Lydie Lane

发表

Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function.

G. Omenn, Yu‐Ju Chen, J. LaBaer, 2018, Journal of proteome research.

Progress on Identifying and Characterizing the Human Proteome: 2018-2019 Metrics from the HUPO Human Proteome Project.

G. Omenn, E. Deutsch, J. Schwenk, 2019, Journal of proteome research.

neXtProt: organizing protein knowledge in the context of human proteome projects.

A. Bairoch, P. Gaudet, Isabelle Cusin, 2013, Journal of proteome research.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

Julia Koehler Leman, Jose M. Duarte, David L. Masica, 2017 .

N‐terminome analysis of the human mitochondrial proteome

Alvaro Sebastian Vaca Jacome, A. Bairoch, T. Rabilloud, 2015, Proteomics.

Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.

A. Nesvizhskii, G. Omenn, E. Deutsch, 2015, Journal of proteome research.

Human Spermatozoa as a Model for Detecting Missing Proteins in the Context of the Chromosome-Centric Human Proteome Project.

C. Pineau, N. Sergeant, Lydie Lane, 2015, Journal of proteome research.

DERA is the human deoxyribose phosphate aldolase and is involved in stress response.

Amos Bairoch, Lydie Lane, Camille Mary, 2014, Biochimica et biophysica acta.

Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly

C. L. Wee, E. Petretto, L. Tucker-Kellogg, 2020, Nature Communications.

BRAWNIN: A sORF-encoded Peptide Essential for Vertebrate Mitochondrial Complex III Assembly

C. L. Wee, E. Petretto, L. Tucker-Kellogg, 2020, bioRxiv.

Down-Regulation of ECRG4, a Candidate Tumor Suppressor Gene, in Human Breast Cancer

Lydie Lane, Daniel Birnbaum, Jean-Paul Borg, 2011, PloS one.

Protein variety and functional diversity: UniProtKB/Swiss-Prot annotation in its biological context

A. Bairoch, B. Roechert, B. Boeckmann, 2008 .

Protein variety and functional diversity: Swiss-Prot annotation in its biological context.

Marie-Claude Blatter, Amos Bairoch, Lydie Lane, 2005, Comptes rendus biologies.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Juan Antonio Vizcaíno, Yassene Mohammed, Ekaterina Mostovenko, 2015, Journal of proteome research.

Exploring the Uncharacterized Human Proteome Using neXtProt.

Amos Bairoch, Alain Gateau, Lydie Lane, 2018, Journal of proteome research.

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins.

Amos Bairoch, Emma Lundberg, Lydie Lane, 2014, Journal of proteome research.

Research on The Human Proteome Reaches a Major Milestone: >90% of Predicted Human Proteins Now Credibly Detected, according to the HUPO Human Proteome Project.

Eric W. Deutsch, Nuno Bandeira, Ruedi Aebersold, 2020, Journal of proteome research.

Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications.

Lydie Lane, Eric W Deutsch, Gilbert S Omenn, 2016, Journal of proteome research.

Combining bioinformatics and MS-based proteomics: clinical implications

Lydie Lane, Adelina E. Acosta-Martin, 2014, Expert review of proteomics.

Validating Missing Proteins in Human Sperm Cells by Targeted Mass-Spectrometry- and Antibody-based Methods.

C. Lindskog, C. Pineau, F. Delalande, 2017, Journal of proteome research.

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.

Lydie Lane, Eric W Deutsch, Gilbert S Omenn, 2018, Journal of proteome research.

Advances in Identifying and Characterizing the Human Proteome.

G. Omenn, E. Deutsch, C. Overall, 2019, Journal of proteome research.

Integrin-Mediated Signaling Induced by Simian Virus 40 Leads to Transient Uncoupling of Cortical Actin and the Plasma Membrane

A. Bairoch, D. Bumann, Lydie Lane, 2018 .

What will neXtProt help us achieve in 2020 and beyond?

M. Zahn-Zabal, Lydie Lane, 2020, Expert review of proteomics.

Proteomic analysis of podocyte exosome-enriched fraction from normal human urine.

Lydie Lane, Pierre Lescuyer, Marco Prunotto, 2013, Journal of proteomics.

Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.

Thibault Robin, Alain Gateau, Lydie Lane, 2016, Journal of proteome research.

C11orf83, a Mitochondrial Cardiolipin-Binding Protein Involved in bc1 Complex Assembly and Supercomplex Stabilization

A. Bairoch, M. Foti, J. Martinou, 2015, Molecular and Cellular Biology.

C2orf62 and TTC17 Are Involved in Actin Organization and Ciliogenesis in Zebrafish and Human

A. Bairoch, C. Pineau, J. Borg, 2014, PloS one.

Missing Protein Landscape of Human Chromosomes 2 and 14: Progress and Current Status.

A. Bairoch, Lydie Lane, Y. Vandenbrouck, 2016, Journal of proteome research.

The 2022 Report on the Human Proteome from the HUPO Human Proteome Project.

R. Aebersold, C. Lindskog, R. Moritz, 2022, Journal of proteome research.

Systems Proteomics View of the Endogenous Human Claudin Protein Family.

S. Ranganathan, N. Kelleher, E. Lundberg, 2016, Journal of proteome research.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Eric W. Deutsch, Nuno Bandeira, Lydie Lane, 2019, bioRxiv.

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

Olivier Sallou, Frédéric Chalmel, Lydie Lane, 2016, Database J. Biol. Databases Curation.

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students

Amos Bairoch, Monique Zahn-Zabal, Lydie Lane, 2021, Database J. Biol. Databases Curation.

Advances in the Chromosome-Centric Human Proteome Project: looking to the future

Lydie Lane, William S Hancock, Gilbert S Omenn, 2017, Expert review of proteomics.

Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.

Lydie Lane, G. Omenn, E. Deutsch, 2017, Journal of proteome research.

The neXtProt knowledgebase on human proteins: current status

Ying Zhang, Amos Bairoch, Alain Gateau, 2014, Nucleic Acids Res..

Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly

C. L. Wee, E. Petretto, L. Tucker-Kellogg, 2020, Nature Communications.

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression

Paul T. Groth, Barend Mons, Amos Bairoch, 2014, J. Web Semant..

Worming into the uncharacterized human proteome.

Lydie Lane, P. Duek, 2019, Journal of proteome research.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

Elizabeth Brunk, Binghuang Cai, Yang Zhang, 2017, Genome Medicine.

The Functionally Unannotated Proteome of Human Male Tissues: A Shared Resource to Uncover New Protein Functions Associated with Reproductive Biology.

C. Pineau, Lydie Lane, Y. Vandenbrouck, 2020, Journal of proteome research.

Progress Identifying and Analyzing the Human Proteome: 2021 Metrics from the HUPO Human Proteome Project.

R. Aebersold, C. Lindskog, R. Moritz, 2021, Journal of proteome research.

C21orf91 Regulates Oligodendroglial Precursor Cell Fate—A Switch in the Glial Lineage?

Lydie Lane, P. Duek, P. Küry, 2021, Frontiers in Cellular Neuroscience.

Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

Alain Gateau, Lydie Lane, Christophe Bruley, 2015, Journal of proteome research.

A community proposal to integrate proteomics activities in ELIXIR

Lennart Martens, Martin Eisenacher, Wout Bittremieux, 2017, F1000Research.

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase

Michel Schneider, Elisabeth Coudert, Kristian B. Axelsen, 2009, Database J. Biol. Databases Curation.

The neXtProt knowledgebase in 2020: data, tools and usability improvements

Amos Bairoch, Mathieu Schaeffer, Alain Gateau, 2019, Nucleic Acids Res..

A high-stringency blueprint of the human proteome

Rebekah L. Gundry, Joshua L. Justice, R. Aebersold, 2020, Nature Communications.

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Harald Barsnes, Martin Eisenacher, Yasset Perez-Riverol, 2019, bioRxiv.

Proteomics Standards Initiative Extended FASTA Format (PEFF)

Harald Barsnes, Martin Eisenacher, Yasset Perez-Riverol, 2019, bioRxiv.

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program.

Michel Schneider, Amos Bairoch, Damien Lieberherr, 2009, Journal of proteomics.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Correction to "Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project".

Markus Müller, F. Lisacek, A. Bairoch, 2019, Journal of proteome research.

The neXtProt knowledgebase on human proteins: 2017 update

Amos Bairoch, Mathieu Schaeffer, Alain Gateau, 2016, Nucleic Acids Res..

Deep Dive on the Proteome of Human Cerebrospinal Fluid: A Valuable Data Resource for Biomarker Discovery and Missing Protein Identification.

Loïc Dayon, Lydie Lane, Antonio Núñez Galindo, 2018, Journal of proteome research.

Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project.

G. Omenn, E. Deutsch, J. Schwenk, 2018, Journal of proteome research.

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

Lennart Martens, Henning Hermjakob, Ruedi Aebersold, 2016, Journal of proteome research.

The neXtProt peptide uniqueness checker: a tool for the proteomics community

Mathieu Schaeffer, Alain Gateau, Daniel Dinis Teixeira, 2017, Bioinform..

A Blinded Testing of Function Annotation for uPE1 Proteins by the I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge.

Lydie Lane, Yang Zhang, Chengxin Zhang, 2019, Journal of proteome research.

Toward Completion of the Human Proteome Parts List: Progress Uncovering Proteins That Are Missing or Have Unknown Function and Developing Analytical Methods

Lydie Lane, Eric W Deutsch, Gilbert S Omenn, 2018, Journal of proteome research.

neXtProt: a knowledge platform for human proteins

Amos Bairoch, Alain Gateau, Lydie Lane, 2011, Nucleic Acids Res..

Update of the Functional Mitochondrial Human Proteome Network.

Lydie Lane, M. Fasano, C. Monti, 2018, Journal of proteome research.

Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project.

Amos Bairoch, Frédérique Lisacek, Thibault Robin, 2018, Journal of proteome research.

Identification of Missing Proteins in Normal Human Cerebrospinal Fluid.

L. Dayon, Lydie Lane, A. Núñez Galindo, 2018, Journal of proteome research.

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support

Christian von Mering, Ron D. Appel, Evgeny M. Zdobnov, 2014, Nucleic Acids Res..

Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway

A. Bairoch, D. Bumann, Lydie Lane, 2012, PloS one.

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Wout Bittremieux, Yasset Perez-Riverol, Eric W. Deutsch, 2020, EuPA Open Proteomics.

A Preliminary Study on the Prediction of Human Protein Functions

Guido Bologna, Anne-Lise Veuthey, Amos Bairoch, 2011, IWINAC.

Converting neXtProt into Linked Data and nanopublications

Barend Mons, Amos Bairoch, Oliver Karch, 2015, Semantic Web.

6.13 – Databases and Datasources at SIB, Swiss Institute of Bioinformatics

Ron D. Appel, Alan Bridge, Ioannis Xenarios, 2014 .

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework

Jose M. Duarte, Sheila M. Reynolds, G. Barton, 2017, Genome Medicine.

Devising a Consensus Framework for Validation of Novel Human Coding Loci.

Jennifer Harrow, Lydie Lane, Elspeth A Bruford, 2015, Journal of proteome research.

Launching the C-HPP neXt-CP50 Pilot Project for Functional Characterization of Identified Proteins with No Known Function.

G. Omenn, Yu‐Ju Chen, J. LaBaer, 2018, Journal of proteome research.

DERA is the human deoxyribose phosphate aldolase and is involved in stress response.

A. Bairoch, Lydie Lane, N. Fischer, 2014, Biochimica et biophysica acta.

Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.

A. Nesvizhskii, G. Omenn, E. Deutsch, 2015, Journal of proteome research.

Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project.

Cheryl F. Lichti, S. Ranganathan, Y. Guan, 2015, Journal of proteome research.

Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation

David L. Masica, Sheila M. Reynolds, Hagen U. Tilgner, 2022 .

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Joshua L. Payne, Christian J. A. Sigrist, Brian J. Stevenson, 2015, Nucleic Acids Res..