E. Carpenter

发表

Phylotranscriptomic analysis of the origin and early diversification of land plants

Saravanaraj N. Ayyampalayam, J. G. Burleigh, Michael S. Barker, 2014, Proceedings of the National Academy of Sciences.

Independent Optical Excitation of Distinct Neural Populations

Stefan R. Pulver, Nathan C. Klapoetke, Tania K Morimoto, 2014, Nature Methods.

One thousand plant transcriptomes and the phylogenomics of green plants

Xun Xu, Fan Yang, Ivo Grosse, 2019, Nature.

A genome triplication associated with early diversification of the core eudicots

Yeting Zhang, Michael R McKain, Pamela S Soltis, 2012, Genome Biology.

Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

Yinlong Xie, Gane Ka-Shu Wong, Douglas E. Soltis, 2015, Molecular biology and evolution.

Gamma-Retrovirus Integration Marks Cell Type-Specific Cancer Genes: A Novel Profiling Tool in Cancer Genomics

G. Wong, E. Cameron, J. Neil, 2016, PloS one.

Breakthrough Technologies Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes 1 [ OPEN ]

Monika S. Doblin, A. Bacic, G. Wong, 2017 .

Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes1[OPEN]

Monika S. Doblin, A. Bacic, G. Wong, 2017, Plant Physiology.

Addendum: Independent optical excitation of distinct neural populations

Edward S Boyden, Stefan R. Pulver, Yinlong Xie, 2014, Nature Methods.

Functional and topological diversity of LOV domain photoreceptors

Edward S Boyden, Gane Ka-Shu Wong, Eric J Carpenter, 2016, Proceedings of the National Academy of Sciences.

Isolation of a Human Betaretrovirus from Patients with Primary Biliary Cholangitis

G. Wong, Guangzhi Zhang, Weiwei Wang, 2022, Viruses.

Tubulin electrostatics and isotype specific drug binding

J. Tuszynski, J. Torin Huzil, T. Luchko, 2008 .

Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology

C. N. Stewart, G. Wong, D. Soltis, 2016, BMC Biotechnology.

Exploration of the activation pathway of Δα-Chymotrypsin with molecular dynamics simulations and correlation with kinetic experiments

J. Tuszynski, P. Krüger, Y. Engelborghs, 2008, European Biophysics Journal.

Modeling the Yew Tree Tubulin and a Comparison of its Interaction with Paclitaxel to Human Tubulin

Jonathan Y. Mane, G. Wong, Yong Zhang, 2012, Pharmaceutical Research.

Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns

Dennis W. Stevenson, Anders Larsson, Jun Wang, 2014, Proceedings of the National Academy of Sciences.

Model of ionic currents through microtubule nanopores and the lumen.

J. Tuszynski, S. Noskov, E. Carpenter, 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.

Molecular dynamics simulations of tubulin structure and calculations of electrostatic properties of microtubules

Jack A. Tuszynski, E. J. Carpenter, E. Crawford, 2005, Math. Comput. Model..

Occurrence, structure, and evolution of nitric oxide synthase–like proteins in the plant kingdom

G. Wong, M. Melkonian, D. Wendehenne, 2016, Science Signaling.

Data access for the 1,000 Plants (1KP) project

Xiao Sun, Ram Samudrala, Ling-Hong Hung, 2014, GigaScience.

Tubulin Isotypes And Their Role In Microtubule Dynamic Instability, Implications For Modeling And Rational Design Of Inhibitors

J. Tuszynski, E. Carpenter, Torin Huzil, 2008 .

The evolution of the structure of tubulin and its potential consequences for the role and function of microtubules in cells and embryos.

J. Tuszynski, T. Luchko, E. Carpenter, 2006, The International journal of developmental biology.

Impact of sequencing depth and technology on de novo RNA-Seq assembly

R. Drmanac, G. Wong, Xinming Liang, 2019, BMC genomics.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

C. N. Stewart, Blake L. Joyce, G. Wong, 2015, Molecular biology and evolution.

Cation and Anion Channelrhodopsins: Sequence Motifs and Taxonomic Distribution

J. Spudich, M. Melkonian, E. Govorunova, 2021, bioRxiv.

Identification of Hepatotropic Viruses from Plasma Using Deep Sequencing: A Next Generation Diagnostic Tool

G. Wong, Yong Zhang, J. Jovel, 2013, PloS one.

Evaluating Methods for Isolating Total RNA and Predicting the Success of Sequencing Phylogenetically Diverse Plant Transcriptomes

James Leebens-Mack, Claude W. dePamphilis, C. N. Stewart, 2012, PloS one.

Probabilistic analysis of the frequencies of amino acid pairs within characterized protein sequences

Jack A. Tuszynski, Shiyi Shen, Jishou Ruan, 2006, Physica A: Statistical Mechanics and its Applications.

Metagenomic Analysis of Microbiome in Colon Tissue from Subjects with Inflammatory Bowel Diseases Reveals Interplay of Viruses and Bacteria

Yong Zhang, J. Jovel, M. Rahbari, 2015, Inflammatory bowel diseases.

Modeling the Yew Tree Tubulin and a Comparison of its Interaction with Paclitaxel to Human Tubulin

Jonathan Y. Mane, G. Wong, J. Tuszynski, 2012, Pharmaceutical Research.

The Evolution of HD2 Proteins in Green Plants.

G. Wong, D. Soltis, J. Leebens-Mack, 2016, Trends in plant science.

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)

Saravanaraj N. Ayyampalayam, Michael S. Barker, Matthew A. Gitzendanner, 2019, GigaScience.

Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation

G. Wong, S. Elahi, J. Jovel, 2022, Frontiers in Microbiology.

Analytical expressions for energies, degeneracies and critical temperatures of the 2D square and 3D cubic Ising models

J. Tuszynski, E. Carpenter, J. Dixon, 2005 .

Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining

G. Wong, D. Soltis, E. Carpenter, 2015, Journal of proteome research.

Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants.

G. Wong, H. Greger, E. Carpenter, 2013, Biopolymers.

Homology modeling of tubulin: influence predictions for microtubule’s biophysical properties

J. Tuszynski, E. Carpenter, R. Luduena, 2006, European Biophysics Journal.

The Origin and Evolution of the Plant Cell Surface: Algal Integrin-Associated Proteins and a New Family of Integrin-Like Cytoskeleton-ECM Linker Proteins

G. Wong, Yong Zhang, M. Melkonian, 2015, Genome biology and evolution.

Molecular dynamics calculations of the electrostatic properties of tubulin and their consequences for microtubules

Jack A. Tuszynski, E. J. Carpenter, E. Crawford, 2003, Proceedings International Conference on MEMS, NANO and Smart Systems.

Results of Molecular Dynamics Computations of the Structural and Electrostatic Properties of Tubulin and Their Consequences for Microtubules

J. Tuszynski, E. Crawford, T. Luchko, 2004 .

Frequent proviral integration of the human betaretrovirus in biliary epithelium of patients with autoimmune and idiopathic liver disease

G. Wong, Y. Zhang, A. Mason, 2014, Alimentary pharmacology & therapeutics.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Blake L. Joyce, G. Wong, Yong Zhang, 2015, Molecular biology and evolution.

Impact of sequencing depth and technology on de novo RNA-Seq assembly

R. Drmanac, G. Wong, Xinming Liang, 2019, BMC Genomics.

Non-Gaussian statistics of the vibrational fluctuations of myoglobin and the thermal fluctuations of myoglobin hydration

Jack A. Tuszynski, Michel Peyrard, Tyler Luchko, 2004, SPIE International Symposium on Fluctuations and Noise.

Non-Gaussian statistics of the vibrational fluctuations of myoglobin

Y. Engelborghs, E. Carpenter, J. Dixon, 2004, European Biophysics Journal.