Yupeng Cun

发表

Pan-cancer analysis of whole genomes

Steven J. M. Jones, Nuno A. Fonseca, Icgc, 2020, Nature.

Review Biomarker Gene Signature Discovery Integrating Network Knowledge

Holger Fröhlich, Yupeng Cun, H. Fröhlich, 2012 .

Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

Benjamin J. Raphael, Lincoln D. Stein, Dale W. Garsed, 2020, Nature Communications.

Inferring structural variant cancer cell fraction

Roland Eils, Yuan Ji, Jan Schröder, 2020, Nature Communications.

Prognostic gene signatures for patient stratification in breast cancer - accuracy, stability and interpretability of gene selection approaches using prior knowledge on protein-protein interactions

Holger Fröhlich, Yupeng Cun, H. Fröhlich, 2012, BMC Bioinformatics.

Integrating Prior Knowledge Into Prognostic Biomarker Discovery based on Network Structure

H. Frohlich, Yupeng Cun, 2012, 1212.3214.

Regressive Autism Spectrum Disorder: High Levels of Total Secreted Amyloid Precursor Protein and Secreted Amyloid Precursor Protein-α in Plasma

Yupeng Cun, Jie Chen, Tingyu Li, 2022, Frontiers in Psychiatry.

Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors

Martin Vingron, Thomas Zander, Yupeng Cun, 2018, Nature Communications.

Comprehensive genomic profiles of small cell lung cancer

Martin Vingron, Jan O. Korbel, Lucia Anna Muscarella, 2015, Nature.

Identification of potential key genes for immune infiltration in childhood asthma by data mining and biological validation

Yupeng Cun, Qin-yuan Li, Z. Luo, 2022, Frontiers in Genetics.

Conservation Significance of the Rare and Endangered Tree Species, Trigonobalanus doichangensis (Fagaceae)

Yupeng Cun, Yun‐Hong Tan, Shi-Shun Zhou, 2022, Diversity.

Long-term effects of vitamin D on exacerbation rate, health care utilization and lung function in children with asthma

Yupeng Cun, Yaolong Chen, Guang-li Zhang, 2022, Annals of translational medicine.

Transcriptomic profile of tobacco in response to Tomato zonate spot orthotospovirus infection

B. Wang, B. Xiao, Yupeng Cun, 2017, Virology Journal.

Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics

Holger Fröhlich, Yupeng Cun, H. Fröhlich, 2013, PloS one.

Patterns of somatic structural variation in human cancer genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature.

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature Communications.

Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors

I. Petersen, D. Hayes, M. Wilkerson, 2018, Nature Communications.

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Benjamin J. Raphael, Lincoln D. Stein, Dale W. Garsed, 2020, Cell.

Two mouse models reveal an actionable PARP1 dependence in aggressive chronic lymphocytic leukemia

M. Peifer, M. Hallek, M. Montesinos-Rongen, 2017, Nature Communications.

Neutral tumor evolution?

Benjamin J. Raphael, Florian Markowetz, Iñigo Martincorena, 2017, Nature Genetics.

Copy-number analysis and inference of subclonal populations in cancer genomes using Sclust

Yupeng Cun, Tsun-Po Yang, Viktor Achter, 2018, Nature Protocols.

Transcriptomic profile of tobacco in response to Tomato zonate spot orthotospovirus infection

B. Wang, B. Xiao, Yupeng Cun, 2017, Virology Journal.

Numerical Studies of the Evolutionary Rate of Mutant Allele at Duplicate Loci

Yupeng Cun, 2010 .

On the Evolutionary Fate of Mutant Allele at Duplicate Loci: a Theoretical and Simulation Study

Yupeng Cun, 2010, 1007.0333.

Comprehensive molecular characterization of mitochondrial genomes in human cancers

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2017, bioRxiv.

Author Correction: Pan-cancer analysis of whole genomes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2023, Nature.

COSINE: A web server for clonal and subclonal structure inference and evolution in cancer genomics.

T. Guo, M. Peifer, Xiguo Yuan, 2021, Zoological research.

Sex differences in oncogenic mutational processes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2019, Nature Communications.

Transcriptomic analysis identified SLC40A1 as a key iron metabolism-related gene in airway macrophages in childhood allergic asthma

Yupeng Cun, Yan Zhao, Z. Luo, 2023, Frontiers in Cell and Developmental Biology.

Targeting ASIC1a Promotes Neural Progenitor Cell Migration and Neurogenesis in Ischemic Stroke

Rong Hu, Yupeng Cun, Jun Zhong, 2023, Research.

A D-peptide-based HIV gelatinous combination vaccine improves therapy in ART-delayed macaques of chronic infection

Xiaolin Ji, Chunying Chen, Yupeng Cun, 2022, Nano Today.

The evolutionary history of 2,658 cancers

Benjamin J. Raphael, Salem Malikic, Martin Peifer, 2017, Nature.

Two mouse models reveal an actionable PARP1 dependence in aggressive chronic lymphocytic leukemia

Yupeng Cun, Martin Peifer, Thorsten Persigehl, 2017, Nature Communications.

netClass: an R-package for network based, integrative biomarker signature discovery

Holger Fröhlich, Yupeng Cun, H. Fröhlich, 2014, Bioinform..

A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns

Nuno A. Fonseca, Benjamin J. Raphael, Allison P. Heath, 2020, Nature Communications.

netClass: an R-package for network based, integrative biomarker signature discovery

H. Fröhlich, Yupeng Cun, 2014, Bioinform..

Biomarker Gene Signature Discovery Integrating Network Knowledge

H. Fröhlich, Yupeng Cun, 2012, Biology.