J. Hammond

发表

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

Timothy P. L. Smith, S. Koren, A. Phillippy, 2016, Immunogenetics.

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

Steven G. Schroeder, Timothy P. L. Smith, Maitreya J. Dunham, 2017, Nature Genetics.

Single-molecule sequencing and conformational capture enable de novo mammalian reference genomes

Timothy P. L. Smith, J. Shendure, S. Koren, 2016, bioRxiv.

Gene characterisation, isoforms and recombinant expression of carcinin, an antibacterial protein from the shore crab, Carcinus maenas.

V. Brockton, V. Smith, J. Hammond, 2007, Molecular immunology.

Novel Intersubunit Interaction Critical for HIV-1 Core Assembly Defines a Potentially Targetable Inhibitor Binding Pocket

D. Goodsell, A. Olson, S. Sarafianos, 2019, mBio.

Structural methods for studying IRES function.

J. Kieft, D. Costantino, J. Hammond, 2007, Methods in enzymology.

The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system

G. Maccari, J. Hammond, S. Marsh, 2019, Immunogenetics.

A vision of KIR variation at super resolution

M. Carrington, S. Khakoo, J. Hammond, 2016, Immunology.

A COVID-19 vaccine candidate using SpyCatcher multimerization of the SARS-CoV-2 spike protein receptor-binding domain induces potent neutralising antibody responses

R. Owens, Isabelle Dietrich, Anthony H Keeble, 2020, Nature Communications.

De novo assembly of the cattle reference genome with single-molecule sequencing

Steven G. Schroeder, Timothy P. L. Smith, S. Koren, 2020, GigaScience.

The structural basis of tRNA mimicry and conformational plasticity by a viral RNA

J. Kieft, D. Costantino, J. Nix, 2014, Nature.

The Veterinary Immunological Toolbox: Past, Present, and Future

J. Lunney, J. Hammond, J. Hope, 2020, Frontiers in Immunology.

Evaluation of the immunogenicity of prime-boost vaccination with the replication-deficient viral vectored COVID-19 vaccine candidate ChAdOx1 nCoV-19

R. Owens, Isabelle Dietrich, Katy Moffat, 2020, npj Vaccines.

Fc-Mediated Functions of Porcine IgG Subclasses

J. Schwartz, J. Sealy, P. Rijal, 2022, Frontiers in Immunology.

Evaluation of the immunogenicity of prime-boost vaccination with the replication-deficient viral vectored COVID-19 vaccine candidate ChAdOx1 nCoV-19

R. Owens, Isabelle Dietrich, Katy Moffat, 2020, npj Vaccines.

Cloning of a glycosylphosphatidylinositol-anchored alpha-2-macroglobulin cDNA from the ascidian, Ciona intestinalis, and its possible role in immunity.

V. Smith, J. Hammond, M. Nakao, 2005, Molecular immunology.

Peptide-Binding Repertoires HLA-A*02 Have Overlapping Patr-AL and Polymorphic Human Chimpanzee Peptide Binding Site, Conserved Although Divergent in Residues of the

M. Ronaghi, E. Adams, K. Garcia, 2011 .

Although Divergent in Residues of the Peptide Binding Site, Conserved Chimpanzee Patr-AL and Polymorphic Human HLA-A*02 Have Overlapping Peptide-Binding Repertoires

M. Ronaghi, E. Adams, K. Garcia, 2011, The Journal of Immunology.

Lipopolysaccharide induces DNA-synthesis in a sub-population of hemocytes from the swimming crab, Liocarcinus depurator.

V. Smith, J. Hammond, 2002, Developmental and comparative immunology.

Optimized Multicolour Immunofluorescence Panel for Cattle B Cell Phenotyping by an 8-Colour, 10-Parameter Panel

Katy Moffat, J. Hammond, Lindsay M. Fry, 2021, bioRxiv.

Exhibiting Both Nk Cell and T Cell Features Nonconventional T Cell Subset in Cattle Cells: a Novel + Cd3 + Nkp46

W. Morrison, J. Hammond, J. Hope, 2022 .

NKp46+CD3+ Cells: A Novel Nonconventional T Cell Subset in Cattle Exhibiting Both NK Cell and T Cell Features

W. Morrison, J. Hammond, J. Hope, 2014, The Journal of Immunology.

Protective porcine influenza virus-specific monoclonal antibodies recognize similar haemagglutinin epitopes as humans

J. Schwartz, Katy Moffat, R. Daniels, 2020, bioRxiv.

Low Dose Pig Anti-Influenza Virus Monoclonal Antibodies Reduce Lung Pathology but Do Not Prevent Virus Shedding

R. Daniels, J. McCauley, P. Rijal, 2021, bioRxiv.

Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species

P. Parham, T. Shiina, D. O’Connor, 2019, Immunogenetics.

Comparative MHC nomenclature: report from the ISAG/IUIS-VIC committee 2018

J. Kaufman, R. Bontrop, U. Grimholt, 2018, Immunogenetics.

IPD-MHC: nomenclature requirements for the non-human major histocompatibility complex in the next-generation sequencing era

R. Bontrop, N. D. de Groot, G. Maccari, 2018, Immunogenetics.

Nomenclature for the KIR of non-human species

P. Parham, R. Bontrop, N. D. de Groot, 2018, Immunogenetics.

Constraints on haplotype structure and variable gene frequencies suggest a functional hierarchy within cattle MHC class I

G. Codner, J. Birch, J. Hammond, 2012, Immunogenetics.

The functional significance of cattle major histocompatibility complex class I genetic diversity.

J. Hammond, S. Ellis, 2014, Annual review of animal biosciences.

Splicing Site Recognition by Synergy of Three Domains in Splicing Factor RBM10.

K. Wüthrich, P. Serrano, M. Geralt, 2018, Biochemistry.

GENE CHARACTERISATION , ISOFORMS AND RECOMBINANT EXPRESSION IN VITRO OF CARCININ , AN ANTIBACTERIAL PROTEIN FROM THE SHORE CRAB , CARCINUS MAENAS

V. Brockton, V. Smith, J. Hammond, 2006 .

AgonistLineages and Recognizes a Yeast-Derived TLR15 Is Unique to Avian and Reptilian

John R. Young, A. Boyd, J. Hammond, 2012 .

Cattle NK Cell Heterogeneity and the Influence of MHC Class I

S. Gubbins, J. Hammond, N. Sanderson, 2015, The Journal of Immunology.

Cattle Ly49 is polymorphic

J. Hammond, T. Connelley, S. Ellis, 2009, Immunogenetics.

Two Lineages of KLRA with Contrasting Transcription Patterns Have Been Conserved at a Single Locus during Ruminant Speciation

S. Gubbins, M. S. Gibson, J. Hammond, 2020, The Journal of Immunology.

Attenuation of Infectious Bronchitis Virus in Eggs Results in Different Patterns of Genomic Variation across Multiple Replicates

R. Orton, P. Britton, Sarah Keep, 2019, Journal of Virology.

The assembly and characterisation of two structurally distinct cattle MHC class I haplotypes point to the mechanisms driving diversity

J. Schwartz, J. Hammond, 2015, Immunogenetics.

Sewell, A. K. (2018). Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham

A. Sewell, John J Miles, G. Dolton, 2018 .

OMIP‐085: Cattle B‐cell phenotyping by an 8‐color panel

Katy Moffat, J. Hammond, Lindsay M. Fry, 2022, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

Molecular cloning and expression of leptin in gray and harbor seal blubber, bone marrow, and lung and its potential role in marine mammal respiratory physiology.

A. Hall, J. Hammond, M. Walton, 2005, American journal of physiology. Regulatory, integrative and comparative physiology.

The major histocompatibility complex homozygous inbred Babraham pig as a resource for veterinary and translational medicine

J. Schwartz, B. Charleston, J. Hammond, 2018, HLA.

Natural selection on marine carnivores elaborated a diverse family of classical MHC class I genes exhibiting haplotypic gene content variation and allelic polymorphism

P. Parham, P. Norman, J. Hammond, 2012, Immunogenetics.

Constraints on haplotype structure and variable gene frequencies suggest a functional hierarchy within cattle MHC class I

G. Codner, J. Birch, J. Hammond, 2012, Immunogenetics.

Identification and real-time PCR quantification of Phocine distemper virus from two colonies of Scottish grey seals in 2002.

P. Pomeroy, A. Hall, V. Smith, 2005, The Journal of general virology.

Comparison of polychlorinated biphenyl (PCB) induced effects on innate immune functions in harbour and grey seals.

A. Hall, J. Hammond, E. Dyrynda, 2005, Aquatic toxicology.

Common cancer in a wild animal: the California sea lion (Zalophus californianus) as an emerging model for carcinogenesis

A. Hall, F. Gulland, J. Hammond, 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

Evidence for a genetic basis of urogenital carcinoma in the wild California sea lion

A. Hall, J. Finlayson, M. Dagleish, 2014, Proceedings of the Royal Society B: Biological Sciences.

Highly‐contiguous bovine genomes underpin accurate functional analyses and updated nomenclature of MHC class I

J. Schwartz, G. Maccari, D. Heimeier, 2021, HLA.

Cattle MHC nomenclature: is it possible to assign sequences to discrete class I genes?

S. E. Marsh, C. Davies, J. Hammond, 2012, Immunogenetics.

Comparative MHC nomenclature: report from the ISAG/IUIS-VIC committee 2018

J. Kaufman, R. Bontrop, U. Grimholt, 2018, Immunogenetics.

Real-time PCR quantification of the in vitro effects of crustacean immunostimulants on gene expression in lobster (Homarus gammarus) granular haemocytes.

C. Hauton, V. Smith, J. Hammond, 2005, Developmental and comparative immunology.

Evolution and Survival of Marine Carnivores Did Not Require a Diversity of Killer Cell Ig-Like Receptors or Ly49 NK Cell Receptors1

P. Parham, L. Abi-Rached, J. Hammond, 2009, The Journal of Immunology.

Viral emergence in marine mammals in the North Pacific may be linked to Arctic sea ice reduction

B. Fadely, M. Rehberg, T. Gelatt, 2019, Scientific Reports.

TLR15 Is Unique to Avian and Reptilian Lineages and Recognizes a Yeast-Derived Agonist

John R. Young, A. Boyd, J. Hammond, 2012, The Journal of Immunology.

KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C

D. Bushnell, P. Parham, P. Norman, 2009, The Journal of experimental medicine.

Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes.

Ronald W Davis, Mostafa Ronaghi, Ronald W. Davis, 2009, Genome research.

The expanded cattle KIR genes are orthologous to the conserved single-copy KIR3DX1 gene of primates

P. Parham, L. Abi-Rached, J. Hammond, 2007, Immunogenetics.

Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates

P. Parham, D. O’Connor, R. Bontrop, 2019, Immunogenetics.

The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system

G. Maccari, J. Hammond, S. Marsh, 2019, Immunogenetics.

Nomenclature report 2019: major histocompatibility complex genes and alleles of Great and Small Ape and Old and New World monkey species

P. Parham, T. Shiina, D. O’Connor, 2019, Immunogenetics.

Nomenclature for the KIR of non-human species

P. Parham, R. Bontrop, N. D. de Groot, 2018, Immunogenetics.

A Survey of DDX21 Activity During Rev/RRE Complex Formation.

J. Williamson, D. Millar, L. Gerace, 2017, Journal of molecular biology.

IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex

James Robinson, Paul Flicek, Steven G. E. Marsh, 2016, Nucleic Acids Res..

Definition of the Cattle Killer Cell Ig–like Receptor Gene Family: Comparison with Aurochs and Human Counterparts

D. A. Magee, P. Parham, M. Watson, 2014, The Journal of Immunology.

Long-term adaptation of Ca2+-dependent behaviour in Paramecium tetraurelia.

R. R. Preston, J. Hammond, 1998, The Journal of experimental biology.

Multiple novel non-canonically transcribed sub-genomic mRNAs produced by avian coronavirus infectious bronchitis virus

Chandana Tennakoon, P. Britton, Richard C. Jones, 2020, The Journal of general virology.

Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham inbred pig

A. Sewell, John J Miles, G. Dolton, 2018, PLoS pathogens.

Identification of Amino Acids within Nonstructural Proteins 10 and 14 of the Avian Coronavirus Infectious Bronchitis Virus That Result in Attenuation In Vivo and In Ovo

P. Britton, Sarah Keep, J. Hammond, 2022, Journal of virology.

The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins

Isabelle Dietrich, Helena J. Maier, D. Bailey, 2020, bioRxiv.

Development of a RACE-based RNA-Seq approach to characterize the T-cell receptor repertoire of porcine γδ T cells.

J. Schwartz, W. Gerner, K. Mair, 2019, Developmental and comparative immunology.

Discrimination between Functional and Non-functional Cellular Gag Complexes Involved in HIV-1 Assembly.

B. Torbett, J. Williamson, D. Millar, 2021, Journal of molecular biology.

Development of polymorphic markers in the immune gene complex loci of cattle.

D. Bickhart, J. Schwartz, J. Young, 2021, Journal of dairy science.

Nomenclature report for killer-cell immunoglobulin-like receptors (KIR) in macaque species: new genes/alleles, renaming recombinant entities and IPD-NHKIR updates

P. Parham, D. O’Connor, R. Bontrop, 2019, Immunogenetics.

The role of the light chain in the structure and binding activity of two cattle antibodies that neutralize bovine respiratory syncytial virus

R. Owens, D. Stuart, G. Harris, 2019, Molecular immunology.

The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex

D. Bickhart, J. Schwartz, J. Hammond, 2019, Front. Immunol..

RNAseq Reveals the Contribution of Interferon Stimulated Genes to the Increased Host Defense and Decreased PPR Viral Replication in Cattle

J. Hammond, G. Dhinakar Raj, K. G. Tirumurugaan, 2020, Viruses.

The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation

S. Koren, A. Phillippy, D. Bickhart, 2016, bioRxiv.

Natural selection on marine carnivores elaborated a diverse family of classical MHC class I genes exhibiting haplotypic gene content variation and allelic polymorphism

P. Parham, P. Norman, J. Hammond, 2012, Immunogenetics.

Early HIV-1 Gag Assembly on Lipid Membrane with vRNA

J. Williamson, D. Millar, J. Hammond, 2023, bioRxiv.

The antibody loci of the domestic goat (Capra hircus)

D. Bickhart, J. Schwartz, J. Hammond, 2017, Immunogenetics.

Phenotypic and genetic analysis of "Chameleon," a paramecium mutant with an enhanced sensitivity to magnesium.

R. R. Preston, J. Hammond, J. Hammond, 1997, Genetics.

Isolation and characterization of magbane, a magnesium-lethal mutant of paramecium.

R. R. Preston, J. Hammond, 2001, Genetics.

IPD-MHC: nomenclature requirements for the non-human major histocompatibility complex in the next-generation sequencing era

R. Bontrop, N. D. de Groot, G. Maccari, 2018, Immunogenetics.

A DEAD-box protein acts through RNA to promote HIV-1 Rev-RRE assembly

J. Williamson, D. Millar, J. Hammond, 2017, Nucleic acids research.

Morbillivirus neutralising antibodies in Scottish grey seals Halichoerus grypus: assessing the effects of the 1988 and 2002 PDV epizootics

P. Pomeroy, C. Duck, A. Hall, 2005 .

A Customizable Suite of Methods to Sequence and Annotate Cattle Antibodies

J. Schwartz, B. Charleston, J. Hammond, 2023, Vaccines.

The unique evolution of the pig LRC, a single KIR but expansion of LILR and a novel Ig receptor family

J. Schwartz, J. Hammond, 2018, Immunogenetics.

A DEAD-Box Helicase Mediates an RNA Structural Transition in the HIV-1 Rev Response Element.

J. Williamson, D. Millar, J. Hammond, 2017, Journal of molecular biology.

Comparison and functional implications of the 3D architectures of viral tRNA-like structures.

J. Kieft, R. Rambo, J. Hammond, 2009, RNA.

ALS Variants of Annexin A11’s Proline-Rich Domain Impair Its S100A6-Mediated Fibril Dissolution

L. Deshmukh, R. Ghirlando, J. Hammond, 2023, ACS chemical neuroscience.

Subpopulations of swine γδ T cells defined by TCRγ and WC1 gene expression.

J. Schwartz, J. Hammond, S. Hammer, 2021, Developmental and comparative immunology.

Phocid Seal Leptin: Tertiary Structure and Hydrophobic Receptor Binding Site Preservation during Distinct Leptin Gene Evolution

A. Hall, C. Hauton, J. Hammond, 2012, PloS one.

Cattle MHC nomenclature: is it possible to assign sequences to discrete class I genes?

C. Davies, J. Hammond, S. Marsh, 2012, Immunogenetics.

The assembly and characterisation of two structurally distinct cattle MHC class I haplotypes point to the mechanisms driving diversity

J. Schwartz, J. Hammond, 2015, Immunogenetics.

Multi-domain packing in the aminoacylatable 3' end of a plant viral RNA.

J. Kieft, R. Rambo, J. Hammond, 2010, Journal of molecular biology.

The UK Veterinary Immunological Toolbox Website: promoting vaccine research by facilitating communication and removing reagent barriers

G. Maccari, J. Hammond, J. Hope, 2020, Immunology.

Induction of influenza-specific local CD8 T-cells in the respiratory tract after aerosol delivery of vaccine antigen or virus in the Babraham inbred pig

A. Sewell, John J Miles, G. Dolton, 2018, PLoS pathogens.

Cattle killer immunoglobulin-like receptor expression on leukocyte subsets suggests functional divergence compared to humans.

S. Khakoo, J. Birch, J. Hammond, 2023, Veterinary immunology and immunopathology.

NKp46+CD3+ Cells: A Novel Nonconventional T Cell Subset in Cattle Exhibiting Both NK Cell and T Cell Features

W. Morrison, J. Hammond, J. Hope, 2014, The Journal of Immunology.

Ca2+ Current-Deficient Pawn Mutants are Promoted to Queens During Chronic Depolarization of Paramecium tetraurelia

R. R. Preston, J. Hammond, 1999, Journal of Membrane Biology.

IgMAT: immunoglobulin sequence multi-species annotation tool for any species including those with incomplete antibody annotation or unusual characteristics

G. Maccari, J. Hammond, Daniel Dorey-Robinson, 2021, bioRxiv.

The B Cell Response to Foot-and-Mouth Disease Virus in Cattle following Sequential Vaccination with Multiple Serotypes

D. Stuart, B. Charleston, A. Kotecha, 2017, Journal of Virology.