Gavin Ha

发表

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

Sohrab P. Shah, Ali Bashashati, Ryan D. Morin, 2012, Bioinform..

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data

Süleyman Cenk Sahinalp, Malachi Griffith, Sohrab P. Shah, 2011, PLoS Comput. Biol..

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors

Kevin P. Murphy, Sohrab P. Shah, Ryan D. Morin, 2010, Bioinform..

OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web pdf

Benjamin M. Good, Mark D. Wilkinson, Gavin Ha, 2015, ArXiv.

Association of Cell-Free DNA Tumor Fraction and Somatic Copy Number Alterations With Survival in Metastatic Triple-Negative Breast Cancer.

Nikhil Wagle, Gad Getz, J Christopher Love, 2018, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma.

Andrew Dunford, Kyoung-Mee Kim, Masayuki Watanabe, 2018, Cancer discovery.

Abstract 1028: Patient-derived xenografts undergo mouse-specific tumor evolution

Todd R. Golub, Rameen Beroukhim, Gavin Ha, 2018, Tumor Biology.

Patient-derived xenografts undergo murine-specific tumor evolution

Rameen Beroukhim, Gavin Ha, Juliann Shih, 2017, Nature Genetics.

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Clement Adebamowo, Ritika Kundra, Steven J. M. Jones, 2018, Cell reports.

Inferring structural variant cancer cell fraction

Roland Eils, Yuan Ji, Jan Schröder, 2020, Nature Communications.

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Sohrab P. Shah, Ali Bashashati, Marco A. Marra, 2014, Genome research.

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

Sohrab P. Shah, Ali Bashashati, Hui Xue, 2014, Nature.

Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor.

Aviad Tsherniak, Gavin Ha, William C Hahn, 2017, Cancer discovery.

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

Ali Bashashati, Thomas Zeng, Stephen Yip, 2013, The Journal of pathology.

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer

Ali Bashashati, Alexandre Bouchard-Côté, Richard A. Moore, 2016, Nature Genetics.

Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors

Nikhil Wagle, Todd R. Golub, Huiming Ding, 2017, Nature Communications.

Patient-derived xenografts undergo murine-specific tumor evolution

Todd R. Golub, Rameen Beroukhim, Gavin Ha, 2017 .

Genomic consequences of aberrant DNA repair mechanisms stratify ovarian cancer histotypes

Ali Bashashati, Richard A. Moore, Gavin Ha, 2017, Nature Genetics.