T. Hase

发表

Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry

Ben C. Collins, H. Kitano, R. Aebersold, 2017, Cell reports.

A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data

L. J. K. Wee, H. Kitano, See-Kiong Ng, 2016, BMC Genomics.

Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes

Hiroshi Tanaka, Takeshi Hase, Yoshihito Niimura, 2010, BMC Evolutionary Biology.

A Dual Controllability Analysis of Influenza Virus-Host Protein-Protein Interaction Networks for Antiviral Drug Target Discovery

Emily E. Ackerman, J. Alcorn, J. Shoemaker, 2018, bioRxiv.

H. Kato, H. Saji, H. Koizumi, 2020, Scientific Reports.

Identification of drug-target modules in the human protein–protein interaction network

H. Kitano, Samik Ghosh, Hiroshi Tanaka, 2014, Artificial Life and Robotics.

Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways

Samik Ghosh, Yukiko Matsuoka, Hiroaki Kitano, 2016, npj Systems Biology and Applications.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2021, Nature Communications.

A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery

Emily E. Ackerman, J. Alcorn, J. Shoemaker, 2018, bioRxiv.

A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery

Emily E Ackerman, John F Alcorn, Takeshi Hase, 2018, BMC Bioinformatics.

Structure of Protein Interaction Networks and Their Implications on Drug Design

Hiroaki Kitano, Hiroshi Tanaka, Yasuhiro Suzuki, 2009, PLoS Comput. Biol..

A comprehensive map of the influenza A virus replication cycle

Samik Ghosh, Yukiko Matsuoka, Hiroaki Kitano, 2013, BMC Systems Biology.

Polysulfide Serves as a Hallmark of Desmoplastic Reaction to Differentially Diagnose Ductal Carcinoma In Situ and Invasive Breast Cancer by SERS Imaging

T. Hase, T. Hishiki, M. Wakui, 2023, Antioxidants.

Protein-Protein Interaction Networks: Structures, Evolution, and Application to Drug Design

Takeshi Hase, Yoshihito Niimura, Y. Niimura, 2012 .

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Amir K. Foroushani, Yuanfang Guan, Jaewoo Kang, 2019, Nature Communications.

Molecular Evolutionary Analysis of Yeast Protein Interaction Network

S. Ogishima, Hiroshi Tanaka, S. Nakagawa, 2007 .

A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data

L. J. K. Wee, H. Kitano, See-Kiong Ng, 2016, BMC Genomics.

Neural network embedding of functional microconnectome

M. Shimono, T. Hase, Yuki Yamaguchi, 2021, bioRxiv.

Origin and evolution of genes related to ABA metabolism and its signaling pathways

K. Shinozaki, Kousuke Hanada, Tetsuro Toyoda, 2011, Journal of Plant Research.

Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer’s disease

Samik Ghosh, Hiroaki Kitano, Kazuro Shimokawa, 2020, Alzheimer's Research & Therapy.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

The Specificity of Topology of the Protein-Protein Interactions in Yeast and Its Biological Characteristics

Hiroshi Tanaka, S. Nakagawa, T. Hase, 2005 .

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks

Samik Ghosh, Hiroaki Kitano, Ryota Yamanaka, 2013, PLoS Comput. Biol..

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2022 .

Non-Uniform Survival Rate of Heterodimerization Links in the Evolution of the Yeast Protein-Protein Interaction Network

Hiroshi Tanaka, Tsuguchika Kaminuma, Takeshi Hase, 2008, PloS one.

13. Cancer Network Medicine

H. Kitano, Samik Ghosh, T. Hase, 2017 .