C. Otto

发表

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches

P. Stadler, M. Fasold, David Langenberger, 2021, bioRxiv.

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection

Andrea Tanzer, P. Stadler, J. Hackermüller, 2014, Genome Biology.

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data

Helene Kretzmer, Steve Hoffmann, Peter F Stadler, 2016, Genome research.

Chromosome‐level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

P. Stadler, D. Galbraith, Claude Becker, 2022, Plant biotechnology journal.

Evolution of the let-7 microRNA Family

Peter F. Stadler, Jana Hertel, Sebastian Bartschat, 2012, RNA biology.

A first glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus.

P. Stadler, J. Hackermüller, H. Pörtner, 2014, Journal of experimental zoology. Part B, Molecular and developmental evolution.

DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control

Roland Eils, Paul Flicek, Helene Kretzmer, 2015, Nature Genetics.

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

Kristin Reiche, Jörg Hackermüller, Peter F Stadler, 2014, Genome Biology.

Lacking alignments? The next-generation sequencing mapper segemehl revisited

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2014, Bioinform..

P. Stadler, Jana Hertel, C. Otto, 2012 .

The mapping task and its various applications in next-generation sequencing

Christian Otto, C. Otto, 2014 .

Detection of differentially expressed segments in tiling array data

Kristin Reiche, Christian Otto, Jörg Hackermüller, 2012, Bioinform..

Fast and sensitive mapping of bisulfite-treated sequencing data

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2012, Bioinform..

Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis

Peter F. Stadler, David Langenberger, Adam Nunn, 2020, bioRxiv.

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

P. Stadler, J. Hackermüller, H. Pörtner, 2019, BMC Genomics.

Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species.

P. Stadler, J. Hackermüller, H. Pörtner, 2019, Comparative biochemistry and physiology. Part D, Genomics & proteomics.

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

Peter F. Stadler, Steve Hoffmann, Christian Otto, 2009, PLoS Comput. Biol..

EpiDiverse Toolkit: a pipeline suite for the analysis of bisulfite sequencing data in ecological plant epigenetics

P. Stadler, M. Fasold, N. Fernández-Pozo, 2021, NAR genomics and bioinformatics.

Chromosome-level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates

P. Stadler, D. Weigel, C. Lanz, 2021 .

Novel modes of RNA editing in mitochondria

G. Burger, C. Otto, M. Valach, 2016, Nucleic acids research.

Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods

P. Stadler, J. Hackermüller, H. Pörtner, 2019, BMC Genomics.

BAT: Bisulfite Analysis Toolkit

Helene Kretzmer, Christian Otto, Steve Hoffmann, 2017, F1000Research.

Fast local fragment chaining using sum-of-pair gap costs

Peter F. Stadler, Jan Gorodkin, Steve Hoffmann, 2011, Algorithms for Molecular Biology.

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches

P. Stadler, M. Fasold, David Langenberger, 2021, BMC Genomics.

Cell cycle, oncogenic and tumor suppressor pathways regulate numerous long and macro non-protein-coding RNAs

P. Stadler, J. Hackermüller, Anne Nitsche, 2014, Genome Biology.