Tieming Ji

发表

Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome

Sanzhen Liu, Cheng-Ting Yeh, P. Schnable, 2009, PLoS genetics.

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content

Patrick S. Schnable, Dan Nettleton, Nathan M. Springer, 2009, PLoS genetics.

Hyper Nonlocal Priors for Variable Selection in Generalized Linear Models

Marco A. R. Ferreira, Tieming Ji, Hongping Wu, 2018, Sankhya A.

Modeling the next generation sequencing read count data for DNA copy number variant study

Tieming Ji, Jie Chen, 2015, Statistical applications in genetics and molecular biology.

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

C. Elsik, Tieming Ji, Zi-Xia Zhao, 2019, Scientific Reports.

Maternal Hyperleptinemia Is Associated with Male Offspring’s Altered Vascular Function and Structure in Mice

C. Reyes-Aldasoro, Tieming Ji, Omonseigho O. Talton, 2016, PloS one.

Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome

J. Kalish, Tieming Ji, M. Bakhtiarizadeh, 2019, Epigenetics.

Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.

G. Stacey, M. Hossain, J. Zhai, 2015, The New phytologist.

Pharmacologic Reprogramming Designed to Induce a Warburg Effect in Porcine Fetal Fibroblasts Alters Gene Expression and Quantities of Metabolites from Conditioned Media Without Increased Cell Proliferation

R. Prather, Jonathan A Green, S. L. Murphy, 2018, Cellular reprogramming.

Borrowing information across genes and experiments for improved error variance estimation in microarray data analysis.

D. Nettleton, P. Liu, Tieming Ji, 2012, Statistical applications in genetics and molecular biology.

Effect of aneuploidy of a non‐essential chromosome on gene expression in maize

J. Birchler, Jianlin Cheng, Jie Hou, 2022, The Plant journal : for cell and molecular biology.

Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance.

Jianlin Cheng, J. Birchler, Jie Hou, 2020, Journal of genetics and genomics = Yi chuan xue bao.

BICOSS: Bayesian iterative conditional stochastic search for GWAS

Marco A. R. Ferreira, Tieming Ji, Jacob Williams, 2022, BMC Bioinformatics.

The effects of biological aging on global DNA methylation, histone modification, and epigenetic modifiers in the mouse germinal vesicle stage oocyte

Tieming Ji, R. M. Rivera, K. Marshall, 2018, Animal reproduction.

Effects of the use of assisted reproduction and high-caloric diet consumption on body weight and cardiovascular health of juvenile mouse offspring.

Tieming Ji, C. Foote, L. Martinez‐Lemus, 2013, Reproduction.

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

T. Joshi, Dong Xu, G. Stacey, 2016, Plant biotechnology journal.

Global misregulation of genes largely uncoupled to DNA methylome epimutations characterizes a congenital overgrowth syndrome

C. Elsik, Tieming Ji, D. Hagen, 2017, Scientific Reports.

A Bayesian hidden Markov model for detecting differentially methylated regions

Tieming Ji, Tieming Ji, 2019, Biometrics.

Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction

C. Elsik, Tieming Ji, D. Hagen, 2015, Proceedings of the National Academy of Sciences.

Statistical models for DNA copy number variation detection using read‐depth data from next generation sequencing experiments

Jie Chen, Tieming Ji, Tieming Ji, 2016 .

Conditions of embryo culture from days 5 to 7 of development alter the DNA methylome of the bovine fetus at day 86 of gestation

P. Hansen, Tieming Ji, M. Bakhtiarizadeh, 2019, Journal of Assisted Reproduction and Genetics.

Lean maternal hyperglycemia alters offspring lipid metabolism and susceptibility to diet-induced obesity in mice†.

Tieming Ji, Omonseigho O. Talton, L. Schulz, 2019, Biology of reproduction.

Genomic imbalance determines positive and negative modulation of gene expression in diploid maize

Jianlin Cheng, J. Birchler, Jie Hou, 2021, The Plant cell.

Predominantly inverse modulation of gene expression in genomically unbalanced disomic haploid maize

Jianlin Cheng, J. Birchler, Jie Hou, 2021, The Plant cell.

Global impacts of chromosomal imbalance on gene expression in Arabidopsis and other taxa

Jianlin Cheng, J. Birchler, M. Matzke, 2018, Proceedings of the National Academy of Sciences.

Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing

C. Elsik, P. Hansen, Tieming Ji, 2016, Epigenetics.

Sequence of the supernumerary B chromosome of maize provides insight into its drive mechanism and evolution

Jing Zhang, Jianlin Cheng, F. Han, 2021, Proceedings of the National Academy of Sciences.

Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model

Marco A. R. Ferreira, J. Xie, Tieming Ji, 2019, BMC Bioinformatics.

Gene expression of zebrafish embryos exposed to titanium dioxide nanoparticles and hydroxylated fullerenes.

Tieming Ji, B. Jovanović, D. Palić, 2011, Ecotoxicology and environmental safety.

The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants.

Jianlin Cheng, R. Veitia, J. Birchler, 2020, Methods in molecular biology.

Porcine Fetal-Derived Fibroblasts Alter Gene Expression and Mitochondria to Compensate for Hypoxic Stress During Culture

R. Prather, Jonathan A Green, S. L. Murphy, 2018, Cellular reprogramming.

Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously

Chenchen Ma, Tieming Ji, Tieming Ji, 2018, BMC Bioinformatics.

Glutamine supplementation enhances development of in vitro-produced porcine embryos and increases leucine consumption from the medium†

L. Spate, R. Prather, Tieming Ji, 2018, Biology of Reproduction.

An empirical bayesian approach for testing gene expression fold change and its application in detecting global dosage effects

Zhaohui S. Qin, Z. Qin, J. Birchler, 2020, NAR genomics and bioinformatics.

What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment

Jilong Li, Jianlin Cheng, Jing Qiu, 2016, Statistical applications in genetics and molecular biology.

Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize

Jianlin Cheng, J. Birchler, Jie Hou, 2022, Nature Communications.

Impacts of Salmonella enteritidis infection on liver transcriptome in broilers

J. Abernathy, D. Coble, D. Fleming, 2012, Genesis.

Effects of the Use of Assisted Reproductive Technologies and an Obesogenic Environment on Resistance Artery Function and Diabetes Biomarkers in Mice Offspring

Tieming Ji, C. Foote, L. Martinez‐Lemus, 2014, PloS one.

Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population

C. Elsik, Tieming Ji, B. Hibbard, 2019, Scientific Reports.

Paternal Dominance of Trans-eQTL Influences Gene Expression Patterns in Maize Hybrids

P. Schnable, D. Nettleton, Yi Jia, 2009, Science.

Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome.

J. Kalish, Tieming Ji, M. Bakhtiarizadeh, 2019, Epigenetics.

Detecting differentially expressed genes for syndromes by considering change in mean and dispersion simultaneously

Tieming Ji, Chenchen Ma, 2018, BMC Bioinformatics.

Modeling allele-specific expression at the gene and SNP levels simultaneously by a Bayesian logistic mixed regression model

Jing Xie, Tieming Ji, Marco A. R. Ferreira, 2019, BMC Bioinformatics.

Genomic imbalance modulates transposable element expression in maize

J. Birchler, Jianlin Cheng, Jie Hou, 2022, Plant communications.

Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome

J. Kalish, Tieming Ji, M. Bakhtiarizadeh, 2019, Epigenetics.