A. Gruber

发表

Structured Rnas in the Encode Selected Regions of the Human Genome

M. Gerstein, Andrea Tanzer, A. Reymond, 2022 .

P. Stadler, I. Hofacker, A. Mosig, 2008, Molecular biology and evolution.

P. Stadler, Jana Hertel, M. Zavolan, 2016, Nucleic acids research.

A comprehensive analysis of 3′ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation

Ralf Schmidt, Mihaela Zavolan, Manuel Belmadani, 2015, bioRxiv.

AREsite: a database for the comprehensive investigation of AU-rich elements

Ivo L. Hofacker, Jörg Fallmann, Andreas R. Gruber, 2010, Nucleic Acids Res..

Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation

I. Hofacker, T. Rülicke, Mathias Müller, 2011, Molecular systems biology.

Arthropod 7 SK RNA

P. Stadler, I. Hofacker, A. Mosig, 2008 .

Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors

M. Zavolan, W. Keller, A. Gruber, 2013, Wiley interdisciplinary reviews. RNA.

Characterization of Chelonus inanitus polydnavirus segments: sequences and analysis, excision site and demonstration of clustering.

A. Gruber, B. Lanzrein, S. Wyder, 2002, The Journal of general virology.

Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC

E. van Nimwegen, M. Zavolan, Andreas J. Gruber, 2018, Genome Biology.

Discovery of physiological and cancer-related regulators of 3’ UTR processing with KAPAC

E. van Nimwegen, M. Zavolan, Andreas J. Gruber, 2017, bioRxiv.

Nematode sbRNAs: Homologs of Vertebrate Y RNAs

Andrea Tanzer, P. Stadler, I. Hofacker, 2010, Journal of Molecular Evolution.

A comprehensive analysis of 3’ end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogenous ribonucleoprotein C on cleavage and polyadenylation

M. Zavolan, W. Keller, Andreas J. Gruber, 2015, bioRxiv.

Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells

E. van Nimwegen, M. Zavolan, W. Keller, 2014, Nature Communications.

U7 snRNP-specific Lsm11 protein: dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3′ end processing

D. Schümperli, A. Gruber, Teldja N. Azzouz, 2005, Nucleic acids research.

U 7 snRNP-specific Lsm 11 protein : dual binding contacts with the 100 kDa zinc finger processing factor ( ZFP 100 ) and a ZFP 100-independent function in histone RNA 3 0 end processing

D. Schümperli, A. Gruber, Teldja N. Azzouz, 2005 .

Animal snoRNAs and scaRNAs with exceptional structures

Andrea Tanzer, P. Stadler, I. Hofacker, 2011, RNA biology.

Presence of polydnavirus transcripts in an egg-larval parasitoid and its lepidopterous host.

A. Gruber, B. Lanzrein, A. Johner, 1999, The Journal of general virology.

Polydnavirus DNA of the braconid wasp Chelonus inanitus is integrated in the wasp's genome and excised only in later pupal and adult stages of the female.

D. Schümperli, A. Gruber, B. Lanzrein, 1996, The Journal of general virology.

The Vienna RNA Websuite

Ronny Lorenz, Stephan H. Bernhart, Ivo L. Hofacker, 2008, Nucleic Acids Res..

The ViennaRNA web services.

Ronny Lorenz, Andreas R Gruber, Stephan H Bernhart, 2015, Methods in molecular biology.

Strategies for measuring evolutionary conservation of RNA secondary structures

Stephan H. Bernhart, Ivo L. Hofacker, Andreas R. Gruber, 2008, BMC Bioinformatics.

The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures

Ivo L. Hofacker, Andreas R. Gruber, Stefan Washietl, 2007, Nucleic Acids Res..

genome Structured RNAs in the ENCODE selected regions of the human Related Content

M. Gerstein, Andrea Tanzer, A. Reymond, 2007 .

Structure of a mouse histone-encoding gene cluster.

D. Schümperli, A. Streit, A. Gruber, 1990, Gene.

RNAalifold: improved consensus structure prediction for RNA alignments

Sebastian Will, Peter F. Stadler, Stephan H. Bernhart, 2008, BMC Bioinformatics.

Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC

E. van Nimwegen, M. Zavolan, Andreas J. Gruber, 2018, Genome Biology.

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

Mihaela Zavolan, Alexander Kanitz, Andreas R. Gruber, 2015, Genome Biology.

Strategies for computational noncoding RNA detection

A. Gruber, 2010 .

Invertebrate 7SK snRNAs

P. Stadler, I. Hofacker, G. Obernosterer, 2008, Journal of Molecular Evolution.

Cleavage factor Im is a key regulator of 3′ UTR length

Andreas R. Gruber, Georges Martin, W. Keller, 2012, RNA biology.

Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.

Mihaela Zavolan, Andreas R Gruber, Georges Martin, 2012, Cell reports.

Genome-wide Analysis of Pre-mRNA 3 0 End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3 0 UTR Length

Mihaela Zavolan, Andreas R. Gruber, Georges Martin, 2012 .

RNAz 2.0: Improved Noncoding RNA Detection

Peter F. Stadler, Ivo L. Hofacker, Sven Findeiß, 2010, Pacific Symposium on Biocomputing.

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs

M. Zavolan, O. Mühlemann, A. Gruber, 2013, Nature Structural &Molecular Biology.

Polydnavirus of the parasitic wasp Chelonus inanitus (Braconidae): characterization, genome organization and time point of replication.

D. Schümperli, A. Gruber, B. Lanzrein, 1994, The Journal of general virology.

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

Mihaela Zavolan, Andreas R Gruber, Hadi Jorjani, 2013, Genome Biology.

RNA Polymerase III promoter screen uncovers a novel noncoding RNA family conserved in Caenorhabditis and other clade V nematodes.

A. Gruber, 2014, Gene.

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33

M. Zavolan, E. Wahle, W. Keller, 2014, Genes & development.

Conserved sequences and cell-specific DNase I hypersensitive sites upstream from the co-ordinately expressed αI- and αII-globin genes of Xenopus laevis☆

W. Knöchel, W. Meyerhof, A. Gruber, 1986 .

Primary structure and evolutionary relationship between the adult α-globin genes and their 5′-flanking regions ofXenopus laevis andXenopus tropicalis

W. Knöchel, W. Meyerhof, A. Gruber, 2005, Journal of Molecular Evolution.

Isolation of an active gene and of two pseudogenes for mouse U7 small nuclear RNA.

D. Soldati, D. Schümperli, A. Gruber, 1991, Biochimica et biophysica acta.

Roquin recognizes a non-canonical hexaloop structure in the 3′-UTR of Ox40

M. Zavolan, R. Buhmann, R. Janowski, 2016, Nature Communications.

Discovery of physiological and cancer-related regulators of 3′ UTR processing with KAPAC

E. van Nimwegen, M. Zavolan, Andreas J. Gruber, 2017, Genome Biology.

Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data

M. Zavolan, Andreas J. Gruber, A. Gruber, 2015, Genome Biology.

Structured RNAs in the ENCODE selected regions of the human genome.

M. Gerstein, Andrea Tanzer, A. Reymond, 2007, Genome research.

Invertebrate 7SK snRNAs

P. Stadler, I. Hofacker, G. Obernosterer, 2008, Journal of Molecular Evolution.