J. Browne

发表

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

D. A. Magee, K. Hokamp, K. Meade, 2015, Front. Immunol..

Molecular aspects of mucin biosynthesis and mucus formation in the bovine cervix during the periestrous period.

B. Loftus, J. Irwin, A. Baird, 2012, Physiological genomics.

Anhydrobiosis: Plant desiccation gene found in a nematode

A. Tunnacliffe, J. Browne, A. Burnell, 2002, Nature.

Molecular Anhydrobiology: Identifying Molecules Implicated in Invertebrate Anhydrobiosis1

A. Tunnacliffe, J. Browne, A. Burnell, 2005, Integrative and comparative biology.

Dehydration-Specific Induction of Hydrophilic Protein Genes in the Anhydrobiotic Nematode Aphelenchus avenae

A. Tunnacliffe, J. Browne, A. Burnell, 2004, Eukaryotic Cell.

Fasciola hepatica Infection in Cattle: Analyzing Responses of Peripheral Blood Mononuclear Cells (PBMC) Using a Transcriptomics Approach

D. MacHugh, G. Farries, C. N. Correia, 2019, Front. Immunol..

Mycobacterium riyadhense clinical isolates provide insights into ancestry and adaptive evolution in tuberculosis

A. Pain, S. Gordon, Qingtian Guan, 2019 .

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

D. MacHugh, B. Loftus, J. Browne, 2015, BMC Genomics.

RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus)

D. A. Magee, S. Gordon, D. MacHugh, 2018, bioRxiv.

Moderate and high intensity sprint exercise induce differential responses in COX4I2 and PDK4 gene expression in Thoroughbred horse skeletal muscle.

E. Hill, D. MacHugh, B. A. McGivney, 2010, Equine veterinary journal. Supplement.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

D. A. Magee, K. Hokamp, S. Gordon, 2013, BMC Genomics.

Transcriptomic Study on Ovine Immune Responses to Fasciola hepatica Infection

Yan Fu, P. McGettigan, J. Browne, 2016, PLoS neglected tropical diseases.

Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria

S. Gordon, D. MacHugh, C. N. Correia, 2020, bioRxiv.

Innate cytokine profiling of bovine alveolar macrophages reveals commonalities and divergence in the response to Mycobacterium bovis and Mycobacterium tuberculosis infection.

D. A. Magee, C. Healy, S. Gordon, 2014, Tuberculosis.

Comparative ‘omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

Olga T. Schubert, D. A. Magee, R. Aebersold, 2017, bioRxiv.

Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training

E. Hill, D. MacHugh, B. Loftus, 2010, BMC Genomics.

Global Gene Expression and Systems Biology Analysis of Bovine Monocyte-Derived Macrophages in Response to In Vitro Challenge with Mycobacterium bovis

D. A. Magee, K. Hokamp, D. Lynn, 2012, PloS one.

Circadian regulation of locomotor activity and skeletal muscle gene expression in the horse.

E. Hill, B. A. McGivney, L. Katz, 2010, Journal of applied physiology.

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

D. A. Magee, K. Hokamp, S. Gordon, 2014, Front. Immunol..

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis

D. A. Magee, K. Hokamp, E. Gormley, 2012, Veterinary Research.

Identity of rumen fluke in deer

J. Browne, G. Mulcahy, A. Zintl, 2014, Parasitology Research.

55. The effect of daytime blue-enriched polychromatic light and nighttime red light on peripheral circadian clock gene rhythmicity in horses

J. Sheridan, J. Browne, B. A. Murphy, 2021 .

The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae)

D. Fitzpatrick, J. Browne, A. Burnell, 2005, Journal of Experimental Biology.

Expression Quantitative Trait Loci in Equine Skeletal Muscle Reveals Heritable Variation in Metabolism and the Training Responsive Transcriptome

E. Hill, D. MacHugh, G. Farries, 2019, Front. Genet..

Highly Efficient F, Cu doped TiO2 anti-bacterial visible light active photocatalytic coatings to combat hospital-acquired infections

Brid Quilty, Steven J. Hinder, Suresh C. Pillai, 2016, Scientific Reports.

Dehydration-induced tps gene transcripts from an anhydrobiotic nematode contain novel spliced leaders and encode atypical GT-20 family proteins.

A. Tunnacliffe, J. Browne, A. Burnell, 2005, Biochimie.

Evaluation of microRNA expression in plasma and skeletal muscle of thoroughbred racehorses in training

E. Hill, B. A. McGivney, L. Katz, 2017, BMC Veterinary Research.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Amir K. Foroushani, D. A. Magee, D. Lynn, 2013, Veterinary immunology and immunopathology.

Transition from Natively Unfolded to Folded State Induced by Desiccation in an Anhydrobiotic Nematode Protein*

J. Zurdo, A. Tunnacliffe, J. Browne, 2003, The Journal of Biological Chemistry.

Gene induction by desiccation stress in the entomopathogenic nematode Steinernema carpocapsae reveals parallels with drought tolerance mechanisms in plants.

J. Browne, A. Burnell, T. Tyson, 2007, International journal for parasitology.

Transcriptomic Analysis of Ovine Hepatic Lymph Node Following Fasciola hepatica Infection – Inhibition of NK Cell and IgE-Mediated Signaling

D. MacHugh, V. Molina-Hernández, J. Browne, 2021, Frontiers in Immunology.

Timing of Transcriptomic Peripheral Blood Mononuclear Cell Responses of Sheep to Fasciola hepatica Infection Differs From Those of Cattle, Reflecting Different Disease Phenotypes

D. MacHugh, V. Molina-Hernández, J. Browne, 2021, bioRxiv.

Identity of rumen fluke in deer

J. Browne, G. Mulcahy, A. Zintl, 2014, Parasitology Research.

The need for transparency and good practices in the qPCR literature

Erik Willems, Jo Vandesompele, Jim Huggett, 2013, Nature Methods.

Evidence for local and international spread of Mycobacterium avium subspecies paratuberculosis through whole genome sequencing of isolates from the island of Ireland.

S. Gordon, D. Farrell, R. Skuce, 2022, Veterinary microbiology.

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

Olga T. Schubert, D. A. Magee, R. Aebersold, 2017, bioRxiv.

RNA-Seq Transcriptome Analysis of Peripheral Blood From Cattle Infected With Mycobacterium bovis Across an Experimental Time Course

D. A. Magee, S. Gordon, E. Gormley, 2021, Frontiers in Veterinary Science.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

D. A. Magee, D. Lynn, D. Bradley, 2015, Tuberculosis.

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

D. A. Magee, K. Hokamp, S. Gordon, 2014, Front. Immunol..

MicroRNA pro fi ling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome traf fi cking

D. A. Magee, D. Lynn, D. Bradley, 2014 .

Novel primers for the amplification of nuclear DNA introns in the entomopathogenic nematode Heterorhabditis bacteriophora and their cross‐amplification in seven other Heterorhabditis species

D. Fitzpatrick, J. T. Jones, J. Browne, 2009, Molecular ecology resources.

Alveolar Macrophage Chromatin Is Modified to Orchestrate Host Response to Mycobacterium bovis Infection

S. Gordon, D. MacHugh, D. Vernimmen, 2020, Frontiers in Genetics.

Alveolar macrophage chromatin is uniquely modified to orchestrate host response to Mycobacterium bovis infection

S. Gordon, D. MacHugh, D. Vernimmen, 2019, bioRxiv.

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

D. MacHugh, B. Loftus, A. Aulicino, 2015, BMC Genomics.

Network Analysis of the Systemic Response to Fasciola hepatica Infection in Sheep Reveals Changes in Fibrosis, Apoptosis, Toll-Like Receptors 3/4, and B Cell Function

Yan Fu, J. Browne, K. Killick, 2017, Front. Immunol..

Insights into the ancestry evolution of the Mycobacterium tuberculosis complex from analysis of Mycobacterium riyadhense

A. Pain, S. Gordon, C. Demangel, 2021, NAR genomics and bioinformatics.

Insights into ancestry and adaptive evolution of the Mycobacterium tuberculosis complex from analysis of the emerging pathogen Mycobacterium riyadhense

A. Pain, S. Gordon, Qingtian Guan, 2019, bioRxiv.

Obese IL-1 receptor-I-deficient (IL-1RI−/−) mice are protected against diet-induced insulin resistance via a down-regulation of inflammation and oxidative stress in adipose tissue: a proteomics investigation

H. Roche, G. Horgan, J. Browne, 2008, Proceedings of the Nutrition Society.

Network analysis of adipose tissue gene expression highlights altered metabolic and regulatory transcriptomic activity in high-fat-diet-fed IL-1RI knockout mice.

Melissa J. Morine, John A Browne, H. Roche, 2013, The Journal of nutritional biochemistry.

Exercise influences circadian gene expression in equine skeletal muscle.

A. Wagner, J. Browne, J. Elliott, 2014, Veterinary journal.

MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression and racetrack performance.

E. Hill, D. MacHugh, B. A. McGivney, 2012, Animal genetics.

Mycobacterial Infection of Precision-Cut Lung Slices Reveals Type 1 Interferon Pathway Is Locally Induced by Mycobacterium bovis but Not M. tuberculosis in a Cattle Breed

S. Gordon, A. Aseffa, D. Descamps, 2021, Frontiers in Veterinary Science.

Divergent mechanisms of cis9, trans11‐ and trans10, cis12‐conjugated linoleic acid affecting insulin resistance and inflammation in apolipoprotein E knockout mice: a proteomics approach

H. Roche, J. Arbonés-Mainar, G. Duncan, 2005, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Mycobacterial infection of precision cut lung slices reveals that the type 1 interferon pathway is locally induced by Mycobacterium bovis but not M. tuberculosis in different cattle breeds

S. Gordon, D. Descamps, J. Browne, 2021, bioRxiv.

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli

D. A. Magee, C. Healy, S. Gordon, 2015, Scientific Reports.

The TbD1 Locus Mediates a Hypoxia-Induced Copper Response in Mycobacterium bovis

S. Gordon, D. Farrell, J. Browne, 2022, Frontiers in Microbiology.

Variation in the Ovine Abomasal Lymph Node Transcriptome between Breeds Known to Differ in Resistance to the Gastrointestinal Nematode

A. Lohan, P. McGettigan, B. Markey, 2015, PloS one.

The anhydrobiotic potential and molecular phylogenetics of species and strains of Panagrolaimus (Nematoda, Panagrolaimidae)

D. Fitzpatrick, J. Browne, A. Burnell, 2005, Journal of Experimental Biology.

Time of day influences cytokine and clock gene response to immune stimulation in equine whole blood

J. Browne, B. A. Murphy, C. M. Blake, 2010 .

Attenuation of inflammation and cellular stress‐related pathways maintains insulin sensitivity in obese type I interleukin‐1 receptor knockout mice on a high‐fat diet

H. Roche, G. Horgan, K. Mills, 2009, Proteomics.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

D. A. Magee, K. Hokamp, S. Gordon, 2013, BMC Genomics.

Circadian regulation of locomotor activity and skeletal muscle gene expression in the horse.

E. Hill, L. Katz, J. Browne, 2010, Journal of applied physiology.