian Wang, Xun Xu, Hui Jiang, 2018, BMC Genomics.

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

Zhifeng Wang, Xun Xu, Tao Wu, 2019, bioRxiv.

StereoCell enables highly accurate single-cell segmentation for spatial transcriptomics

Min Xie, Yuxiang Li, Yinqi Bai, 2023, bioRxiv.

Novel target capture DNA library preparation method using CircLigase-mediated hook ligation.

Xiuqing Zhang, Jiang Yuan, Ao Chen, 2020, New biotechnology.

Access COI barcode efficiently using high throughput Single-End 400 bp sequencing

D. Bourne, Shangjin Tan, Ao Chen, 2018, bioRxiv.

High-resolution single-molecule long-fragment rRNA gene amplicon sequencing of bacterial and eukaryotic microbial communities.

B. Peters, R. Drmanac, Wenwei Zhang, 2023, Cell Reports Methods.