M. Kireeva

发表

Circularly permuted dihydrofolate reductase of E. coli has functional activity and a destabilized tertiary structure.

A. Murzin, V. Uversky, A. Gudkov, 1994, Protein engineering.

Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs.

Wade W Grabow, Wade W. Grabow, L. Jaeger, 2012, Nano letters.

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

B. Shapiro, E. Bindewald, M. Kashlev, 2014, Accounts of chemical research.

Computational and experimental studies of reassociating RNA/DNA hybrids containing split functionalities.

B. Shapiro, E. Bindewald, K. Afonin, 2015, Methods in enzymology.

Triggering of RNA Interference with RNA–RNA, RNA–DNA, and DNA–RNA Nanoparticles

B. Shapiro, M. Dobrovolskaia, K. Afonin, 2014, ACS nano.

Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage.

D. Gotte, J. Strathern, P. Cramer, 2012, Molecules and Cells.

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

C. Bustamante, Toyotaka Ishibashi, M. Kashlev, 2013, eLife.

Cyr61, a product of a growth factor-inducible immediate-early gene, promotes cell proliferation, migration, and adhesion

L. Lau, M. Kireeva, George P. Yang, 1996, Molecular and cellular biology.

Adhesion of Human Umbilical Vein Endothelial Cells to the Immediate-Early Gene Product Cyr61 Is Mediated through Integrin αvβ3 *

L. Lau, S. Lam, M. Kireeva, 1998, The Journal of Biological Chemistry.

Co-transcriptional production of RNA–DNA hybrids for simultaneous release of multiple split functionalities

B. Shapiro, E. Bindewald, M. Kashlev, 2013, Nucleic acids research.

Sensitivity of Mitochondrial Transcription and Resistance of RNA Polymerase II Dependent Nuclear Transcription to Antiviral Ribonucleosides

J. Arnold, C. Cameron, A. Gnatt, 2012, PLoS pathogens.

Cyr61, product of a growth factor-inducible immediate-early gene, regulates chondrogenesis in mouse limb bud mesenchymal cells.

T. V. Kolesnikova, M. Wong, L. Lau, 1997, Developmental biology.

Activation-dependent Adhesion of Human Platelets to Cyr61 and Fisp12/Mouse Connective Tissue Growth Factor Is Mediated through Integrin αIIbβ3 *

L. Lau, S. Lam, M. Kireeva, 1999, The Journal of Biological Chemistry.

Activation-dependent adhesion of human platelets to Cyr61 and Fisp12/mouse connective tissue growth factor is mediated through integrin alpha(IIb)beta(3).

L. Lau, S. Lam, M. Kireeva, 1999, The Journal of biological chemistry.

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli

D. Court, D. Gotte, J. Strathern, 2017, Genetics.

A Genetic Assay for Transcription Errors Reveals Multilayer Control of RNA Polymerase II Fidelity

D. Gotte, B. Shafer, J. Strathern, 2014, PLoS genetics.

Expression of SARS-CoV-2 surface glycoprotein fragment 319–640 in E. coli, and its refolding and purification

I. Mazo, M. Kireeva, Gabriel A. Fitzgerald, 2021, Protein Expression and Purification.

CYR 61 , a product of a growth factor-inducible immediate early gene , promotes angiogenesis and tumor growth

T. V. Kolesnikova, L. Lau, M. Kireeva, 1998 .

RNA Polymerases and Transcription

M. Kashlev, M. Kireeva, Z. Burton, 2018 .

Production and characterization of a highly pure RNA polymerase holoenzyme from Mycobacterium tuberculosis.

C. Bustamante, M. Kashlev, M. Kireeva, 2017, Protein expression and purification.

Cotranscriptional Production of Chemically Modified RNA Nanoparticles.

B. Shapiro, M. Kashlev, K. Afonin, 2017, Methods in molecular biology.

RNA–DNA and DNA–DNA base-pairing at the upstream edge of the transcription bubble regulate translocation of RNA polymerase and transcription rate

M. Kashlev, M. Kireeva, L. Lubkowska, 2018, Nucleic acids research.

Novel data on interactions of elongation factor Ts.

A. Gudkov, M. Bubunenko, M. Kireeva, 1992, Biochimie.

Cyr61 and Fisp12 are both ECM-associated signaling molecules: activities, metabolism, and localization during development.

T. V. Kolesnikova, L. Lau, M. Kireeva, 1997, Experimental cell research.

RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression.

M. Kashlev, M. Kireeva, Z. Burton, 2013, Chemical reviews.

Nature of the nucleosomal barrier to RNA polymerase II.

Vasily M Studitsky, M. Kashlev, V. Studitsky, 2005, Molecular cell.

The 8-Nucleotide-long RNA:DNA Hybrid Is a Primary Stability Determinant of the RNA Polymerase II Elongation Complex*

M. Kashlev, D. Waugh, M. Kireeva, 2000, The Journal of Biological Chemistry.

The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation.

R. Cukier, E. Nudler, M. Kashlev, 2013, Biochimica et biophysica acta.

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

Benoit Coulombe, Robert I Cukier, Zachary F Burton, 2012, BMC biophysics.

Conformational coupling, bridge helix dynamics and active site dehydration in catalysis by RNA polymerase.

Michael Feig, Michael Hampsey, Benoit Coulombe, 2010, Biochimica et biophysica acta.

Translocation by multi-subunit RNA polymerases.

Zachary F Burton, M. Kashlev, M. Kireeva, 2010, Biochimica et biophysica acta.

Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II.

B. Coulombe, M. Kashlev, J. Archambault, 2010, Protein expression and purification.

Millisecond phase kinetic analysis of elongation catalyzed by human, yeast, and Escherichia coli RNA polymerase.

M. Kashlev, Y. Nedialkov, Chunfen Zhang, 2009, Methods.

Mechanism of sequence-specific pausing of bacterial RNA polymerase

M. Kashlev, M. Kireeva, 2009, Proceedings of the National Academy of Sciences.

Rpb9 Subunit Controls Transcription Fidelity by Delaying NTP Sequestration in RNA Polymerase II*♦

J. Strathern, M. Kashlev, Y. Nedialkov, 2009, The Journal of Biological Chemistry.

Mutations in the Saccharomyces cerevisiae RPB1 Gene Conferring Hypersensitivity to 6-Azauracil

B. Shafer, J. Strathern, M. Kashlev, 2006, Genetics.

Mutations in the Saccharomyces cerevisiae RPB 1 Gene Conferring Hypersensitivity to 6 -

B. Shafer, M. Kashlev, M. Kireeva, 2006 .

Chromatin remodeling by RNA polymerases.

G. Felsenfeld, M. Kashlev, V. Studitsky, 2004, Trends in biochemical sciences.

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation.

J. Strathern, M. Kashlev, Y. Nedialkov, 2008, Molecular cell.

Overextended RNA:DNA hybrid as a negative regulator of RNA polymerase II processivity.

M. Kashlev, M. Kireeva, N. Komissarova, 2000, Journal of molecular biology.

Bacterial Polymerase and Yeast Polymerase II Use Similar Mechanisms for Transcription through Nucleosomes*

M. Kashlev, V. Studitsky, M. Kireeva, 2003, Journal of Biological Chemistry.

Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae.

M. Kashlev, M. Kireeva, L. Lubkowska, 2003, Methods in enzymology.

Interaction of RNA Polymerase II Fork Loop 2 with Downstream Non-template DNA Regulates Transcription Elongation*

B. Coulombe, M. Kashlev, M. Kireeva, 2011, The Journal of Biological Chemistry.

Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II.

D. Gotte, J. Strathern, M. Imashimizu, 2013, Journal of molecular biology.

Direct competition assay for transcription fidelity.

M. Kireeva, L. Lubkowska, 2015, Methods in molecular biology.

The Fidelity of Transcription

D. Gotte, B. Shafer, J. Strathern, 2012, The Journal of Biological Chemistry.

Productive mRNA stem loop-mediated transcriptional slippage: Crucial features in common with intrinsic terminators

J. F. Atkins, P. Baranov, Virag Sharma, 2015, Proceedings of the National Academy of Sciences.

Coliphage HK022 Nun protein inhibits RNA polymerase translocation

M. Kashlev, M. Gottesman, M. Kireeva, 2014, Proceedings of the National Academy of Sciences.

The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase.

M. Imashimizu, M. Kashlev, N. Shimamoto, 2019, Journal of molecular biology.

Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination.

M. Kashlev, M. Kireeva, J. Becker, 2002, Molecular cell.

Engineering of elongation complexes of bacterial and yeast RNA polymerases.

M. Kashlev, M. Kireeva, J. Becker, 2003, Methods in enzymology.

Single-molecule experiments have shed new light on the mechanisms responsible for the movement of RNA polymerase along DNA during transcription.

Robert A. Forties, Michelle D. Wang, Toyotaka Ishibashi, 2013 .

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier

Michelle D. Wang, Lu Bai, R. M. Fulbright, 2010, Nature Structural &Molecular Biology.

NusG controls transcription pausing and RNA polymerase translocation throughout the Bacillus subtilis genome

M. Kashlev, C. Mcintosh, P. FitzGerald, 2020, Proceedings of the National Academy of Sciences.

CYR61, a product of a growth factor-inducible immediate early gene, promotes angiogenesis and tumor growth.

T. V. Kolesnikova, L. Lau, M. Kireeva, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Assay of the fate of the nucleosome during transcription by RNA polymerase II.

M. Kashlev, V. Studitsky, M. Kireeva, 2003, Methods in enzymology.

Effects of Friedreich's ataxia (GAA)n·(TTC)n repeats on RNA synthesis and stability.

S. Mirkin, M. Kashlev, V. Petrovic, 2007, Nucleic acids research.

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

M. Kashlev, V. Studitsky, M. Kireeva, 2002, Molecular cell.

Nucleosome Remodeling Induced by RNA Polymerase II : Loss of the H 2 A / H 2 B Dimer during Transcription date passage of RNAP ?

M. Kashlev, V. Studitsky, M. Kireeva, 2002 .

IgG Antibodies Develop to Spike but Not to the Nucleocapsid Viral Protein in Many Asymptomatic and Light COVID-19 Cases

I. Mazo, M. Kireeva, M. Tutukina, 2021, Viruses.

BNT162b2, mRNA-1273, and Sputnik V Vaccines Induce Comparable Immune Responses on a Par With Severe Course of COVID-19

I. Mazo, M. Kireeva, M. Tutukina, 2022, Frontiers in Immunology.

Dual-Antigen System Allows Elimination of False Positive Results in COVID-19 Serological Testing

I. Mazo, M. Kireeva, A. Komarov, 2021, Diagnostics.

Translocation by multi-subunit RNA polymerases.

M. Kashlev, M. Kireeva, Z. Burton, 2010, Biochimica et biophysica acta.

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism

C. Bustamante, Toyotaka Ishibashi, M. Kashlev, 2013, eLife.