J. Shanks

发表

Re-examination of metabolic fluxes in Escherichia coli during anaerobic fermentation of glucose using 13C labeling experiments and 2-dimensional nuclear magnetic resonance (NMR) spectroscopy

J. Yoon, R. Gonzalez, Madhuresh K. Choudhary, 2011 .

Transcriptomic Analysis of Carboxylic Acid Challenge in Escherichia coli: Beyond Membrane Damage

L. Jarboe, J. Dickerson, Ping-huai Liu, 2014, PloS one.

Evolution for exogenous octanoic acid tolerance improves carboxylic acid production and membrane integrity.

L. Jarboe, J. Yoon, J. Shanks, 2015, Metabolic engineering.

Transcriptional response of the terpenoid indole alkaloid pathway to the overexpression of ORCA3 along with jasmonic acid elicitation of Catharanthus roseus hairy roots over time.

K. San, J. Shanks, C. Peebles, 2009, Metabolic engineering.

CrBPF1 overexpression alters transcript levels of terpenoid indole alkaloid biosynthetic and regulatory genes

J. Shanks, G. Sander, C. Li, 2015, Front. Plant Sci..

Engineering Escherichia coli membrane phospholipid head distribution improves tolerance and production of biorenewables.

Yingxi Chen, Jong Moon Yoon, Jeffery B. Klauda, 2017, Metabolic engineering.

The ORCA2 transcription factor plays a key role in regulation of the terpenoid indole alkaloid pathway

J. Shanks, G. Sander, C. Li, 2013, BMC Plant Biology.

An integrated computational and experimental study for overproducing fatty acids in Escherichia coli.

Ali R. Zomorrodi, Anupam Chowdhury, Costas D Maranas, 2012, Metabolic engineering.

Improvements in metabolic flux analysis using carbon bond labeling experiments: bondomer balancing and Boolean function mapping.

Ganesh Sriram, Jacqueline V Shanks, J. Shanks, 2004, Metabolic engineering.

Metabolic engineering with plants for a sustainable biobased economy.

Le Zhao, Jong Moon Yoon, Jacqueline V Shanks, 2013, Annual review of chemical and biomolecular engineering.

Enhanced algal growth rate in a Taylor vortex reactor

R. D. Vigil, J. Shanks, Bo Kong, 2013, Biotechnology and bioengineering.

Quantification of Compartmented Metabolic Fluxes in Developing Soybean Embryos by Employing Biosynthetically Directed Fractional 13C Labeling, Two-Dimensional [13C, 1H] Nuclear Magnetic Resonance, and Comprehensive Isotopomer Balancing1[w]

Ganesh Sriram, Jacqueline V Shanks, M. Westgate, 2004, Plant Physiology.

Innovating a Nonconventional Yeast Platform for Producing Shikimate as the Building Block of High-Value Aromatics.

J. Shanks, M. Suástegui, Mingfeng Cao, 2017, ACS synthetic biology.

Flux quantification in central carbon metabolism of Catharanthus roseus hairy roots by 13C labeling and comprehensive bondomer balancing.

J. Shanks, G. Sriram, D. Fulton, 2007, Phytochemistry.

Comparison of intracellular sugar-phosphate levels from 31P nmr spectroscopy of intact cells and cell-free extracts.

J E Bailey, J. Bailey, J. Galazzo, 1990, Biotechnology and bioengineering.

Elucidation of the cytoplasmic and vacuolar components in the inorganic phosphate region in the 31P NMR spectrum of yeast

J. Bailey, J. Shanks, 1990, Biotechnology and bioengineering.

Linear Hydrocarbon Producing Pathways in Plants, Algae and Microbes

J. Shanks, Mark Brown, 2012 .

Transient studies of nutrient uptake, growth, and indole alkaloid accumulation in heterotrophic cultures of hairy roots of Catharanthus roseus.

J. Shanks, R. Bhadra, 1997, Biotechnology and bioengineering.

Transformation of TNT by Aquatic Plants and Plant Tissue Cultures

J. Hughes, J. Lauritzen, J. Shanks, 1997 .

Studies on plant-mediated fate of the explosives RDX and HMX.

R. K. Williams, J. Hughes, J. Shanks, 2001, Chemosphere.

A Transient Study of Formation of Conjugates during TNT Metabolism by Plant Tissues

J. Hughes, J. Lauritzen, J. Shanks, 1999 .

Characterization of an Ethanol‐Inducible Promoter System in Catharanthusroseus Hairy Roots

K. San, J. Shanks, C. Peebles, 2007, Biotechnology progress.

Phytotransformation of trinitrotoluene (TNT) and distribution of metabolic products in Myriophyllum aquaticum

J. Hughes, J. Shanks, M. Vanderford, 1997, Biotechnology Letters.

Enhanced Transformation of TNT by Tobacco Plants Expressing a Bacterial Nitroreductase

J. Murray, N. Bruce, S. Rosser, 2007, International journal of phytoremediation.

Phytotoxicity and phytoremediation of 2,6-dinitrotoluene using a model plant, Arabidopsis thaliana.

J. Yoon, D. Oliver, J. Shanks, 2007, Chemosphere.

Engineering of E. coli inherent fatty acid biosynthesis capacity to increase octanoic acid production

L. Jarboe, C. Maranas, J. Yoon, 2018, Biotechnology for Biofuels.

The expression of 1-deoxy-D-xylulose synthase and geraniol-10-hydroxylase or anthranilate synthase increases terpenoid indole alkaloid accumulation in Catharanthus roseus hairy roots.

K. San, J. Shanks, C. Peebles, 2011, Metabolic engineering.

The effects of UV‐B stress on the production of terpenoid indole alkaloids in Catharanthus roseus hairy roots

K. San, J. Shanks, C. Peebles, 2009, Biotechnology progress.

Plant 'hairy root' culture.

J. Shanks, J. Morgan, John A. Morgan, 1999, Current opinion in biotechnology.

Effect of Elicitor Dosage and Exposure Time on Biosynthesis of Indole Alkaloids by Catharanthus roseus Hairy Root Cultures

J. Shanks, S. K. Rijhwani, Sushil K. Rijhwani, 1998, Biotechnology progress.

Determination of metabolic rate-limitations by precursor feeding in Catharanthus roseus hairy root cultures.

J. Shanks, J. Morgan, John A. Morgan, 2000, Journal of biotechnology.

Plant Metabolic Engineering—Entering the S Curve

A. Hanson, J. Shanks, 2002 .

Biochemical engineering. Bridging the gap between gene and product.

G. Stephanopoulos, J. Shanks, 2000, Current opinion in biotechnology.

Terpenoid indole alkaloid production by Catharanthus roseus hairy roots induced by Agrobacterium tumefaciens harboring rol ABC genes.

K. San, J. Shanks, Seung-Beom Hong, 2006, Biotechnology and bioengineering.

Confirmation of conjugation processes during TNT metabolism by axenic plant roots

J. Hughes, J. Shanks, R. Bhadra, 1999 .

Expression of tabersonine 16‐hydroxylase and 16‐hydroxytabersonine‐O‐methyltransferase in Catharanthus roseus hairy roots

J. Shanks, C. Peebles, Zengyi Shao, 2018, Biotechnology and bioengineering.

Production of indole alkaloids by selected hairy root lines of Catharanthus roseus

J. Shanks, R. Bhadra, S. Vani, 1993, Biotechnology and bioengineering.

Anticancer Drugs

J. Shanks, Le Zhao, 2018 .

Strategies and Challenges in Metabolic Engineering a

J E Bailey, J. Bailey, C. Khosla, 1990, Annals of the New York Academy of Sciences.

Determination of Biomass Composition of Catharanthusroseus Hairy Roots for Metabolic Flux Analysis

J. Shanks, G. Sriram, Omar González-Rivera, 2006, Biotechnology progress.

In vivo 31P and multilabel 13C NMR measurements for evaluation of plant metabolic pathways.

J. Shanks, C. Ho, S. K. Rijhwani, 1999, Metabolic engineering.

Role of Plants in the Transformation of Explosives

J. Shanks, M. Subramanian, 2004 .

Metabolic flux analysis of Escherichia coli MG1655 under octanoic acid (C8) stress

L. Jarboe, J. Yoon, Yanfen Fu, 2015, Applied Microbiology and Biotechnology.

Phytotransformation of 2,4‐Dinitrotoluene in Arabidopsis thaliana: Toxicity, Fate, and Gene Expression Studies in Vitro

J. Yoon, D. Oliver, J. Shanks, 2006, Biotechnology progress.

TNT Phytotransformation Pathway Characteristics in Arabidopsis: Role of Aromatic Hydroxylamines

Jacqueline V Shanks, D. Oliver, J. Shanks, 2006, Biotechnology progress.

Phytoremediation of RDX : Using Arabidopsis thaliana to Determine the Genetics and Biochemistry of the Transformation Pathway

D. Oliver, J. Shanks, H. Moon, 2004 .

Metabolic engineering of plants for alkaloid production.

J. Shanks, E. Hughes, 2002, Metabolic engineering.

Effects of initial medium pH on growth and metabolism ofCatharanthus roseus hairy root cultures —A study with31P and13C NMR spectroscopy

J. Shanks, Chih-huang Ho, 1992, Biotechnology Letters.

Quantification of metabolic flux in plant secondary metabolism by a biogenetic organizational approach.

Jacqueline V Shanks, John A Morgan, J. Shanks, 2002, Metabolic engineering.

Estimation of intracellular sugar phosphate concentrations in Saccharomyces cerevisiae using 31P nuclear magnetic resonance spectroscopy

J. Bailey, J. Shanks, 1988, Biotechnology and bioengineering.

Effects of terpenoid precursor feeding on Catharanthus roseus hairy roots over‐expressing the alpha or the alpha and beta subunits of anthranilate synthase

K. San, J. Shanks, Seung-Beom Hong, 2006, Biotechnology and bioengineering.

Expression of a feedback‐resistant anthranilate synthase in Catharanthus roseus hairy roots provides evidence for tight regulation of terpenoid indole alkaloid levels

K. San, J. Shanks, Seung-Beom Hong, 2004, Biotechnology and bioengineering.

Metabolic engineering of the indole pathway in Catharanthus roseus hairy roots and increased accumulation of tryptamine and serpentine.

K. San, J. Shanks, Seung-Beom Hong, 2004, Metabolic engineering.

Expression of the Arabidopsis feedback-insensitive anthranilate synthase holoenzyme and tryptophan decarboxylase genes in Catharanthus roseus hairy roots.

K. San, J. Shanks, Seung-Beom Hong, 2006, Journal of biotechnology.

Membrane engineering via trans unsaturated fatty acids production improves Escherichia coli robustness and production of biorenewables.

Jong Moon Yoon, Jacqueline V Shanks, L. Jarboe, 2016, Metabolic engineering.

Metabolic flux maps comparing the effect of temperature on protein and oil biosynthesis in developing soybean cotyledons.

M. Westgate, J. Shanks, G. Sriram, 2008, Plant, cell & environment.

Influence of carbon to nitrogen ratios on soybean somatic embryo (cv. Jack) growth and composition

J. Yoon, J. Shanks, J. Everard, 2013, Journal of experimental botany.

Effects of buffered media upon growth and alkaloid production of Catharanthus roseus hairy roots

J. Shanks, J. Morgan, C. Barney, 2000, Applied Microbiology and Biotechnology.

Inhibitor studies of tabersonine metabolism in C. roseus hairy roots.

J. Shanks, J. Morgan, 1999, Phytochemistry.

Perspectives of the metabolic engineering of terpenoid indole alkaloids in Catharanthus roseus hairy roots.

J. Shanks, Le Zhao, Guy W Sander, 2013, Advances in biochemical engineering/biotechnology.

The role of the octadecanoid pathway in the production of terpenoid indole alkaloids in Catharanthus roseus hairy roots under normal and UV-B stress conditions.

K. San, J. Shanks, C. Peebles, 2009, Biotechnology and bioengineering.

Characterization of an Inducible Promoter System in Catharanthus roseus Hairy Roots

K. San, J. Shanks, Seung-Beom Hong, 2002, Biotechnology progress.

Phytoremediation and Plant Metabolism of Explosives and Nitroaromatic Compounds

J. Burken, J. Shanks, P. Thompson, 2000 .

Quantification of Metabolic Fluxes for Metabolic Engineering of Plant Products

J. Shanks, J. Morgan, R. Bhadra, 1999 .

Role of the Non‐Mevalonate Pathway in Indole Alkaloid Production by Catharanthus roseus Hairy Roots

K. San, J. Shanks, Seung-Beom Hong, 2003, Biotechnology progress.

In situ NMR systems.

J. Shanks, 2001, Current issues in molecular biology.

Effect of Subculture Cycle on Growth and Indole Alkaloid Production by Catharanthus roseus Hairy Root Cultures

J. Shanks, S. K. Rijhwani, 1998 .

Identification of hexose hydrolysis products in metabolic flux analytes: a case study of levulinic acid in plant protein hydrolysate.

J. Shanks, G. Sriram, Vidya V. Iyer, 2007, Metabolic engineering.

Improving Escherichia coli membrane integrity and fatty acid production by expression tuning of FadL and OmpF

L. Jarboe, J. Yoon, J. Shanks, 2017, Microbial Cell Factories.

Comparison of suspended and immobilized yeast metabolism using 31P nuclear magnetic resonance spectroscopy

J. Bailey, J. Galazzo, J. Shanks, 1987 .

Bio-Based Industrial Products: Priorities for Research and Commercialization

John Pierce, Roger N. Beachy, T. Kent Kirk, 2000 .

Statistical design of the effect of inoculum conditions on growth of hairy root cultures of Catharanthus roseus

J. Shanks, R. Bhadra, 1995 .

Metabolic Flux Maps of Central Carbon Metabolismin Plant Systems

J. Shanks, G. Sriram, Vidya V. Iyer, 2007 .

Phytochemical engineering: Combining chemical reaction engineering with plant science

Jacqueline V. Shanks, J. Shanks, 2005 .

Metabolic Analysis of Wild-type Escherichia coli and a Pyruvate Dehydrogenase Complex (PDHC)-deficient Derivative Reveals the Role of PDHC in the Fermentative Metabolism of Glucose*

Ramon Gonzalez, Jacqueline V Shanks, Abhishek Murarka, 2010, The Journal of Biological Chemistry.

Transient studies of light-adapted cultures of hairy roots of Catharanthus roseus: growth and indole alkaloid accumulation.

J. Shanks, J. Morgan, R. Bhadra, 1998, Biotechnology and bioengineering.

Influence of Aeration on Cytoplasmic pH of Yeast in an NMR Airlift Bioreactor

J. Shanks, J V Shanks, B K Melvin, 1996, Biotechnology progress.

Systems metabolic engineering design: Fatty acid production as an emerging case study

Anupam Chowdhury, Costas D Maranas, Jacqueline V Shanks, 2014, Biotechnology and bioengineering.

Characterization of Oxidation Products of TNT Metabolism in Aquatic Phytoremediation Systems of Myriophyllum aquaticum

J. Hughes, J. Shanks, R. Spanggord, 1999 .

31P NMR and 13C NMR studies of recombinant Saccharomyces cerevisiae with altered glucose phosphorylation activities

J. E. Bailey, J. Bailey, J. Shanks, 1991 .

Comparison of wild‐type and Reg 1 mutant saccharomyces cerevisiae metabolic levels during glucose and galactose metabolism using 31P NMR

J. Bailey, J. Shanks, 1990, Biotechnology and bioengineering.

Redirection of Cellular Metabolism

J. Bailey, D. Axe, J. Galazzo, 1987, Annals of the New York Academy of Sciences.

Effect of sodium nitroprusside on growth and terpenoid indole alkaloid production in Catharanthus roseus hairy root cultures

K. San, J. Shanks, C. Peebles, 2011, Biotechnology progress (Print).

Transient Effects of Overexpressing Anthranilate Synthase α and β Subunits in Catharanthusroseus Hairy Roots

K. San, J. Shanks, Seung-Beom Hong, 2005 .

Transient effects of overexpressing anthranilate synthase alpha and beta subunits in Catharanthus roseus hairy roots.

K. San, J. Shanks, Seung-Beom Hong, 2005, Biotechnology progress.

Five year maintenance of the inducible expression of anthranilate synthase in Catharanthus roseus hairy roots.

K. San, J. Shanks, C. Peebles, 2009, Biotechnology and bioengineering.

13C-NMR studies of glucose metabolism in osmolarity mutants of Saccharomyces cerevisiae

M. Gustin, J. Shanks, M. Fernet, 1994 .

Genetic and Biochemical Basis for the Transformation of Energetic Materials (RDX, TNT, DNTs) by Plants

J. Shanks, 2007 .

Expression of tabersonine 16‐hydroxylase and 16‐hydroxytabersonine‐O‐methyltransferase in Catharanthus roseus hairy roots

J. Shanks, C. Peebles, Zengyi Shao, 2018, Biotechnology and Bioengineering.

Isotopomer measurement techniques in metabolic flux analysis I: nuclear magnetic resonance.

J. Yoon, J. Shanks, Q. Truong, 2014, Methods in molecular biology.