X. Messeguer

发表

Evidence for functional and non-functional classes of peptides translated from long non-coding RNAs

M. Albà, J. L. Villanueva-Cañas, Jorge Ruiz-Orera, 2016, bioRxiv.

Long non-coding RNAs as a source of new peptides

M. Albà, J. A. Subirana, Jorge Ruiz-Orera, 2014, eLife.

Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana.

J. Casacuberta, X. Messeguer, J. R. Goñi, 2002, Molecular biology and evolution.

Housekeeping genes tend to show reduced upstream sequence conservation

L. Mularoni, Domènec Farré, M. Albà, 2007, Genome Biology.

Unique Features of Tandem Repeats in Bacteria

J. A. Subirana, X. Messeguer, 2020, Journal of Bacteriology.

Concurrent Rebalancing of Avl Trees: a Ne-grained Approach Ecole Normale Supérieure De Lyon Concurrent Rebalancing of Avl Trees: a Ne-grained Approach Concurrent Rebalancing of Avl Trees: a Ne-grained Approach

X. Messeguer, N. Schabanel, J. Gabarr, 2007 .

Frequent birth of de novo genes in the compact yeast genome

M. Mar Albà, J. Díez, Lorena Espinar, 2019, bioRxiv.

Satellites in the prokaryote world

J. A. Subirana, X. Messeguer, 2019, BMC Evolutionary Biology.

Evolution of Tandem Repeat Satellite Sequences in Two Closely Related Caenorhabditis Species. Diminution of Satellites in Hermaphrodites

J. A. Subirana, X. Messeguer, 2017, Genes.

A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats

Xavier Messeguer, Mark A. Ragan, Todd J. Treangen, 2009, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats

Xavier Messeguer, Mark A. Ragan, Todd J. Treangen, 2008, ISBRA.

DnaSP, DNA polymorphism analyses by the coalescent and other methods

Xavier Messeguer, Julio Rozas, Ricardo Rozas, 2003, Bioinform..

PROMO: detection of known transcription regulatory elements using species-tailored searches

Xavier Messeguer, Javier Martínez, Domènec Farré, 2002, Bioinform..

Analyzing patterns of microbial evolution using the mauve genome alignment system.

Xavier Messeguer, Aaron E Darling, Todd J Treangen, 2007, Methods in molecular biology.

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

Xavier Messeguer, Todd J. Treangen, T. Treangen, 2006, BMC Bioinformatics.

Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN

Mario Huerta, Xavier Messeguer, Domènec Farré, 2003, Nucleic Acids Res..

DNA Satellites Are Transcribed as Part of the Non-Coding Genome in Eukaryotes and Bacteria

J. A. Subirana, X. Messeguer, 2021, Genes.

Uncovering de novo gene birth in yeast using deep transcriptomics

J. Díez, M. Albà, L. Carey, 2021, Nature Communications.

Translation of neutrally evolving peptides provides a basis for de novo gene evolution

M. Albà, J. L. Villanueva-Cañas, Jorge Ruiz-Orera, 2018, Nature Ecology & Evolution.

The most frequent short sequences in non-coding DNA

J. A. Subirana, X. Messeguer, 2009, Nucleic acids research.

Multiple non-collinear TF-map alignments of promoter regions

Enrique Blanco, Xavier Messeguer, Roderic Guigó, 2007, BMC Bioinformatics.

High evolutionary turnover of satellite families in Caenorhabditis

M. Albà, J. A. Subirana, X. Messeguer, 2015, BMC Evolutionary Biology.

ABS: a database of Annotated regulatory Binding Sites from orthologous promoters

Enrique Blanco, Xavier Messeguer, Domènec Farré, 2005, Nucleic Acids Res..

Satellites in the prokaryote world

J. A. Subirana, X. Messeguer, 2019, BMC Evolutionary Biology.

MREPATT: detection and analysis of exact consecutive repeats in genomic sequences

Xavier Messeguer, Roman Roset, Juan A. Subirana, 2003, Bioinform..

A taxonomy of organ-specific breast cancer metastases based on a protein-protein interaction network.

Xavier Messeguer, Javier García-García, Rebeca Sanz-Pamplona, 2012, Molecular bioSystems.

The distribution of alternating AT sequences in eukaryotic genomes suggests a role in homologous chromosome recognition in meiosis.

J. A. Subirana, X. Messeguer, 2011, Journal of theoretical biology.

Unique Features of Satellite DNA Transcription in Different Tissues of Caenorhabditis elegans

J. A. Subirana, X. Messeguer, 2023, International journal of molecular sciences.

Structural families of genomic microsatellites.

J. A. Subirana, X. Messeguer, 2008, Gene.

Concurrent Rebalancing of ACL Trees: A Fine-Grained Approach (Extended Abstract)

Joaquim Gabarró, Luc Bougé, Nicolas Schabanel, 1997, Euro-Par.

A Satellite Explosion in the Genome of Holocentric Nematodes

J. A. Subirana, X. Messeguer, 2013, PloS one.

Tandem Repeats in Bacillus: Unique Features and Taxonomic Distribution

J. A. Subirana, X. Messeguer, 2021, International journal of molecular sciences.

Transcription Factor Map Alignment of Promoter Regions

Enrique Blanco, Xavier Messeguer, Roderic Guigó, 2006, PLoS Comput. Biol..

Evolutionary Trajectories of New Duplicated and Putative De Novo Genes

M. Albà, X. Messeguer, J. Montañés, 2023, Molecular biology and evolution.

A unified approach to concurrent and parallel algorithms on balanced data structures

Joaquim Gabarró, Xavier Messeguer, J. Gabarró, 1997, Proceedings 17th International Conference of the Chilean Computer Science Society.

A Design of a Parallel Dictionary Using Skip Lists

Conrado Martínez, Joaquim Gabarró, Xavier Messeguer, 1996, Theor. Comput. Sci..

Fringe analysis of synchronized parallel insertion algorithms in 2-3 Trees

Ricardo A. Baeza-Yates, Joaquim Gabarró, Xavier Messeguer, 2003, Theor. Comput. Sci..

Deletion Algorithms for Binary Search Trees

X. Messeguer, C Mart, X Messeguer, 1994 .

Procrastination Leads to Efficient Filtration for Local Multiple Alignment

Xavier Messeguer, Louxin Zhang, Todd J. Treangen, 2006, WABI.