Junsu Ko

发表

Minke whale genome and aquatic adaptation in cetaceans

Yun Sung Cho, C. P. Hong, Jun Wang, 2013, Nature Genetics.

A-Prot: protein structure modeling using MSA transformer

Juyong Lee, Junsu Ko, Yiyu Hong, 2021, bioRxiv.

Blind prediction of interfacial water positions in CAPRI

Kengo Kinoshita, Haruki Nakamura, Xiaoqin Zou, 2014, Proteins.

SARS-CoV-2 Infection of Microglia Elicits Proinflammatory Activation and Apoptotic Cell Death

Jaemyun Lyu, June-Yong Lee, Junsu Ko, 2022, Microbiology spectrum.

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures

Yun Sung Cho, Jessica A. Weber, S. O’Brien, 2015, Genome Biology.

Protein Motif Extraction via Feature Interval Selection 1 )

I. Sohn, D. Hong, Changha Hwang, 2006 .

Substructure-based neural machine translation for retrosynthetic prediction

Juyong Lee, Junsu Ko, U. Ucak, 2020, Journal of Cheminformatics.

TaF: a web platform for taxonomic profile-based fungal gene prediction

C. P. Hong, Yong Ju Ahn, C. Hong, 2018, Genes & Genomics.

Long-read transcriptome data for improved gene prediction in Lentinula edodes

C. P. Hong, Yong Ju Ahn, C. Hong, 2017, Data in brief.

Substructure-based neural machine translation for retrosynthetic prediction

Juyong Lee, Junsu Ko, Taek Kang, 2020, Journal of Cheminformatics.

Retrosynthetic reaction pathway prediction through neural machine translation of atomic environments

Juyong Lee, Junsu Ko, U. V. Ucak, 2022, Nature Communications.

The tiger genome and comparative analysis with lion and snow leopard genomes

Yun Sung Cho, Jun Wang, S. O’Brien, 2013, Nature Communications.

S-Pred: protein structural property prediction using MSA transformer

Juyong Lee, Woong-Hee Shin, Junsu Ko, 2022, Scientific Reports.

N4-phenylquinazoline-4,6-diamine as a tunable fluorescent scaffold for the development of fluorescent probes

H. Yoo, Juyong Lee, Jongmin Park, 2022, Dyes and Pigments.

Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan

Yun Sung Cho, Seungwoo Hwang, A. Manica, 2015, BMC Genomics.

GalaxyWEB server for protein structure prediction and refinement

Chaok Seok, Hahnbeom Park, Lim Heo, 2012, Nucleic Acids Res..

LigDockCSA: Protein–ligand docking using conformational space annealing

Jooyoung Lee, Chaok Seok, Juyong Lee, 2011, J. Comput. Chem..

TaF: a web platform for taxonomic profile-based fungal gene prediction

C. P. Hong, Yong Ju Ahn, Junsu Ko, 2018, Genes & Genomics.

Identifying novel NF-kB-regulated immune genes in the human genome using a Discrete Kernel Structured Support Vector Machine

Insuk Sohn, Sujong Kim, Jae Won Lee, 2017, Model Assisted Statistics and Applications.

Genome-wide analysis of DNA methylation patterns in horse

C. P. Hong, J. Bhak, Tae-Hyung Kim, 2014, BMC Genomics.

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq

Seungwoo Hwang, J. Bhak, Tae-Hyung Kim, 2012, BMC Genomics.

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Genome-Wide Analysis of DNA Methylation before-and after Exercise in the Thoroughbred Horse with MeDIP-Seq

C. P. Hong, J. Bhak, C. Hong, 2015, Molecules and cells.

Deep learning method for comet segmentation and comet assay image analysis

Insuk Sohn, Donghwan Lee, Ji-Young Lee, 2020, Scientific Reports.

A protein domain interaction interface database: InterPare

Deok-Soo Kim, Sungsam Gong, Insoo Jang, 2005, BMC Bioinformatics.

Refinement of protein termini in template‐based modeling using conformational space annealing

Keehyoung Joo, Jooyoung Lee, Chaok Seok, 2011, Proteins.

The FALC-Loop web server for protein loop modeling

Chaok Seok, Evangelos A. Coutsias, Julian Lee, 2011, Nucleic Acids Res..

AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks

Juyong Lee, Woong-Hee Shin, Junsu Ko, 2020, International journal of molecular sciences.

GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity

Hasup Lee, Chaok Seok, Hahnbeom Park, 2013, Bioinform..

Zika Virus Infection Induces Interleukin-1β-Mediated Inflammatory Responses by Macrophages in the Brain of an Adult Mouse Model

Jaemyun Lyu, Junsu Ko, K. Ku, 2023, Journal of virology.

GalaxyTBM: template-based modeling by building a reliable core and refining unreliable local regions

Chaok Seok, Hahnbeom Park, Junsu Ko, 2012, BMC Bioinformatics.

RNA seq- and DEG-based comparison of developmental toxicity in fish embryos of two species exposed to Iranian heavy crude oil.

Junsu Ko, W. Shim, U. Yim, 2017, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

Comparative transcriptome analysis identified candidate genes involved in mycelium browning in Lentinula edodes

C. P. Hong, Yong Ju Ahn, Junsu Ko, 2019, BMC Genomics.

RetroTRAE: retrosynthetic prediction with Transformer RetroTRAE: retrosynthetic translation of 1 atomic environments with Transformer

Juyong Lee, Junsu Ko, U. V. Ucak, 2022 .

RetroTRAE: retrosynthetic prediction with Transformer Retrosynthetic reaction pathway prediction through neural 1 machine translation of atomic environments

Juyong Lee, Junsu Ko, U. V. Ucak, 2022 .

Deep Learning Methods for Lung Cancer Segmentation in Whole-Slide Histopathology Images—The ACDC@LungHP Challenge 2019

Xichao Teng, Xiangjun Feng, Tao Tan, 2020, IEEE Journal of Biomedical and Health Informatics.

Can AlphaFold2 predict protein-peptide complex structures accurately?

Juyong Lee, Junsu Ko, 2021, bioRxiv.

Protein Motif Extraction via Feature Interval Selection

I. Sohn, D. Hong, Changha Hwang, 2006 .

Whole genome sequencing of an ethnic Pathan (Pakhtun) from the north-west of Pakistan

Jong Bhak, Yun Sung Cho, Achal Rastogi, 2015, BMC Genomics.

Intercellular cross-talk through lineage-specific gap junction of cancer-associated fibroblasts related to stromal fibrosis and prognosis

I. Sohn, Dakeun Lee, C. Sung, 2023, Scientific reports.

Comparative transcriptome analysis identified candidate genes involved in mycelium browning in Lentinula edodes

Yong Ju Ahn, C. Hong, Junsu Ko, 2019, BMC Genomics.

Blind prediction of interfacial water positions in CAPRI

Julie C. Mitchell, Jeffrey J. Gray, H. Wolfson, 2014, Proteins.

Can AlphaFold2 predict protein-peptide complex structures accurately?

Juyong Lee, Junsu Ko, 2021, bioRxiv.