Han Fang

发表

Scikit-ribo Enables Accura te Estimation and Robust Modeling of Translation Dynamics at Codon Resolution Graphical

M. Schatz, A. Siepel, G. Lyon, 2018 .

Scikit-ribo: Accurate estimation and robust modeling of translation dynamics at codon resolution

M. Schatz, A. Siepel, G. Lyon, 2017, bioRxiv.

Accurate detection of de novo and transmitted indels within exome-capture data using micro-assembly

M. Schatz, Yoon-ha Lee, M. Wigler, 2014, Nature Methods.

Reducing INDEL calling errors in whole genome and exome sequencing data

M. Schatz, I. Iossifov, G. Lyon, 2014, Genome Medicine.

Indel variant analysis of short-read sequencing data with Scalpel

Ewa A. Bergmann, M. Schatz, Yoon-ha Lee, 2015, Nature Protocols.

Integrating precision medicine in the study and clinical treatment of a severely mentally ill person

Gerald A. Higgins, M. G. Reese, K. Eilbeck, 2013, PeerJ.

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

John D McPherson, Elizabeth Tseng, Sara Goodwin, 2017, bioRxiv.

GenomeScope: Fast reference-free genome profiling from short reads

M. Schatz, F. Sedlazeck, J. Gurtowski, 2016, bioRxiv.

A variant in TAF1 is associated with a new syndrome with severe intellectual disability and characteristic dysmorphic features

G. Highnam, D. Mittelman, A. Rope, 2015, bioRxiv.

Reducing INDEL calling errors in whole genome and exome sequencing data

M. Schatz, I. Iossifov, G. Lyon, 2014, Genome Medicine.

Comprehensive whole genome sequencing of a three generation pedigree : genetic components of a new syndrome with Severe Developmental Delay and Dysmorphic Features

G. Highnam, D. Mittelman, A. Rope, 2014 .

Genome-wide variant analysis of simplex autism families with an integrative clinical-bioinformatics pipeline

I. Iossifov, G. Lyon, Han Fang, 2015, Cold Spring Harbor molecular case studies.

TAF1 Variants Are Associated with Dysmorphic Features, Intellectual Disability, and Neurological Manifestations

Edward Yang, Laurence Faivre, Jillian S Parboosingh, 2015, American journal of human genetics.

Genome Wide Variant Analysis of Simplex Autism Families with an Integrative Clinical-Bioinformatics Pipeline

I. Iossifov, G. Lyon, Han Fang, 2015, bioRxiv.

Accurate detection of de novo and transmitted INDELs within exome-capture data using micro-assembly

Michael C. Schatz, Giuseppe Narzisi, Michael Wigler, 2014, bioRxiv.

Accurate detection of complex structural variations using single molecule sequencing

Michael C. Schatz, Moritz Smolka, Philipp Rescheneder, 2017, Nature Methods.

GenomeScope: Fast reference-free genome profiling from short reads

Han Fang, Michael C. Schatz, Fritz J. Sedlazeck, 2016, bioRxiv.

Proteomic and genomic characterization of a yeast model for Ogden syndrome

G. Lyon, Jonathan Crain, Han Fang, 2016, bioRxiv.

Accurate detection of de novo and transmitted indels within exome-capture data using micro-assembly

M. Schatz, Yoon-ha Lee, M. Wigler, 2014, Nature Methods.

HadoopCNV: A dynamic programming imputation algorithm to detect copy number variants from sequencing data

Gary K. Chen, Hui Yang, Max M. He, 2017, bioRxiv.

Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.

Adam Siepel, Han Fang, Yi-Fei Huang, 2018, Cell systems.

"Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions"

Han Fang, Gholson J. Lyon, G. Lyon, 2014 .

Whole genome sequencing of one complex pedigree illustrates challenges with genomic medicine

Han Fang, David Mittelman, Gholson J. Lyon, 2017, BMC Medical Genomics.

Whole genome analysis of an extended pedigree with Prader–Willi Syndrome, hereditary hemochromatosis, and dysautonomia-like symptoms

G. Highnam, D. Mittelman, G. Lyon, 2015, bioRxiv.

Human Genetics and Genomic Medicine

G. Lyon, M. Doerfel, Han Fang, 2012 .

Reducing INDEL errors in whole-genome and exome sequencing

M. Schatz, I. Iossifov, G. Narzisi, 2014 .