H. Dekker

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Supramolecular organization and dual function of the IsiA chlorophyll-binding protein in cyanobacteria.

S. D’haene, E. Boekema, H. Matthijs, 2004, Biochemistry.

Separation, stability and kinetics of monomeric and dimeric bovine heart cytochrome c oxidase.

H. Dekker, T. Hakvoort, K. Moolenaar, 1987, Biochimica et biophysica acta.

Identification of Secreted Candida Proteins Using Mass Spectrometry.

A. D. de Boer, H. Dekker, Emilia Gómez-Molero, 2016, Methods in molecular biology.

The effects of fluconazole on the secretome, the wall proteome and wall integrity of the clinical fungus Candida albicans

C. D. de Koster, F. Klis, S. Brul, 2013 .

Identification and Quantitation of Newly Synthesized Proteins in Escherichia coli by Enrichment of Azidohomoalanine-labeled Peptides with Diagonal Chromatography

K. Hellingwerf, C. D. de Koster, L. de Jong, 2009, Molecular & Cellular Proteomics.

Disulfide Bond Structure and Domain Organization of Yeast β(1,3)-Glucanosyltransferases Involved in Cell Wall Biogenesis*

C. D. de Koster, L. de Jong, H. Dekker, 2008, Journal of Biological Chemistry.

Time-series analysis of the transcriptome and proteome of Escherichia coli upon glucose repression.

Chris G de Koster, Huub C J Hoefsloot, Klaas J Hellingwerf, 2015, Biochimica et biophysica acta.

Identification and Quantitation of Newly Synthesized Proteins in Escherichia coli by Enrichment of Azidohomoalanine-labeled Peptides with Diagonal Chromatography□S

K. Hellingwerf, C. G. Koster, L. Jong, 2009 .

The effect of detergents on bovine cytochrome c oxidase: a kinetic approach.

H. Dekker, N. Back, T. Hakvoort, 1987, Biochimica et biophysica acta.

Mass spectrometric quantification of the adaptations in the wall proteome of Candida albicans in response to ambient pH.

K. Hellingwerf, C. D. de Koster, E. Manders, 2011, Microbiology.

High Biofilm Formation of Non-Smooth Candida parapsilosis Correlates with Increased Incorporation of GPI-Modified Wall Adhesins

A. D. de Boer, H. Dekker, Emilia Gómez-Molero, 2021, Pathogens.

Colorectal Mucus Binds DC-SIGN and Inhibits HIV-1 Trans-Infection of CD4+ T-Lymphocytes

W. Paxton, C. Herrera, R. Sanders, 2015, PloS one.

Identification of the peroxidase-generated intermolecular dityrosine cross-link in bovine α-lactalbumin.

C. D. de Koster, H. Gruppen, A. Westphal, 2011, Journal of agricultural and food chemistry.

Hyphal induction in the human fungal pathogen Candida albicans reveals a characteristic wall protein profile.

C. D. de Koster, F. Klis, S. Brul, 2011, Microbiology.

The Sulfonium Ion Linkage in Myeloperoxidase

I. Kooter, H. Dekker, R. Wever, 1999, The Journal of Biological Chemistry.

Characterization of the Asp94 and Glu242 mutants in myeloperoxidase, the residues linking the heme group via ester bonds.

I. Kooter, N. Sijtsema, H. Dekker, 1999, European journal of biochemistry.

Expression of holo-proteorhodopsin in Synechocystis sp. PCC 6803.

K. Hellingwerf, H. Dekker, W. D. de Grip, 2016, Metabolic engineering.

Further Evidence for the Presence of Mitochondrially Encoded Subunits in Cytochrome c Oxidase of the Trypanosomatid Crithidia fasciculata

R. Benne, H. Dekker, D. Speijer, 1997, Biological chemistry.

Purification and characterization of cytochrome c oxidase from the insect trypanosomatid Crithidia fasciculata.

R. Benne, H. Dekker, D. Speijer, 1996, Molecular and biochemical parasitology.

LePLDbeta1 activation and relocalization in suspension-cultured tomato cells treated with xylanase.

C. D. de Koster, M. Haring, T. Munnik, 2006, The Plant journal : for cell and molecular biology.

The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants.

C. D. de Koster, M. Rep, P. Houterman, 2007, Molecular plant pathology.

Purification and properties of a (3Z):(2E)-enal isomerase from Manduca sexta’s oral secretion

M. Rep, I. Baldwin, M. Haring, 2011 .

The effects of pH and ionic strength on cytochrome c oxidase steady-state kinetics reveal a catalytic and a non-catalytic interaction domain for cytochrome c.

H. Dekker, K. Sinjorgo, A. Muijsers, 1986, Biochimica et biophysica acta.

Identification of novel candidate phosphatidic acid-binding proteins involved in the salt-stress response of Arabidopsis thaliana roots.

C. D. de Koster, M. Haring, T. Munnik, 2013, The Biochemical journal.

Flexibility of light-harvesting in iron-stressed cyanobacteria Flexibility of light-harvesting in iron-stressed cyanobacteria

Niels, S. D’haene, H. Matthijs, 2009 .

Relationship between culture conditions and the dependency on mitochondrial function of mammalian cell proliferation

J. N. Spelbrink, H. Dekker, C. Van den Bogert, 1992, Journal of cellular physiology.

Self-assembly of a confined rhodium catalyst for asymmetric hydroformylation of unfunctionalized internal alkenes.

J. Reek, H. Dekker, T. Gadzikwa, 2012, Journal of the American Chemical Society.

Mitochondria in cultured human muscle cells depleted of mitochondrial DNA.

H. Dekker, M. van den Berg, P. Bolhuis, 1993, European Journal of Cell Biology.

Mass Spectrometric Identification of Isoforms of PR Proteins in Xylem Sap of Fungus-Infected Tomato1

C. D. de Koster, M. Rep, J. Vossen, 2002, Plant Physiology.

Transglutaminase‐mediated modification of glutamine and lysine residues in native bovine β‐lactoglobulin

C. D. de Koster, H. Dekker, G. D. de Jong, 2004, Biotechnology and bioengineering.

Regulation of the expression of mitochondrial proteins: relationship between mtDNA copy number and cytochrome-c oxidase activity in human cells and tissues.

M. Holtrop, J. Taanman, H. Dekker, 1993, Biochimica et biophysica acta.

Inhibition of pig kidney diamine oxidase by nazlinin and nazlinin derivatives.

H. Dekker, B. V. van Gelder, E. Cheng, 1995, Biochimica et biophysica acta.

Of Novel Adhesin-like Wall Proteins : Differential Incorporation Candida Glabrata Supplemental Material

C. D. de Koster, W. Crielaard, F. Klis, 2008 .

Primary structure and characterization of the vanadium chloroperoxidase from the fungus Curvularia inaequalis.

A. Messerschmidt, H. Dekker, A. Muijsers, 1995, European journal of biochemistry.

Mitochondrial Function and Biogenesis in Cultured Mammalian Cells without Functional Respiratory Chains

J. N. Spelbrink, H. Dekker, P. Bolhuis, 1992 .

Characterization of Awp14, A Novel Cluster III Adhesin Identified in a High Biofilm-Forming Candida glabrata Isolate

H. Dekker, Emilia Gómez-Molero, P. D. de Groot, 2021, Frontiers in Cellular and Infection Microbiology.

Identification and Characterization of (3Z):(2E)-Hexenal Isomerases from Cucumber

Eleni A. Spyropoulou, C. D. de Koster, M. Haring, 2017, Front. Plant Sci..

UvA-DARE ( Digital Academic Repository ) Identification and Characterization of ( 3 Z ) : ( 2 E )-Hexenal Isomerases from Cucumber Spyropoulou

Eleni A. Spyropoulou, M. Haring, R. Schuurink, 2017 .

Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

K. Hellingwerf, H. Hoefsloot, C. D. de Koster, 2015, Biotechnology for Biofuels.

Isolation, Characterization, and Primary Structure of the Vanadium Chloroperoxidase from the Fungus Embellisia didymospora *

H. Dekker, A. Muijsers, R. Wever, 1998, The Journal of Biological Chemistry.

Changes in the Spore Proteome of Bacillus cereus in Response to Introduction of Plasmids

P. Setlow, S. Brul, G. Kramer, 2022, Microorganisms.

The sulphoxidation of thioanisole catalysed by lactoperoxidase and Coprinus cinereus peroxidase: evidence for an oxygen-rebound mechanism.

H. Schoemaker, H. Dekker, R. Wever, 1998, European journal of biochemistry.

Pre-steady-state kinetic study on the formation of compound I and II of ligninase.

H. Schoemaker, P. Harvey, J. Palmer, 1989, Biochimica et biophysica acta.

Control of the coordination geometry around platinum by a supramolecular capsule

J. Reek, H. Dekker, P. V. Leeuwen, 2011 .

Diphosphine capsules for transition-metal encapsulation.

C. D. de Koster, J. Reek, H. Dekker, 2011, Chemistry, an Asian journal.

Bisphosphine based hetero-capsules for the encapsulation of transition metals.

C. D. de Koster, J. Reek, H. Dekker, 2006, Chemical communications.

UvA-DARE Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803

K. Hellingwerf, H. Hoefsloot, O. Borirak, 2015 .

Effect of Psidium cattleianum Leaf Extract on Streptococcus mutans Viability, Protein Expression and Acid Production

W. Crielaard, D. Deng, M. Hoogenkamp, 2008, Caries Research.

Isolation and identification of phosphatidic acid targets from plants.

C. G. Koster, T. Munnik, N. Ktistakis, 2004, The Plant journal : for cell and molecular biology.

Processing, targeting, and antifungal activity of stinging nettle agglutinin in transgenic tobacco.

P. Houterman, B. Cornelissen, H. Dekker, 1999, Plant physiology.

clinical fungus Candida albicans 2

C. G. Koster, F. Klis, S. Brul, 2011 .

kinases and mRNA decapping machinery control root 9 development and response to salt

Eveline, M. Haring, R. Schuurink, 2019 .

Isoforms of human cytochrome-c oxidase. Subunit composition and steady-state kinetic properties.

A. V. van Kuilenburg, P. Nieboer, H. Dekker, 1991, European journal of biochemistry.

Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluids.

M. Rep, T. Munnik, L. de la Canal, 2011, Plant biology.

Isoforms of cytochrome c oxidase in tissues and cell lines of the mouse.

A. V. van Kuilenburg, H. Dekker, A. Muijsers, 1992, Biochimica et biophysica acta.

Quantification of mitochondrial proteins in cultured cells by immuno-flow cytometry.

H. Dekker, K. Sinjorgo, J. Boezeman, 1991, Biochimica et biophysica acta.

Vanadium chloroperoxidases occur widely in nature.

H. Dekker, R. Wever, M. Balzar, 1995, Biochemical Society transactions.

UvA-DARE ( Digital Academic Repository ) Molecular characterization of Candida in the oral cavity and factors involved in biofilm formation and virulence

W. Crielaard, F. Klis, D. Deng, 2014 .

Identification and Differential Gene Expression of Adhesin-Like Wall Proteins in Candida glabrata Biofilms

C. G. Koster, W. Crielaard, F. Klis, 2011, Mycopathologia.

Characterization of Urtica dioica agglutinin isolectins and the encoding gene family

P. Houterman, E. V. Van Damme, B. Cornelissen, 2004, Plant Molecular Biology.

Bovine cytochrome c oxidases, purified from heart, skeletal muscle, liver and kidney, differ in the small subunits but show the same reaction kinetics with cytochrome c.

H. Dekker, T. Hakvoort, K. Sinjorgo, 1987, Biochimica et biophysica acta.

The sequence of a small subunit of cytochrome c oxidase from Crithidia fasciculata which is homologous to mammalian subunit IV

R. Benne, H. Dekker, D. Speijer, 1996, FEBS letters.

Presteady-state and steady-state kinetic properties of human cytochrome c oxidase. Identification of rate-limiting steps in mammalian cytochrome c oxidase.

A. V. van Kuilenburg, P. Nieboer, H. Dekker, 1992, European journal of biochemistry.

Rate enhancement of the internal electron transfer in cytochrome c oxidase by the formation of a peroxide complex; its implication on the reaction mechanism of cytochrome c oxidase.

H. Dekker, A. Gorren, R. Wever, 1988, Biochimica et biophysica acta.

Ionic strength effects on cytochrome aa3 kinetics.

E. Veerman, H. Dekker, B. V. van Gelder, 1981, Biochimica et biophysica acta.

Mapping of the interaction domain for purified cytochrome c 1 on cytochrome c

E. Margoliash, N. Osheroff, H. Dekker, 1980, FEBS letters.

Detection of cross‐links between FtsH, YidC, HflK/C suggests a linked role for these proteins in quality control upon insertion of bacterial inner membrane proteins

C. D. de Koster, M. Urbanus, J. de Gier, 2008, FEBS letters.

Enantioselective Sulfoxidation Catalyzed by Vanadium Haloperoxidases.

H. Schoemaker, H. Dekker, R. Wever, 1998, Inorganic chemistry.

Kinetic investigations of the reactions of cytochrome c oxidase with hydrogen peroxide.

H. Dekker, A. Gorren, R. Wever, 1986, Biochimica et biophysica acta.

The oxidation of cytochrome c oxidase by hydrogen peroxide.

H. Dekker, A. Gorren, R. Wever, 1985, Biochimica et biophysica acta.

From phosphatases to vanadium peroxidases: a similar architecture of the active site.

H. Dekker, R. Wever, P. Barnett, 1997, Proceedings of the National Academy of Sciences of the United States of America.

Proteomic Analysis of Candida albicans Cell Walls Reveals Covalently Bound Carbohydrate-Active Enzymes and Adhesins

K. Hellingwerf, C. D. de Koster, F. Klis, 2004, Eukaryotic Cell.

Bis(metallo) capsules based on two ionic diphosphines.

C. D. de Koster, J. Reek, H. Dekker, 2011, Chemistry, an Asian journal.

Diphosphine Based Capsules for the Encapsulation of Transition Metals

J. Reek, H. Dekker, P. V. Leeuwen, 2010 .

Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry.

C. D. de Koster, X. Yang, H. Buncherd, 2012, Journal of proteomics.

A small, cysteine‐rich protein secreted by Fusarium oxysporum during colonization of xylem vessels is required for I‐3‐mediated resistance in tomato

C. D. de Koster, M. Rep, P. Houterman, 2004, Molecular microbiology.

The novel Cladosporium fulvum lysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species

C. D. de Koster, B. Thomma, J. Vossen, 2008, Molecular microbiology.

Comprehensive Two-Dimensional Liquid Chromatography with Stationary-Phase-Assisted Modulation Coupled to High-Resolution Mass Spectrometry Applied to Proteome Analysis of Saccharomyces cerevisiae.

P. Schoenmakers, S. Eeltink, H. Dekker, 2015, Analytical chemistry.

Bacillus subtilis Spore Inner Membrane Proteome.

C. D. de Koster, S. Brul, Linli Zheng, 2016, Journal of proteome research.

Oxidation reactions catalyzed by vanadium chloroperoxidase from Curvularia inaequalis.

H. Schoemaker, H. Dekker, R. Wever, 2000, Journal of inorganic biochemistry.

A steady-state study on the formation of Compounds II and III of myeloperoxidase.

A. V. van Kuilenburg, H. Dekker, A. Muijsers, 1988, Biochimica et biophysica acta.

Mass spectrometric analysis of the secretome of Candida albicans

C. D. de Koster, F. Klis, S. Brul, 2010, Yeast.

Hypoxic conditions and iron restriction affect the cell-wall proteome of Candida albicans grown under vagina-simulative conditions.

K. Hellingwerf, C. D. de Koster, M. J. Teixeira de Mattos, 2008, Microbiology.

Adhesins Carbohydrate-Active Enzymes and Cell Walls Reveals Covalently Bound Candida albicans Proteomic Analysis of

K. Hellingwerf, C. D. de Koster, F. Klis, 2004 .

Heat shock protein 90 and its co-chaperone protein phosphatase 5 interact with distinct regions of the tomato I-2 disease resistance protein.

C. D. de Koster, S. V. Van Wees, M. Haring, 2005, The Plant journal : for cell and molecular biology.

Proteomic analysis of hyperadhesive Candida glabrata clinical isolates reveals a core wall proteome and differential incorporation of adhesins.

C. D. de Koster, N. Chauhan, J. D. de Soet, 2015, FEMS yeast research.

The effect of pH and ionic strength on the pre-steady-state reaction of cytochrome c and cytochrome aa3.

R. Boelens, H. Dekker, B. V. van Gelder, 1981, Biochimica et biophysica acta.

In pursuit of protein targets: proteomic characterization of bacterial spore outer layers.

C. D. de Koster, S. Brul, H. Dekker, 2013, Journal of proteome research.

Gel‐free proteomic identification of the Bacillus subtilis insoluble spore coat protein fraction

C. D. de Koster, R. Kort, A. T. Beek, 2011, Proteomics.

H2O2 Production in Species of the Lactobacillus acidophilus Group: a Central Role for a Novel NADH-Dependent Flavin Reductase

M. Kleerebezem, M. D. de Mattos, J. Arents, 2014, Applied and Environmental Microbiology.

Non-SMC Element 2 (NSMCE2) of the SMC5/6 Complex Helps to Resolve Topological Stress

R. Hoebe, J. Stap, S. Repping, 2016, International journal of molecular sciences.

Comprehensive Proteomic Analysis of Saccharomyces cerevisiae Cell Walls

C. D. de Koster, F. Klis, L. de Jong, 2005, Journal of Biological Chemistry.

CHAPTER 5 R proteins : molecular switches controlled by their nucleotide binding status

F. Takken, H. Dekker, E. Lukasik-Shreepaathy, 2011 .

UvA-DARE ( Digital Academic Repository ) Non-SMC Element 2 ( NSMCE 2 ) of the SMC 5 / 6 Complex Helps to Resolve Topological Stress

R. Hoebe, J. Stap, S. Repping, 2016 .

The tomato xylem sap protein XSP10 is required for full susceptibility to Fusarium wilt disease

M. Rep, F. Takken, H. Dekker, 2010, Journal of experimental botany.

The presteady state reaction of chemically modified cytochromes c with cytochrome oxidase.

E. Margoliash, N. Osheroff, E. Veerman, 1983, The Journal of biological chemistry.

SnRK2 Protein Kinases and mRNA Decapping Machinery Control Root Development and Response to Salt1[OPEN]

Eveline Van De Slijke, G. De Jaeger, K. Gevaert, 2019, Plant Physiology.

Native Thrombocidin-1 and Unfolded Thrombocidin-1 Exert Antimicrobial Activity via Distinct Structural Elements

H. Vogel, J. Krijgsveld, J. Drijfhout, 2011, The Journal of Biological Chemistry.

A new crosslinker for mass spectrometric analysis of the quaternary structure of protein complexes

L. Jong, H. Dekker, A. Muijsers, 2001, Journal of the American Society for Mass Spectrometry.

The regulation of the vanadium chloroperoxidase from Curvularia inaequalis.

H. Dekker, R. Wever, P. Barnett, 1997, Biochimica et biophysica acta.

Modification of glutamine and lysine residues in holo and apo alpha-lactalbumin with microbial transglutaminase.

C. D. de Koster, H. Dekker, L. D. de Koning, 2003, Journal of agricultural and food chemistry.

Time-series resolution of gradual nitrogen starvation and its impact on photosynthesis in the cyanobacterium Synechocystis PCC 6803.

Jef Huisman, J. Huisman, H. Matthijs, 2012, Physiologia plantarum.

Human heart cytochrome c oxidase subunit VIII Purification and determination of the complete amino acid sequence

A. V. van Kuilenburg, J. V. Van Beeumen, H. Dekker, 1988, FEBS letters.

Phosphorylation of androgen receptor isoforms.

J. Trapman, L. de Jong, J. Grootegoed, 2004, The Biochemical journal.

The Membrane Proteome of Spores and Vegetative Cells of the Food-Borne Pathogen Bacillus cereus

S. Brul, G. Kramer, H. Dekker, 2021, International journal of molecular sciences.

High Resolution Analysis of Proteome Dynamics during Bacillus subtilis Sporulation

P. Setlow, S. Brul, G. Kramer, 2021, bioRxiv.

A tomato xylem sap protein represents a new family of small cysteine‐rich proteins with structural similarity to lipid transfer proteins

C. D. de Koster, M. Rep, J. Vossen, 2003, FEBS letters.

The Candida albicans cell wall protein Rhd3/Pga29 is abundant in the yeast form and contributes to virulence

C. D. de Koster, F. Klis, M. Schaller, 2010, Yeast.

Shape up your root Novel cellular pathways mediating root responses to salt stress and phosphate starvation

Eveline, M. Haring, R. Schuurink, 2017 .

A salivary GMC oxidoreductase of Manduca sexta re-arranges the green leaf volatile profile of its host plant

C. D. de Koster, E. Grosse-Wilde, H. Vogel, 2023, Nature communications.

UvA-DARE (Digital Academic Repository) Bacillus subtilis Spore Inner Membrane Proteome

S. Brul, H. Dekker, W. Abhyankar, 2016 .

UvA-DARE ( Digital Academic Repository ) Quantitative proteomics analysis of an ethanol-and a lactate-producing mutant strain of Synechocystis sp . PCC 6803

K. Hellingwerf, H. Hoefsloot, C. G. Koster, 2015 .

Time-series analysis of the transcriptome and proteome of E . coli upon glucose repression

H. Hoefsloot, O. Borirak, Jeffrey Green, 2015 .

Encounters with oxygen : Aerobic physiology and HO production of Lactobacillus johnsonii

Christof, M. Kleerebezem, J. Arents, 2014 .

Non-SMC Element 2 (NSMCE2) of the SMC5/6 Complex Helps to Resolve Topological Stress

R. Hoebe, J. Stap, S. Repping, 2016, International journal of molecular sciences.

Chimeric proteins of stinging nettle lectin, chitinase and beta-1,3-glucanase

P. Houterman, E. Damme, H. Dekker, 2000 .

Identification and Quantitation of Newly Synthesized Proteins in Escherichia coli by Enrichment of Azidohomoalanine-labeled Peptides with Diagonal Chromatography

K. Hellingwerf, C. D. de Koster, L. de Jong, 2009, Molecular & Cellular Proteomics.

The Cell Wall of the Human Pathogen Candida glabrata: Differential Incorporation of Novel Adhesin-Like Wall Proteins

C. D. de Koster, W. Crielaard, F. Klis, 2008, Eukaryotic Cell.