David J. States

发表

SAGA: a subgraph matching tool for biological graphs

Jignesh M. Patel, Yuanyuan Tian, Richard C. McEachin, 2007, Bioinform..

Inferring Time-Varying Network Topologies from Gene Expression Data

Alfred O. Hero, David J. States, Arvind Rao, 2007, EURASIP J. Bioinform. Syst. Biol..

Probabilistic approaches to the use of higher order clone relationships in physical map assembly

David J. States, Volker Nowotny, Thomas W. Blackwell, 2001, ISMB.

Estimation of allele frequencies from color-multiplexed electropherograms

David J. States, David G. Politte, David R. Maffitt, 1998, RECOMB '98.

MiSearch adaptive pubMed search tool

David J. States, Alexander S. Ade, Zachary C. Wright, 2009, Bioinform..

A bioinformatics analysis of the cell line nomenclature

David J. States, Sirarat Sarntivijai, Alexander S. Ade, 2008, Bioinform..

Comparative accuracy of methods for protein sequence similarity search

Pankaj Agarwal, David J. States, D. States, 1998, Bioinform..

Machine Learning Techniques for Establishing the Provenance of Biological Interactions

Dragomir R. Radev, David J. States, Siwei Shen, 2005 .

Bioinformatics code must enforce citation

David J. States, D. States, 2002, Nature.

Probabilistic data integration and visualization for understanding transcriptional regulation

Alfred O. Hero, David J. States, Arvind Rao, 2006, 2006 14th European Signal Processing Conference.

UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences

Eric C. Rouchka, David J. States, Warren Gish, 2000, ISMB.

Identification of protein coding regions by database similarity search

David J. States, Warren Gish, W. Gish, 1993, Nature Genetics.

Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions

Eric C. Rouchka, David J. States, Thomas W. Blackwell, 1999, ISMB.

Using Directed Information to Build Biologically Relevant Influence Networks

Alfred O. Hero, David J. States, Arvind Rao, 2007, J. Bioinform. Comput. Biol..

Integrating and annotating the interactome using the MiMI plugin for cytoscape

Jing Gao, David J. States, H. V. Jagadish, 2009, Bioinform..

Compact Encoding Strategies for DNA Sequence Similarity Search

Pankaj Agarwal, David J. States, D. States, 1996, ISMB.

Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function

Jing Gao, Yili Chen, David J. States, 2007, PLoS Comput. Biol..

Cytoscape ESP: simple search of complex biological networks

Allan Kuchinsky, Gary D. Bader, Gary D Bader, 2008, Bioinform..

Information Enhancement Methods for Large Scale Sequence Analysis

Jean-Michel Claverie, David J. States, D. States, 1993, Comput. Chem..

Michigan molecular interactions r2: from interacting proteins to pathways

Jignesh M. Patel, Yuanyuan Tian, Jing Gao, 2008, Nucleic Acids Res..

Bayesian classification of protein structure

Lawrence Hunter, David J. States, 1992, IEEE Expert.

Applying Bayesian classification to protein structure

Lawrence Hunter, David J. States, 1991, [1991] Proceedings. The Seventh IEEE Conference on Artificial Intelligence Application.

The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome

Pankaj Agarwal, David J. States, D. States, 1994, ISMB.

Blind men and elephants: What do citation summaries tell us about a research article?

Dragomir R. Radev, David J. States, Aaron Elkiss, 2008, J. Assoc. Inf. Sci. Technol..

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis

Adam D. Schuyler, David J. States, Junguk Hur, 2009, Bioinform..

Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion

Alfred O. Hero, David J. States, Arvind Rao, 2006, 2006 IEEE International Conference on Acoustics Speech and Signal Processing Proceedings.

CLO: The cell line ontology

Yue Liu, David J. States, Yu Lin, 2014, J. Biomed. Semant..

A structure based similarity measure for nucleic acid sequence comparison

David J. States, Thomas W. Blackwell, Rongxiang Liu, 1998, RECOMB '98.

Motifs in Biology: Analysis of Ambiguous Data: Introduction

Lloyd Allison, David J. States, Toni Kazic, 1994, HICSS.

Chapter 6 - Classification-based molecular sequence analysis

David J. States, William C. Reisdorf, D. States, 1998 .

Data and text mining Wnt pathway curation using automated natural language processing : combining statistical methods with partial and full parse for knowledge extraction

Carlos Santos, David J. States, Daniela Eggle, 2005 .

Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification

Lawrence Hunter, David J. States, Nomi L. Harris, 1993, ISMB.

Conformational model for binding site recognition by the E.coli MetJ transcription factor

David J. States, Thomas W. Blackwell, Rongxiang Liu, 2001, Bioinform..

ISMB 2005 Organization

Burkhard Rost, David J. States, H. V. Jagadish, 2005, ISMB.

Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together

Bin Liu, Carlos Santos, David J. States, 2006, Nucleic Acids Res..

Time to defend what we have won

David J. States, 2001, Bioinform..

Mega-Classification: Discovering Motifs in Massive Datastreams

Lawrence Hunter, David J. States, Nomi L. Harris, 1992, AAAI.

Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information

Alfred O. Hero, David J. States, Arvind Rao, 2007, EURASIP J. Bioinform. Syst. Biol..

Ismb 2005

Burkhard Rost, David J. States, H. V. Jagadish, 2005, ISMB.

Blind men and elephants: What do citation summaries tell us about a research article?

Dragomir R. Radev, David J. States, Aaron Elkiss, 2008 .

Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives

Alfred O. Hero, David J. States, Arvind Rao, 2010, J. Bioinform. Comput. Biol..

Using directed information for influence discovery in interconnected dynamical systems

Alfred O. Hero, David J. States, Arvind Rao, 2008, Optical Engineering + Applications.

Efficient Classification of Massive, Unsegmented Datastreams

Lawrence Hunter, David J. States, Nomi L. Harris, 1992, ML.

Data Standardization and Integration in Collaborative Proteomics Studies

David J. States, Gilbert S. Omenn, Marcin Adamski, 2005 .

A Bayesian Evolutionary Distance for Parametrically Aligned Sequences

Pankaj Agarwal, David J. States, 1996, J. Comput. Biol..

Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis

Eric C. Rouchka, David J. States, D. States, 1998, ISMB.

Bioinformatics Applications Note Databases and Ontologies Metab2mesh: Annotating Compounds with Medical Subject Headings

David J. States, Maureen A. Sartor, Alexander S. Ade, 2022 .

Erratum: Computational Proteomics Analysis System (CPAS): An extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments (Journal of Proteome Research (2006) 5 (112-121))

David J. States, Brendan MacLean, Adam Rauch, 2006 .

QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification

David J. States, Warren Gish, W. Gish, 1994, J. Comput. Biol..

GLay: community structure analysis of biological networks

Allan Kuchinsky, Gang Su, Fan Meng, 2010, Bioinform..

ClassX: a browsing tool for protein sequence megaclassifications

Lawrence Hunter, David J. States, Nomi L. Harris, 1993, [1993] Proceedings of the Twenty-sixth Hawaii International Conference on System Sciences.

The pathology and pathogenesis of injuries caused by lateral impact accidents

David J. States, John D. States, D. States, 1968 .

Computationally Identifying Novel NF-κB-Regulated Immune Genes in the Human Genome

Richard C. McEachin, David J. States, Rongxiang Liu, 2003 .

Sensitive Detection of Distant Protein Relationships Using Hidden Markov Model Alignment

David J. States, D. States, Xiaobing Shi, 2007 .

Profiles of Growth Hormone (GH)-regulated Genes Reveal Time-dependent Responses and Identify a Mechanism for Regulation of Activating Transcription Factor 3 By GH*

Richard C. McEachin, David J. States, Jeffrey S. Huo, 2006, Journal of Biological Chemistry.

A model for electrostatic effects in proteins

David J. States, Martin Karplus, M. Karplus, 1987 .