S. Gagneux
发表
J. Stelling,
U. Sauer,
M. Zampieri,
2019,
Proceedings of the National Academy of Sciences of the United States of America.
J. Stelling,
U. Sauer,
M. Zampieri,
2019,
Proceedings of the National Academy of Sciences.
Ludovic C. Gillet,
Ben C. Collins,
Olga T. Schubert,
2020,
bioRxiv.
P. Small,
D. van Soolingen,
S. Gagneux,
2005,
Journal of Clinical Microbiology.
S. Gagneux,
L. Flores,
Tran T Van,
2007,
Journal of Clinical Microbiology.
P. Small,
B. D. de Jong,
R. Adegbola,
2008,
The Journal of infectious diseases.
S. Gagneux,
D. Stucki,
David Stucki,
2013,
Tuberculosis.
I. Comas,
D. Young,
S. Gagneux,
2011,
PLoS pathogens.
J. Galagan,
P. Small,
S. Niemann,
2010,
Nature Genetics.
Lisa J. Murray,
G. Smith,
Helen Bignell,
2009,
PloS one.
S. Duthoy,
L. Rigouts,
B. D. de Jong,
2020,
Nature Communications.
S. Duthoy,
L. Rigouts,
B. D. de Jong,
2020,
Nature Communications.
J. Corander,
L. Sánchez-Busó,
S. Harris,
2019,
Science Advances.
J. Corander,
L. Sánchez-Busó,
S. Harris,
2018,
bioRxiv.
J. Corander,
L. Sánchez-Busó,
S. Harris,
2018,
bioRxiv.
K. Holt,
J. Parkhill,
S. Bentley,
2013,
Nature Genetics.
High Functional Diversity in Mycobacterium tuberculosis Driven by Genetic Drift and Human Demography
Stefan Niemann,
Jared C Roach,
Marcus W Feldman,
2008,
PLoS biology.
Z. Iqbal,
T. Walker,
T. Peto,
2022,
medRxiv.
J. Parkhill,
S. Harris,
L. Rigouts,
2020,
bioRxiv.
S. Borrell,
S. Gagneux,
D. Yeboah-Manu,
2018,
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.
Stefan Niemann,
Midori Kato-Maeda,
Serge Mostowy,
2004,
Journal of Clinical Microbiology.
Sebastien Gagneux,
P. Small,
S. Gagneux,
2007,
The Lancet. Infectious diseases.
B. D. de Jong,
M. Antonio,
S. Gagneux,
2010,
PLoS neglected tropical diseases.
S. Harris,
L. Rigouts,
B. D. de Jong,
2018,
Journal of medical microbiology.
R. Copin,
J. Ernst,
V. Escuyer,
2016,
PLoS pathogens.
Gang Sun,
Q. Gao,
L. Via,
2017,
Genome Biology.
Razvan Sultana,
Eric S Lander,
Midori Kato-Maeda,
2013,
Nature Genetics.
J. Farrar,
P. Small,
D. van Soolingen,
2008,
PLoS pathogens.
M Achtman,
A van der Ende,
D. Falush,
2001,
Proceedings of the National Academy of Sciences of the United States of America.
Ben C. Collins,
Sebastian M. Gygli,
R. Aebersold,
2018,
bioRxiv.
S. Gagneux,
M. Coscolla,
2010,
Drug discovery today. Disease mechanisms.
B. D. de Jong,
Nalin Rastogi,
R. Adegbola,
2009,
Journal of Clinical Microbiology.
P. V. van Helden,
R. Warren,
A. Schürch,
2012,
PloS one.
R. Warren,
G. Theron,
S. Gagneux,
2021,
Antimicrobial agents and chemotherapy.
N. Mulder,
J. Parkhill,
R. Wilkinson,
2017,
Molecular biology and evolution.
V. Fofanov,
P. Barry,
J. Posey,
2015,
The Journal of infectious diseases.
T. Clark,
A. Pain,
J. Parkhill,
2014,
Tuberculosis.
P. V. van Helden,
T. Victor,
R. Warren,
2013,
PloS one.
S. Borrell,
S. Gagneux,
2009
.
R. Wittig,
S. Cole,
I. Morozova,
2020,
Nature.
F. Binka,
T. Smith,
B. Genton,
2001,
International journal of epidemiology.
C. Beisel,
M. Nicol,
S. Borrell,
2022,
Journal of clinical microbiology.
F. Binka,
T. Smith,
B. Genton,
2001,
Transactions of the Royal Society of Tropical Medicine and Hygiene.
N. Chitnis,
R. Wood,
F. Mhimbira,
2017,
The Journal of infection.
S. Abdulla,
A. Sheikh,
V. Gant,
2015,
Nature Reviews Drug Discovery.
A. von Eckardstein,
N. Probst-Hensch,
P. Bovet,
2016,
The Journal of infectious diseases.
A. Ross,
K. Reither,
C. Denkinger,
2021,
The Cochrane database of systematic reviews.
M. Zwahlen,
L. Risch,
K. Reither,
2018,
PloS one.
A. Aseffa,
S. Gagneux,
D. Young,
2013
.
A. Ross,
K. Reither,
C. Denkinger,
2018
.
K. Reither,
S. Gagneux,
D. Portevin,
2021,
Scientific Reports.
J. Flynn,
A. Rosenthal,
Michael Tartakovsky,
2013,
Infection and Immunity.
C. Boesch,
J. Parkhill,
S. Niemann,
2013,
Emerging infectious diseases.
P. V. van Helden,
T. Victor,
R. Warren,
2012,
Antimicrobial Agents and Chemotherapy.
M. Chase,
M. Lamers,
S. Fortune,
2015,
Nature Genetics.
Gang Sun,
Q. Gao,
I. Comas,
2015,
Proceedings of the National Academy of Sciences.
Sebastian M. Gygli,
Liliana K. Rutaihwa,
A. Garcia-Basteiro,
2021,
F1000Research.
Sebastian M. Gygli,
Liliana K. Rutaihwa,
A. Garcia-Basteiro,
2020,
bioRxiv.
TnSeq of Mycobacterium tuberculosis clinical isolates reveals strain-specific antibiotic liabilities
M. Chase,
S. Fortune,
J. Sacchettini,
2018,
PLoS pathogens.
M. Zwahlen,
M. Egger,
M. Battegay,
2011,
Journal of Clinical Microbiology.
M. Egger,
T. Bodmer,
S. Borrell,
2011,
PloS one.
M. Egger,
C. Burri,
S. Borrell,
2011
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Q. Gao,
B. Gicquel,
S. Gagneux,
2011,
Journal of Clinical Microbiology.
P. Small,
B. D. de Jong,
R. Adegbola,
2006,
The Journal of infectious diseases.
P. Small,
B. D. de Jong,
S. Gagneux,
2005,
Journal of Clinical Microbiology.
Liliana K. Rutaihwa,
D. van Soolingen,
P. Suffys,
2019,
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
C. Sola,
S. Gagneux,
D. Stucki,
2017,
PloS one.
P. Small,
P. Hopewell,
S. Gagneux,
2011,
The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
C. Stein,
E. Mupere,
W. Boom,
2019,
PloS one.
J. Hattendorf,
S. Borrell,
S. Gagneux,
2016,
BMC Infectious Diseases.
S. Gordon,
Elena Hailu,
A. Aseffa,
2015,
BMC Infectious Diseases.
P. Siba,
S. Phuanukoonnon,
J. Feldmann,
2014,
BMC Microbiology.
J. Schrenzel,
M. Zwahlen,
M. Egger,
2013,
PLoS genetics.
K. Reither,
S. Borrell,
S. Gagneux,
2019,
PloS one.
J. Farrar,
T. Hien,
C. Simmons,
2008,
Journal of Clinical Microbiology.
S. Borrell,
S. Gagneux,
2011,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
J. Parkhill,
L. Sánchez-Busó,
S. Harris,
2017,
Scientific Reports.
J. Parkhill,
L. Sánchez-Busó,
S. Harris,
2017,
bioRxiv.
W. Bishai,
R. Copin,
J. Ernst,
2015,
Chemistry & biology.
S. Gordon,
B. Loftus,
Elena Hailu,
2013,
Emerging infectious diseases.
Liliana K. Rutaihwa,
K. Reither,
D. Brites,
2019,
PloS one.
J. Zinsstag,
S. Borrell,
J. Feldmann,
2017,
BMC Veterinary Research.
S. Gagneux,
D. Yeboah-Manu,
I. Otchere,
2016,
Tuberculosis.
M. Egger,
M. Yotebieng,
L. Diero,
2018,
bioRxiv.
Liliana K. Rutaihwa,
M. Tanner,
J. Utzinger,
2018,
Infectious Diseases of Poverty.
A. Ross,
K. Reither,
C. Denkinger,
2020,
European Respiratory Journal.
K. Reither,
F. Mhimbira,
S. Gagneux,
2017,
BMC Infectious Diseases.
S. Gagneux,
2009,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
M. Weiss,
K. de Hoogh,
K. Reither,
2019,
BMJ Open.
B. Birren,
J. Galagan,
T. Victor,
2014
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M. Nsereko,
E. Mupere,
W. Boom,
2015,
BMC Pediatrics.
M. Achtman,
F. Binka,
B. Genton,
2002,
Emerging infectious diseases.
G. Pluschke,
S. Gagneux,
Tom A Smith,
2005,
The Journal of infectious diseases.
J. Parkhill,
S. Harris,
S. Gagneux,
2016,
International journal of mycobacteriology.
S. Gagneux,
D. Yeboah-Manu,
I. Otchere,
2015,
The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
G. Pluschke,
S. Gagneux,
Tom A Smith,
2005,
Tropical medicine & international health : TM & IH.
M. Achtman,
F. Binka,
B. Genton,
2002,
The Journal of infectious diseases.
M. Achtman,
G. Pluschke,
S. Gagneux,
2007,
PLoS medicine.
G. Bloemberg,
T. Latshang,
S. Borrell,
2015,
The New England journal of medicine.
S. Harris,
L. Rigouts,
S. Gagneux,
2018
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J. Ocampo-Candiani,
M. Gonzalez-Juarrero,
M. Jackson,
2022,
Emerging infectious diseases.
S. Niemann,
S. Peacock,
C. Köser,
2019
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S. Niemann,
S. Peacock,
C. Köser,
2019,
Antimicrobial Agents and Chemotherapy.
N. Probst-Hensch,
G. Pantaleo,
K. Reither,
2018,
Immunity, inflammation and disease.
Liliana K. Rutaihwa,
J. Fellay,
M. Yotebieng,
2022,
medRxiv.
Kelly M. Harkins,
J. Parkhill,
D. Huson,
2014,
Nature.
Stefan Niemann,
Sebastien Gagneux,
S. Niemann,
2009,
PloS one.
Sebastian M. Gygli,
M. Egger,
M. Yotebieng,
2018,
Antimicrobial Agents and Chemotherapy.
S. Gagneux,
2012,
Philosophical Transactions of the Royal Society B: Biological Sciences.
Sebastian M. Gygli,
Sonia Borrell,
Sebastien Gagneux,
2017,
FEMS microbiology reviews.
Stefan Niemann,
Midori Kato-Maeda,
Sonia Borrell,
2011,
Nature Genetics.
Stefan Niemann,
Midori Kato-Maeda,
Sonia Borrell,
2011
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S. Borrell,
S. Gagneux,
S Gagneux,
2009,
The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
S. Gagneux,
2018,
Nature Reviews Microbiology.
C. Locht,
R. Wintjens,
M. Gitzinger,
2017,
Science.
J. Pedrosa,
I. Comas,
M. Saraiva,
2013,
Molecular biology and evolution.
D. Brites,
S. Duchêne,
S. Gagneux,
2019,
bioRxiv.
B. D. de Jong,
T. Stadler,
S. Gagneux,
2021,
Epidemics.
Lukas Fenner,
Sonia Borrell,
Sebastien Gagneux,
2012,
PloS one.
P. Small,
S. Gagneux,
2017
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J. Fellay,
S. Rüeger,
K. Reither,
2021,
bioRxiv.
Scott M. Williams,
S. Tishkoff,
G. Sirugo,
2020,
PLoS genetics.
Scott M. Williams,
S. Tishkoff,
G. Sirugo,
2019,
bioRxiv.
D. Brites,
S. Gagneux,
2017,
Advances in experimental medicine and biology.
Stefan Niemann,
Mark Nicol,
Midori Kato-Maeda,
2006,
Proceedings of the National Academy of Sciences of the United States of America.
B. Birren,
J. Galagan,
B. Weiner,
2012,
PloS one.
Marc Lipsitch,
Ted Cohen,
Jennifer Gardy,
2013,
Nature Genetics.
Joshua L. Payne,
Sebastian M. Gygli,
S. Borrell,
2018,
bioRxiv.
J. Vieira,
C. Vieira,
A. Amorim,
2020,
Nature Communications.
J. Utzinger,
S. Knopp,
K. Reither,
2017,
PLoS neglected tropical diseases.
Hansjakob Furrer,
Katia Jaton,
Matthias Egger,
2012,
Antimicrobial Agents and Chemotherapy.
Liliana K. Rutaihwa,
M. Egger,
L. Diero,
2016,
Nature Genetics.
S. Borrell,
J. Feldmann,
S. Gagneux,
2012,
PloS one.
T. Stadler,
D. Brites,
S. Gagneux,
2017,
bioRxiv.
Jakob,
L. Rigouts,
A. Aseffa,
2020
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L. Rigouts,
Elena Hailu,
A. Aseffa,
2019,
bioRxiv.
Sebastian M. Gygli,
Liliana K. Rutaihwa,
L. Diero,
2018,
bioRxiv.
Sebastian M. Gygli,
Liliana K. Rutaihwa,
C. Beisel,
2018,
bioRxiv.
V. Arcus,
N. Karalus,
D. Brites,
2019,
Front. Microbiol..
V. Arcus,
N. Karalus,
D. Brites,
2019,
bioRxiv.
M. Tanner,
M. Achtman,
F. Binka,
2000,
Tropical medicine & international health : TM & IH.
D. Brites,
S. Gagneux,
2015,
Immunological reviews.
Abhinav Sharma,
Edson Machado,
J. Cardoso,
2021,
Memorias do Instituto Oswaldo Cruz.
Liliana K. Rutaihwa,
Abhinav Sharma,
P. Suffys,
2018,
Tuberculosis.
S. Gagneux,
M. Coscollá,
2014,
Seminars in immunology.
S. Borrell,
S. Gagneux,
D. Stucki,
2014,
BMC Genomics.
L. Chindelevitch,
D. Alland,
L. Rigouts,
2018,
Scientific Reports.
K. Reither,
S. Borrell,
A. Trauner,
2014,
Drugs.
H. Steinmetz,
J. Feldmann,
S. Gagneux,
2017,
Scientific Reports.
Nalin Rastogi,
Robin Warren,
Stefan Niemann,
2015,
Nature Genetics.
Christian Beisel,
Fabrizio Menardo,
Chloé Loiseau,
2018,
BMC Bioinformatics.
Yang Zhou,
Qian Gao,
Kris Laukens,
2019,
Nature Reviews Microbiology.
S. Gagneux,
2017,
Advances in Experimental Medicine and Biology.
D. Brites,
S. Gagneux,
2012,
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
I. Comas,
S. Gagneux,
2009,
PLoS pathogens.
Q. Gao,
I. Comas,
Li Jin,
2018,
Nature Ecology & Evolution.
M. Egger,
H. Furrer,
T. Bodmer,
2015,
The Journal of infectious diseases.
S. Niemann,
S. Peacock,
I. Comas,
2014,
Tuberculosis.
U. Sauer,
B. Papp,
P. Picotti,
2018,
Science Translational Medicine.
S Niemann,
F. Cobelens,
F. van Leth,
2023,
The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease.
Marisa Klopper,
Federica Giardina,
Sebastien Gagneux,
2013,
Evolution, medicine, and public health.
S. Borrell,
S. Gagneux,
G. Rose,
2013,
Trends in genetics : TIG.
S. Gagneux,
2013,
Current topics in microbiology and immunology.
C. D. Long,
G. Schoolnik,
P. Small,
2006,
Science.
I. Comas,
M. Saraiva,
S. Gagneux,
2018,
Front. Immunol..
S. Gagneux,
2016,
Ethiopian medical journal.
I. Comas,
S. Gagneux,
2011,
Trends in microbiology.
Nader Pourmand,
Midori Kato-Maeda,
Laura Flores,
2013,
PloS one.
G. Kaplan,
M. Nsereko,
E. Mupere,
2013,
BMC Infectious Diseases.
M. Egger,
S. Gagneux,
L. Fenner,
2009,
International journal of epidemiology.
F. Giardina,
B. D. de Jong,
R. Copin,
2015,
Cell host & microbe.
S. Niemann,
R. Antoine,
S. Borrell,
2022,
Nature Communications.
Sebastian M. Gygli,
C. Beisel,
A. Ross,
2021,
Nature Medicine.
Ruth McNerney,
Leonid Chindelevitch,
Leen Rigouts,
2017,
European Respiratory Journal.
S. Niemann,
R. Diel,
U. Nübel,
2018,
bioRxiv.
D. Brites,
S. Borrell,
S. Gagneux,
2021,
International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.
M. Quail,
J. Parkhill,
S. Bentley,
2012,
PLoS neglected tropical diseases.
E. André,
L. Goeminne,
P. Beckert,
2017,
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
Stefan Niemann,
Mireia Coscolla,
Sonia Borrell,
2012,
BMC Microbiology.
K. Jahn,
Gilbert GREUB,
S. Erb,
2019,
Front. Microbiol..
P. Small,
S. Gagneux,
A. Pym,
2006,
PLoS pathogens.
R. Copin,
J. Ernst,
S. Gagneux,
2014,
mBio.
S. Gagneux,
2014
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I. Comas,
D. Young,
S. Gagneux,
2013,
Genome biology and evolution.
Liliana K. Rutaihwa,
C. Beisel,
K. Reither,
2021,
Frontiers in Microbiology.
S. Borrell,
S. Gagneux,
Rhastin A D Castro,
2020,
FEMS microbiology reviews.
S. Holmes,
P. Small,
S. Gagneux,
2008,
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
J. Schrenzel,
M. Egger,
E. Bernasconi,
2012,
PloS one.
A. Mkopi,
K. Reither,
F. Mhimbira,
2016,
PloS one.
M. Nicol,
S. Borrell,
S. Gagneux,
2021,
medRxiv.
S. Gagneux,
D. Yeboah-Manu,
K. Kusi,
2021,
PloS one.
V. Fofanov,
P. Hopewell,
L. Kawamura,
2012,
Clinical and Vaccine Immunology.
T. Bodmer,
G. Pluschke,
S. Gagneux,
2011,
PloS one.
M. Behr,
C. Beisel,
R. Warren,
2018,
bioRxiv.
M. Egger,
M. Yotebieng,
E. Carter,
2021,
The Lancet. Microbe.
M. Egger,
M. Yotebieng,
R. Wilkinson,
2020,
Antimicrobial Agents and Chemotherapy.
Liliana K. Rutaihwa,
M. Egger,
M. Yotebieng,
2020,
Antimicrobial Agents and Chemotherapy.
Hansjakob Furrer,
Manuel Battegay,
Jacques Schrenzel,
2016,
Journal of Clinical Microbiology.
Peter M. Small,
Clifton E. Barry,
Sebastien Gagneux,
2007,
Journal of bacteriology.
C. Beisel,
M. Nicol,
S. Borrell,
2021,
The Lancet. Microbe.
S. Gagneux,
D. Yeboah-Manu,
I. Otchere,
2019,
PloS one.
Daniel J. Wilson,
Youwen Qin,
M. Inouye,
2022,
The Lancet. Microbe.
P. Ashton,
J. Gardy,
L. Rigouts,
2019,
Nature Reviews Microbiology.
Thomas R Rogers,
Stefan Niemann,
Enos Bernasconi,
2018,
The Lancet. Infectious diseases.
M. Segal,
P. Hopewell,
P. Nahid,
2018,
PloS one.
P. Wheeler,
S. Waddell,
S. Gordon,
2023,
Microbial genomics.
A. Ross,
S. Borrell,
A. Trauner,
2019,
Molecular biology and evolution.
S. Borrell,
S. Gagneux,
R. Kempker,
2022,
PloS one.
Ben C. Collins,
Sebastian M. Gygli,
R. Aebersold,
2021,
Antimicrobial agents and chemotherapy.
J. Parkhill,
L. Sánchez-Busó,
S. Harris,
2020,
bioRxiv.
S. Gagneux,
F. Menardo,
F. Freund,
2019,
bioRxiv.
L. Rigouts,
B. D. de Jong,
S. Niemann,
2018,
bioRxiv.
G. Schoolnik,
B. D. de Jong,
Benjamin Garcia,
2017,
Tuberculosis.
R. G. Hewinson,
Elena Hailu,
A. Aseffa,
2015,
Current Biology.
J. Hattendorf,
S. Borrell,
J. Feldmann,
2015,
PLoS neglected tropical diseases.
E. Efstathiadis,
R. Copin,
J. Ernst,
2014,
Vaccine.
M. Wenk,
G. Shui,
X. Guan,
2014,
MicrobiologyOpen.
J. Parkhill,
S. Niemann,
J. Bryant,
2014,
The Journal of antimicrobial chemotherapy.
Sonia Borrell,
Sebastien Gagneux,
I. Comas,
2014,
PloS one.
M. Imboden,
N. Probst-Hensch,
P. Bovet,
2016,
BMC Infectious Diseases.
Christine J. Boinett,
J. Parkhill,
W. Jacobs,
2019,
Nature Communications.
P. Rancoita,
S. Niemann,
C. Köser,
2021,
European Respiratory Journal.
Sebastian M. Gygli,
C. Beisel,
A. Ross,
2023,
Nature Communications.
Andries J. van Tonder,
J. Parkhill,
L. Sánchez-Busó,
2018,
bioRxiv.
A. Ross,
S. Borrell,
A. Trauner,
2019,
bioRxiv.
S. Gagneux,
2001
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G. Pluschke,
S. Gagneux,
A. Hodgson,
2007,
Vaccine.
J. Fellay,
K. Reither,
S. Gagneux,
2022,
Frontiers in Medicine.
K. Reither,
S. Gagneux,
D. Portevin,
2022,
medRxiv.
Stavroula K. Hatzios,
M. Nsereko,
E. Mupere,
2015,
BMC Infectious Diseases.
Stavroula K. Hatzios,
M. Nsereko,
E. Mupere,
2015
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D. van Soolingen,
D. Brites,
S. Gagneux,
2021,
Open research Europe.
F. van Leth,
S. Niemann,
K. Dheda,
2023,
The Lancet. Infectious diseases.
A. Gabrielian,
A. Rosenthal,
M. Torres-Puente,
2021,
Nature communications.
A. Gabrielian,
A. Rosenthal,
M. Torres-Puente,
2021,
Nature Communications.
R. D. Bruce,
K. Reither,
J. Mbwambo,
2021,
PloS one.
G. Pluschke,
S. Borrell,
S. Gagneux,
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