B. Bartholomew

发表

De novo identification of essential protein domains from CRISPR-Cas9 tiling-sgRNA knockout screens

Xiaobing Shi, M. Bedford, Wei He, 2019, Nature Communications.

Dynamic regulation of transcription factors by nucleosome remodeling

Scott Forth, Michelle D. Wang, Jeffrey N. McKnight, 2015, eLife.

ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps

William L. Hwang, Xiaowei Zhuang, X. Zhuang, 2013, Cell.

De novo identification of essential protein domains from CRISPR-Cas9 tiling-sgRNA knockout screens

Xiaobing Shi, M. Bedford, Wei He, 2019, Nature Communications.

Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms

Song Tan, Song Tan, M. Shogren-Knaak, 2011, Nucleic acids research.

Functional Role of Extranucleosomal DNA and the Entry Site of the Nucleosome in Chromatin Remodeling by ISW2

M. Zofall, B. Bartholomew, J. Persinger, 2004, Molecular and Cellular Biology.

SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes.

M. L. Dechassa, M. Kladde, S. Pondugula, 2010, Molecular cell.

The Interactions of Yeast SWI/SNF and RSC with the Nucleosome before and after Chromatin Remodeling*

B. Cairns, C. Peterson, C. Logie, 2001, The Journal of Biological Chemistry.

Site-directed histone-DNA contact mapping for analysis of nucleosome dynamics.

B. Bartholomew, Stefan R. Kassabov, 2004, Methods in enzymology.

Topography of transcription factor complexes on the Saccharomyces cerevisiae 5 S RNA gene.

E. Geiduschek, B. R. Braun, G. Kassavetis, 1992, Journal of molecular biology.

Architecture of the SWI/SNF-Nucleosome Complex (cid:1)

C. Peterson, Rachel A. Horowitz-Scherer, C. Woodcock, 2008 .

Disparity in the DNA translocase domains of SWI/SNF and ISW2

M. L. Dechassa, P. Prasad, Swetansu K. Hota, 2012, Nucleic acids research.

INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation.

D. Loew, F. Dingli, Sandipan Brahma, 2015, Molecular cell.

Elongation Factor SII Contacts the 3′-End of RNA in the RNA Polymerase II Elongation Complex*

B. Bartholomew, D. Reines, W. Powell, 1996, The Journal of Biological Chemistry.

Orientation and topography of RNA polymerase III in transcription complexes

E. Geiduschek, G. Kassavetis, B. Bartholomew, 1993, Molecular and cellular biology.

An RNA binding module of SWI/SNF is required for activation of cell-type specific enhancers and super-enhancers in early development

Abhinav K. Jain, Yue Lu, B. Bartholomew, 2022, bioRxiv.

Photoaffinity labeling of RNA polymerase III transcription complexes by nascent RNA.

C. Meares, B. Bartholomew, M. Dahmus, 1990, The Journal of biological chemistry.

Probing close DNA contacts of RNA polymerase III transcription complexes with the photoactive nucleoside 4-thiodeoxythymidine.

E. Geiduschek, B. R. Braun, G. Kassavetis, 1994, The Journal of biological chemistry.

The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling

Sandipan Brahma, B. Bartholomew, Somnath Paul, 2018, Nature Communications.

Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes

K. Luger, Sheena D'arcy, B. Bartholomew, 2016, Molecular and Cellular Biology.

Approaches for studying nucleosome movement by ATP-dependent chromatin remodeling complexes.

Swetansu K. Hota, B. Bartholomew, 2012, Methods in molecular biology.

Control of nucleosome movement: To space or not to space nucleosomes?

P. Prasad, B. Bartholomew, 2010, Epigenetics.

Two essential components of the Saccharomyces cerevisiae transcription factor TFIIIB: transcription and DNA-binding properties.

E. Geiduschek, G. Kassavetis, B. Bartholomew, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Site-directed DNA photoaffinity labeling of RNA polymerase III transcription complexes.

B. Bartholomew, J. Persinger, 2001, Methods in molecular biology.

The Regulation of RNA Polymerase II Activity by Multisite Phosphorylation

J. A. Payne, Woo-Yeon Kim, P. Laybourn, 1990 .

Survey of four different photoreactive moieties for DNA photoaffinity labeling of yeast RNA polymerase III transcription complexes.

B. Bartholomew, J. Persinger, J. J. Tate, 1998, Nucleic acids research.

Mapping the Contacts of Yeast TFIIIB and RNA Polymerase III at Various Distances from the Major Groove of DNA by DNA Photoaffinity Labeling*

B. Bartholomew, J. Persinger, 1996, The Journal of Biological Chemistry.

Probing the protein-DNA contacts of a yeast RNA polymerase III transcription complex in a crude extract: solid phase synthesis of DNA photoaffinity probes containing a novel photoreactive deoxycytidine analog.

B. Bartholomew, B. Lannutti, J. Persinger, 1996, Biochemistry.

Regulation of ATP-dependent chromatin remodelers: accelerators/brakes, anchors and sensors.

B. Bartholomew, Somnath Paul, 2018, Biochemical Society transactions.

FACT and the Proteasome Promote Promoter Chromatin Disassembly and Transcriptional Initiation*

Jeffrey G. Linger, M. L. Dechassa, J. Tyler, 2009, The Journal of Biological Chemistry.

Conformational changes associated with template commitment in ATP-dependent chromatin remodeling by ISW2.

Vamsi K. Gangaraju, P. Prasad, B. Bartholomew, 2009, Molecular cell.

Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex.

J. Ranish, Jie Luo, M. L. Dechassa, 2017, Cell reports.

Regulating the chromatin landscape: structural and mechanistic perspectives.

B. Bartholomew, Blaine Bartholomew, 2014, Annual review of biochemistry.

Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains

X. Zhuang, S. Deindl, Swetansu K. Hota, 2013, Nature Structural &Molecular Biology.

Identification of Previously Unrecognized Common Elements in Eukaryotic Promoters

B. Bartholomew, M. Paule, C. Radebaugh, 1997, The Journal of Biological Chemistry.

Photochemical cross-linking assay for DNA tracking by replication proteins.

E. Geiduschek, G. Kassavetis, B. Bartholomew, 1995, Methods in enzymology.

The subunit structure of Saccharomyces cerevisiae transcription factor IIIC probed with a novel photocrosslinking reagent.

E. Geiduschek, B. R. Braun, G. Kassavetis, 1990, The EMBO journal.

Spatial Organization of the Core Region of Yeast TFIIIB-DNA Complexes

B. Bartholomew, Sarojini M. Sengupta, J. Persinger, 1999, Molecular and Cellular Biology.

Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex

Song Tan, M. Jennings, B. Bartholomew, 2015, Nucleic acids research.

Photocrosslinking assay Synthesis of photoreactive phosphorothioate DNA probes : A series of 36 photoreactive phosphorothioate

Song Tan, M. Jennings, B. Bartholomew, 2015 .

Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II

Huan Meng, B. Bartholomew, Blaine Bartholomew, 2017, The Journal of Biological Chemistry.

An Asymmetric Model for the Nucleosome: A Binding Site for Linker Histones Inside the DNA Gyres

B Bartholomew, A. Wolffe, G. Arents, 1996, Science.

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

M. Zofall, B. Bartholomew, Blaine Bartholomew, 2006, Nature Structural &Molecular Biology.

The Mi-2 Homolog Mit1 Actively Positions Nucleosomes within Heterochromatin To Suppress Transcription

G. Neale, G. Job, J. Partridge, 2014, Molecular and Cellular Biology.

Use of DNA photoaffinity labeling to study nucleosome remodeling by SWI/SNF.

C. Peterson, B. Bartholomew, J. Persinger, 1999, Methods.

Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit.

Carolina E. Pardo, Russell P. Darst, M. Kladde, 2012, Methods in molecular biology.

DNA methyltransferase-based single-molecule ( MAPit ) assay for mapping protein-DNA interactions in vitro ( PROT 45 )

Vamsi K. Gangaraju, S. Pondugula, B. Bartholomew, 2011 .

Stepwise nucleosome translocation by RSC remodeling complexes

William L. Hwang, Xiaowei Zhuang, X. Zhuang, 2016, eLife.

The SnAC Domain of SWI/SNF Is a Histone Anchor Required for Remodeling

M. Poirier, M. L. Dechassa, B. Bartholomew, 2012, Molecular and Cellular Biology.

Nuclear DEAF-1-related (NUDR) Protein Contains a Novel DNA Binding Domain and Represses Transcription of the Heterogeneous Nuclear Ribonucleoprotein A2/B1 Promoter*

B. Bartholomew, R. Michelson, A. Ziemba, 1999, The Journal of Biological Chemistry.

Dependency of ISW1a Chromatin Remodeling on Extranucleosomal DNA

Vamsi K. Gangaraju, B. Bartholomew, Vamsi K Gangaraju, 2007, Molecular and Cellular Biology.

The SWI/SNF and RSC Nucleosome Remodeling Complexes

B. Bartholomew, P. Sen, N. Chatterjee, 2010 .

Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling

Michael G. Poirier, Sarah Javaid, J. W. Picking, 2011, Nucleic acids research.

The Dpb4 Subunit of ISW2 Is Anchored to Extranucleosomal DNA*

B. Bartholomew, Weiwei Dang, Mohamedi N. Kagalwala, 2007, Journal of Biological Chemistry.

Histone Octamer Structure Is Altered Early in ISW2 ATP-Dependent Nucleosome Remodeling.

A. Panchenko, J. Ranish, Jie Luo, 2019, Cell reports.

Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex

J. Ranish, G. Peng, Jie Luo, 2015, Genes & development.

Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation

Sandipan Brahma, Swetansu K. Hota, B. Bartholomew, 2020, Nature Communications.

INO80 exchanges H2A.Z for H2A by translocating on DNA proximal to histone dimers

Sandipan Brahma, B. Bartholomew, Blaine Bartholomew, 2017, Nature Communications.

Mapping protein-DNA and protein-protein interactions of ATP-dependent chromatin remodelers.

M. L. Dechassa, P. Prasad, Swetansu K. Hota, 2012, Methods in molecular biology.

The INO80 ATP-Dependent Chromatin Remodeling Complex Is a Nucleosome Spacing Factor

B. Bartholomew, M. Udugama, Abdellah Sabri, 2010, Molecular and Cellular Biology.

Mechanisms of ATP dependent chromatin remodeling.

Vamsi K. Gangaraju, B. Bartholomew, Blaine Bartholomew, 2007, Mutation research.

Regulation of ISW2 by Concerted Action of Histone H4 Tail and Extranucleosomal DNA

B. Bartholomew, Weiwei Dang, Mohamedi N. Kagalwala, 2006, Molecular and Cellular Biology.

SWI/SNF unwraps, slides, and rewraps the nucleosome.

B. Bartholomew, Blaine Bartholomew, Jim Persinger, 2003, Molecular cell.

High-Resolution Mapping of Changes in Histone-DNA Contacts of Nucleosomes Remodeled by ISW2

M. Zofall, T. Tsukiyama, B. Bartholomew, 2002, Molecular and Cellular Biology.

The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling

Sandipan Brahma, B. Bartholomew, Somnath Paul, 2018, Nature Communications.

A new, highly conserved domain in Swi2/Snf2 is required for SWI/SNF remodeling

B. Pugh, B. Bartholomew, P. Sen, 2011, Nucleic acids research.

Yeast Isw1p Forms Two Separable Complexes In Vivo

C. Kooperberg, J. Qin, T. Tsukiyama, 2003, Molecular and Cellular Biology.

Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC

E. Geiduschek, G. Kassavetis, B. Bartholomew, 1991, Molecular and cellular biology.

ISWI chromatin remodeling: one primary actor or a coordinated effort?

B. Bartholomew, 2014, Current opinion in structural biology.

Diversity of operation in ATP-dependent chromatin remodelers.

Swetansu K. Hota, B. Bartholomew, 2011, Biochimica et biophysica acta.

Proteasomes beyond proteolysis: Roles in heterochromatin maintenance

B. Bartholomew, 2017, The Journal of Biological Chemistry.

Purification of Active TFIID from Saccharomyces cerevisiae

Hanno Steen, Steven P. Gygi, S. Gygi, 2004, Journal of Biological Chemistry.

Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF

K. Luger, M. Poirier, M. L. Dechassa, 2015, Molecular and Cellular Biology.

Histone H 3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms

Song Tan, M. Shogren-Knaak, B. Bartholomew, 2011 .

Architecture of the SWI/SNF-Nucleosome Complex

C. Peterson, Rachel A. Horowitz-Scherer, C. Woodcock, 2008, Molecular and Cellular Biology.

Topography of the ISW2–nucleosome complex: insights into nucleosome spacing and chromatin remodeling

M. Zofall, B. Bartholomew, Weiwei Dang, 2004, The EMBO journal.

RNA contacts subunits IIo and IIc in HeLa RNA polymerase II transcription complexes.

C. Meares, B. Bartholomew, M. Dahmus, 1986, The Journal of biological chemistry.

Architecture of the SWI / SNF-Nucleosome Complex Mekonnen

C. Peterson, Rachel A. Horowitz-Scherer, C. Woodcock, 2008 .

Domain Architecture of the Catalytic Subunit in the ISW2-Nucleosome Complex

B. Bartholomew, Weiwei Dang, 2007, Molecular and Cellular Biology.

A polar barrier to transcription can be circumvented by remodeler-induced nucleosome translocation

Daria A. Gaykalova, Vasily M. Studitsky, V. Studitsky, 2011, Nucleic acids research.

Site-directed DNA crosslinking of large multisubunit protein-DNA complexes.

B. Bartholomew, J. Persinger, 2009, Methods in molecular biology.

The Arp8 and Arp4 module acts as a DNA sensor controlling INO80 chromatin remodeling

Sandipan Brahma, B. Bartholomew, Somnath Paul, 2018, Nature Communications.

The AT-hook is an evolutionarily conserved auto-regulatory domain of SWI/SNF required for cell lineage priming

J. Ranish, Jie Luo, Abhinav K. Jain, 2023, Nature communications.

Regulating the chromatin landscape: structural and mechanistic perspectives.

B. Bartholomew, 2014, Annual review of biochemistry.

INO80 Chromatin Remodeler Facilitates Release of RNA Polymerase II from Chromatin for Ubiquitin-Mediated Proteasomal Degradation.

D. Loew, Sandipan Brahma, B. Bartholomew, 2015, Molecular cell.

Simultaneous single-molecule detection of endogenous C-5 DNA methylation and chromatin accessibility using MAPit.

Carolina E. Pardo, Russell P. Darst, M. Kladde, 2012, Methods in molecular biology.

Nucleosome mobilization by ISW2 requires the concerted action of the ATPase and SLIDE domains

X. Zhuang, S. Deindl, Swetansu K. Hota, 2013, Nature Structural &Molecular Biology.

The Mi-2 Homolog Mit1 Actively Positions Nucleosomes within Heterochromatin To Suppress Transcription

G. Neale, G. Job, J. Partridge, 2014, Molecular and Cellular Biology.

Loss of Snf5 Induces Formation of an Aberrant SWI/SNF Complex.

J. Ranish, Jie Luo, M. L. Dechassa, 2017, Cell reports.

ISWI chromatin remodeling: one primary actor or a coordinated effort?

B. Bartholomew, 2014, Current opinion in structural biology.

ISWI Remodelers Slide Nucleosomes with Coordinated Multi-Base-Pair Entry Steps and Single-Base-Pair Exit Steps

William L. Hwang, X. Zhuang, S. Deindl, 2013, Cell.

Enhancer switching in cell lineage priming is linked to eRNA, Brg1's AT-hook, and SWI/SNF recruitment.

B. Bartholomew, Junwoo Lee, Srinivas Animireddy, 2024, Molecular cell.