A. Jong

发表

Protein costs do not explain evolution of metabolic strategies and regulation of ribosomal content: does protein investment explain an anaerobic bacterial Crabtree effect?

W. M. Vos, B. Teusink, M. Giera, 2015, Molecular microbiology.

University of Groningen Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens Omony,

O. Kuipers, A. Jong, J. Omony, 2018 .

Groningen The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG 1363 during Growth in Milk

O. Kuipers, J. Kok, A. Jong, 2018 .

Development and use of genomics mining and visualization tools for prokaryotes

A. Jong, 2012 .

Glucose limitation in Lactococcus shapes a single-peaked fitness landscape exposing membrane occupancy as a constraint

F. Bruggeman, B. Teusink, D. Molenaar, 2017, bioRxiv.

University of Groningen CD 1 c presentation of synthetic glycolipid antigens with foreign alkyl branching motifs

B. Feringa, D. Moody, A. Minnaard, 2017 .

Activation of human T cells by CD1 and self‐lipids

A. Jong, 2015 .

CD1b Tetramers Bind \(\alpha \beta \) T Cell Receptors to Identify a Mycobacterial Glycolipid-Reactive T Cell Repertoire in Humans

I. Wilson, J. Altman, A. Schiefner, 2011 .

Alopecia areata is driven by cytotoxic T lymphocytes and is reversed by JAK inhibition

A. Christiano, A. Jong, C. Higgins, 2014, Nature Medicine.

Data resources and mining tools for reconstructing gene regulatory networks in Lactococcus lactis

O. Kuipers, J. Kok, A. Jong, 2011 .

Epstein-Barr Virus Large Tegument Protein BPLF 1 Contributes to Innate Immune Evasion through Interference with Toll-Like Receptor Signaling

Steven G. E. Braem, E. Kremmer, M. Ressing, 2014 .

UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons

Oscar P. Kuipers, Sacha A. F. T. van Hijum, Jan Kok, 2003, Bioinform..

University of Groningen Development of genomic array footprinting for identification of conditionally essential genes in Streptococcus pneumoniae Bijlsma,

O. Kuipers, A. Jong, J. Bijlsma, 2007 .

Proteasome regulates T lymphocyte metabolism and fate specification

John T. Chang, Aaron N. Chang, J. Yates, 2017 .

University of Groningen CD 1 c tetramers detect ex vivo T cell responses to processed phosphomycoketide

E. Adams, W. Jacobs, J. Altman, 2017 .

truncated Bacillus signal peptidase

S. Bron, G. Venemâ, A. Jong, 2001 .

CD1 Antigen Presentation and Autoreactivity in the Pregnant Human Uterus

J. Strominger, D. Moody, A. Jong, 2015, American journal of reproductive immunology.

Proteasomal splicing creates a novel type of antigen containing an isopeptide linkage

K. Schuurman, A. Jong, C. Berkers, 2010 .

Signal peptidase I overproduction results in increased efficiencies of export and maturation of hybrid secretory proteins inEscherichia coli

S. Bron, G. Venemâ, J. M. Dijl, 1991, Molecular and General Genetics MGG.

Genome Exploitation and Bioinformatics Tools

O. Kuipers, A. Jong, A. J. Heel, 2011 .

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

Oscar P. Kuipers, Jan Kok, Anne de Jong, 2018, Nucleic Acids Res..

BAGEL: a web-based bacteriocin genome mining tool

Oscar P. Kuipers, Sacha A. F. T. van Hijum, Jan Kok, 2006, Nucleic Acids Res..

Signal peptidase loverproduction results in increased efficiencies of export and maturation of hybrid secretory proteins in Escherichia coli

S. Bron, J. M. Dijl, A. Jong, 2002 .

The endogenous Bacillus subtilis (natto) plasmids pTA1015 and pTA1040 contain signal peptidase‐encoding genes: identification of a new structural module on cryptic plasmids

Jan Maarten van Dijl, S. Bron, H. Tjalsma, 1995, Molecular microbiology.

Protein secretion in Bacillus subtilis: characterisation of randomly selected signal-sequence-coding regions

S. Bron, G. Venemâ, J. M. Dijl, 1989 .

αβ T cell antigen receptor recognition of CD1a presenting self lipid ligands

Jamie Rossjohn, Tan-Yun Cheng, J. Rossjohn, 2015, Nature Immunology.

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

Oscar P. Kuipers, Jan Kok, Anne de Jong, 2013, Nucleic Acids Res..

Inhibition of Protein Ubiquitination by Paraquat and 1-Methyl-4-Phenylpyridinium Impairs Ubiquitin-Dependent Protein Degradation Pathways

H. Ovaa, R. Franco, Juliana Navarro-Yepes, 2016, Molecular Neurobiology.

T cell immunity against early antigens of Human Papillomavirus type 16

A. Jong, 2005 .

Two Distinct Types of E3 Ligases Work in Unison to Regulate Substrate Ubiquitylation

J. Harper, J. Paulo, H. Ovaa, 2016, Cell.

University of Groningen Identification of Differentially Expressed Genes during Bacillus subtilis Spore Outgrowth in High-Salinity Environments Using RNA Sequencing

O. Kuipers, E. Bremer, K. Madela, 2019 .

Signal peptidase I of Bacillus subtilis: patterns of conserved amino acids in prokaryotic and eukaryotic type I signal peptidases.

S. Bron, J. Vehmaanperä, G. Venemâ, 1992, The EMBO journal.

Presentation by MHC Class I Molecules Rules for High-Efficiency Spliced Peptide Definition of Proteasomal Peptide Splicing

T. Schumacher, B. Rodenko, H. Ovaa, 2015 .

How the proteasome cleaves and religates peptides to expand the antigen repertoire

T. Schumacher, K. Schuurman, A. Jong, 2010 .

Protein transport pathways in Bacillus subtilis: a genome-based road map

Anne de Jong, Sierd Bron, S. Bron, 2001 .

FUNAGE-Pro: comprehensive web server for gene set enrichment analysis of prokaryotes

O. Kuipers, J. Kok, A. Jong, 2022, Nucleic Acids Res..

BAGEL2: mining for bacteriocins in genomic data

Oscar P. Kuipers, Jan Kok, Anne de Jong, 2010, Nucleic Acids Res..

AguR is a transmembrane transcription activator of the putrescine biosynthesis operon in Lactococcus lactis, and acts in response to agmatine

O. Kuipers, V. Ladero, B. Redruello, 2015 .

Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism

J. Kok, A. Jong, S. V. D. Meulen, 2018 .

SporeWeb: an interactive journey through the complete sporulation cycle of Bacillus subtilis

Oscar P. Kuipers, Anne de Jong, Robyn T. Eijlander, 2013, Nucleic Acids Res..

Elucidating the mechanism by which synthetic helper peptides sensitize Pseudomonas aeruginosa to multiple antibiotics

O. Kuipers, R. Cebrián, A. Jong, 2021, PLoS pathogens.

University of Groningen Plasmid Complement of Lactococcus lactis NCDO 712 Reveals a Novel Pilus Gene Cluster

R. Siezen, J. Kok, H. Bachmann, 2016 .

CD1c bypasses lysosomes to present a lipopeptide antigen with 12 amino acids

J. Katz, I. van Rhijn, D. Moody, 2009, The Journal of experimental medicine.

Human T cell response to CD1a and contact dermatitis allergens in botanical extracts and commercial skin care products

J. Rossjohn, R. Cotton, I. van Rhijn, 2020, Science Immunology.

A conserved human T cell population targets mycobacterial antigens presented by CD1b

Jamie Rossjohn, J. Altman, N. de Vries, 2013, Nature Immunology.

The Journal of Experimental Medicine CORRESPONDENCE

I. Wilson, J. Altman, A. Schiefner, 2005 .

CD1a selectively captures endogenous cellular lipids that broadly block T cell response

G. Besra, J. Altman, G. Ogg, 2021, The Journal of experimental medicine.

Characterization of signal-sequence-coding regions selected from the Bacillus subtilis chromosome.

S. Bron, G. Venemâ, A. Jong, 1988, Gene.

Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases

Morris A. Swertz, Ritsert C. Jansen, Oscar P. Kuipers, 2004, Bioinform..

Faculty Opinions recommendation of Pathogen-induced human TH17 cells produce IFN-γ or IL-10 and are regulated by IL-1β.

D. Moody, A. Jong, 2012 .